Speculations on the origin and evolution of the genus Leishmania

Recently two hypotheses have been proposed for the evolution of Leishmania involving respectively a Neotropical or Paleartic origin for the species. Here an alternative proposal on the phylogeny of Leishmania based on the major divisions within the genus is presented. In this hypothesis a Neotropic origin is retained for L. (Viannia) and Paraleishmania, a recently described section within the genus Leishmania, while an African origin is proposed for L. (Leishmania) and possibly Sauroleishmania. The current distribution of Leishmania in the Neotropics is explained as the product of multiple introductions of Leishmania parasites into the New World. Problems with organismal identity in Sauroleishmania and the use of molecular sequence data in inferring phylogenies are also discussed.     

Functional evolution: origin and problems

In the article the history of comparative and evolutionary physiology since the early XIX is given. The most substantial methods of evolutionary physiology are described. In the mid-50ies Orbely put forward the suggestion concerning two tasks facing evolutionary physiology, namely the study of evolution of functions and functional evolution. In the present work attention is given to the principles underlying evolution of functions on different levels of physiological systems. The main aspects of functional evolution are discussed.     

Mutation, selection and the future of human evolution

Several recent analyses provide growing evidence of the influence of positive selection acting in the ancestors of modern humans. Additionally, the best way to explain current fluctuations in neutral variation across the genome is by including negative selection against a high rate of deleterious mutants. We suggest that explaining these predicted high deleterious mutation rates in humans could require the inclusion of additional factors, such as inbreeding and prezygotic selection, in addition to rank-order selection and fitness interactions among mutations. We also suggest that some forms of selection, rather than being relaxed in modern humans, are probably still acting and might intensify in the near future, and make some predictions about the next several millennia of human evolution.     

Molecular evolution: concepts and the origin of disciplines

This paper focuses on the consolidation of Molecular Evolution, a field originating in the 1960s at the interface of molecular biology, biochemistry, evolutionary biology, biophysics and studies on the origin of life and exobiology. The claim is made that Molecular Evolution became a discipline by integrating different sorts of scientific traditions: experimental, theoretical and comparative. The author critically incorporates Timothy Lenoir’s treatment of disciplines (1997), as well as ideas developed by Stephen Toulmin (1962) on the same subject. On their account disciplines are spaces where the social and epistemic dimensions of science are deeply and complexly interwoven. However, a more detailed account of discipline formation and the dynamics of an emerging disciplinary field is lacking in their analysis. The present essay suggests focusing on the role of scientific concepts in the double configuration of disciplines: the social/political and the epistemic order. In the case of Molecular Evolution the concepts of molecular clock and informational molecules played a central role, both in differentiating molecular from classical evolutionists, and in promoting communication between the different sorts of traditions integrated in Molecular Evolution. The paper finishes with a reflection on the historicity of disciplines, and the historicity of our concepts of disciplines.     

Livestock-associated Staphylococcus aureus: origin, evolution and public health threat

Staphylococcus aureus is a major pathogen responsible for severe nosocomial and community-associated infections of humans and infections of economically important livestock species. In recent years, studies into livestock-associated S. aureus including methicillin-resistant (MRSA) strains have provided new information regarding their origin and host adaptation, and their capacity to cause zoonotic infections of humans. Furthermore, a potential role for human activities such as domestication and industrialisation in the emergence of S. aureus clones affecting livestock has been highlighted. Here, I summarise recent developments in this emerging field and suggest questions of importance for future research efforts.     

Human enterobiasis in evolution: origin, specificity and transmission.

The co-evolutionary pathway seems to be the most plausible hypothesis for the explanation of the origin of human pinworms. Of the two modes of transmission of oxyurids among humans which have been documented, the direct oral/anal route is also observed in other Primates and seems to have been favoured by selection. As indirect air-borne transmission has also been shown for human enterobiasis, the question of "How this alternative to the standard transmission method could have arisen" is examined. The results of comparative studies of prevalence of Enterobius in human coprolites, in villages of Neolithic age of the arid west of North America, show that a higher prevalence of pinworms is correlated with the lower total amount of air-exchange in caves relative to other structures. The air-borne route of transmission of pinworms among humans is interpreted as an innovation in the human/Enterobius pair. This mode of transfer could have been favoured during the time when humans changed their behaviour from a hunting-gathering to a more sedentary existence, initially associated with cave habitats.     

Tracking evolution of urban biogeochemical cycles: past,present, and future

This overview and synthesis paper focuses on the evolution of urban biogeochemical cycles across time. We synthesize empirical data and review existing literature, including papers in this special issue, and we propose the concept of “urban evolution.” The built environment often changes quickly in response to human activities, thus contributing to an urban evolution that affects structure, function, and ecosystem services of human settlements over time. Depending upon management, these changes can result in rapid losses of ecosystem functions/services or progress towards restoration. We explore urban evolution through empirical examples such as: (1) land development and nitrogen inputs within a metropolitan region over half a century; (2) watershed drainage by different forms of stormwater management over decades; (3) human-accelerated weathering in urbanized watersheds over decades; and (4) global salinization of freshwater across urbanizing landscapes over a century. We also synthesize concepts relevant to studying urban evolution of infrastructure and ecosystems including: (1) urban watersheds have challenged our whole notion of the “watershed approach” due to complex hydrologic boundaries and flow paths over time; (2) the urban hydrologic cycle evolves due to changing infrastructure and human water use over time; (3) the importance of extending research beyond individual sites using an urban watershed approach over space and time; (4) salinization as a universal tracer of watershed urbanization over time; (5) human-accelerated weathering of concrete and construction materials contributing to an “urban karst” over time; (6) human alteration of the carbon cycle in urban watersheds over time; and (7) detecting distinct biogeochemical signatures across cities globally over time. Our synthesis and this special issue suggest that urban biogeochemical cycles have exerted a major influence on the elemental composition of the Earth’s surface from local to global scales. A new global research agenda is needed to track the evolution of urban biogeochemical cycles as land development proceeds and infrastructure/management changes so we can better evaluate potential losses in ecosystem services, set realistic watershed and river restoration goals, and formulate effective environmental policy for Earth’s growing urban population.     

Population heterogeneity in microbial bioprocesses: origin,analysis, mechanisms,and future perspectives

Bioprocess and Biosystems Engineering - Population heterogeneity is omnipresent in all bioprocesses even in homogenous environments. Its origin, however, is only so well understood that potential...     

寄生虫的起源与进化

介绍了寄生虫的提前适应机制在寄生虫起源与进化中的重要作用,同时还推测了寄生虫可能的进化过程,并且阐述了寄生虫对寄生生活的适应对策以及对宿主行为的改变。