Balinese Water Temples and the Management of Irrigation

Bali has figured prominently in debates on the question of whether irrigation centralizes state power. New evidence shows that irrigation is actually organized by networks of water temples that constitute an institutional system separate from the state. Earlier attempts to identify a discrete system of irrigation management misconceived the problem. For most crops, irrigation simply provides water for the plant's roots. But in a Balinese rice terrace, water is used to construct a complex, pulsed artificial ecosystem. Water temples manipulate the states of the system, at ascending levels in regional hierarchies. The permanence of water temple networks contrasts sharply with the instability of the traditional Balinese states. Since the water temples are real, perhaps it is the Balinese state that is chimerical.     

Reply to My Critics: A Response to Reviews of Darwin's Black Box: The Biochemical Challenge to Evolution

In Darwin's Black Box: The BiochemicalChallenge to Evolution I argued thatpurposeful intelligent design, rather thanDarwinian natural selection, better explainssome aspects of the complexity that modernscience has discovered at the molecularfoundation of life. In the five years since itspublication the book has been widely discussedand has received considerable criticism. Here Irespond to what I deem to be the mostfundamental objections. In the first part ofthe article I address empirical criticismsbased on experimental studies alleging eitherthat biochemical systems I discussed are notirreducibly complex or that similar systemshave been demonstrated to be able to evolve byDarwinian processes. In the remainder of thearticle I address methodological concerns,including whether a claim of intelligent designis falsifiable and whether intelligent designis a permissible scientific conclusion.     

A Treasure Chest of Balinese Images

Book reviewed in this article:
Images of Power: Balinese Paintings Made for Gregory Bateson and Margaret Mead . Hildred Geertz.     

The Functional Response of B Cells to Antigenic Stimulation: A Preliminary Report of Latent Tuberculosis

Mycobacterium tuberculosis (M.tb) remains a successful pathogen, causing tuberculosis disease numbers to constantly increase. Although great progress has been made in delineating the disease, the host-pathogen interaction is incompletely described. B cells have shown to function as both effectors and regulators of immunity via non-humoral methods in both innate and adaptive immune settings. Here we assessed specific B cell functional interaction following stimulation with a broad range of antigens within the LTBI milieu. Our results indicate that B cells readily produce pro- and anti-inflammatory cytokines (including IL-1β, IL-10, IL-17, IL-21 and TNF-α) in response to stimulation. TLR4 and TLR9 based stimulations achieved the greatest secreted cytokine-production response and BCG stimulation displayed a clear preference for inducing IL-1β production. We also show that the cytokines produced by B cells are implicated strongly in cell-mediated communication and that plasma (memory) B cells (CD19⁺CD27⁺CD138⁺) is the subset with the greatest contribution to cytokine production. Collectively our data provides insight into B cell responses, where they are implicated in and quantifies responses from specific B cell phenotypes. These findings warrant further functional B cell research with a focus on specific B cell phenotypes under conditions of active TB disease to further our knowledge about the contribution of various cell subsets which could have implications for future vaccine development or refined B cell orientated treatment in the health setting.     

Emergent Properties of Balinese Water Temple Networks: Coadaptation on a Rugged Fitness Landscape

For over a thousand years, generations of Balinese farmers have gradually transformed the landscape of their island, clearing forests, digging irrigation canals, and terracing hillsides to enable themselves and their descendants to grow irrigated rice. Paralleling the physical system of terraces and irrigation works, the Balinese have also constructed intricate networks of shrines and temples dedicated to agricultural deities. Ecological modeling shows that water temple networks can have macroscopic effects on the topography of the adaptive landscape, and may be representative of a class of complex adaptive systems that have evolved to manage agroecosystems.     

嗜热菌Lon蛋白酶的逆境应答作用及其功能分析

Lon蛋白水解酶广泛存在于微生物以及动植物体内.它除了水解蛋白质的功能以外,还参与到细胞生理过程的调节当中.以嗜热栖热菌HB8(Thermus thermophilus HB8)的Lon蛋白酶(TTLon)及其两个片段TTlonL和TTlonS为研究对象,采用RT-PCR技术证明了TTLon在嗜热栖热菌HB8的逆境应答过程中发挥着重要作用,它的蛋白酶活性是受到Mg2+影响的,失去C端的TTlonL和TTlonS没有了蛋白水解酶活性和分子伴侣活性,但是它们仍然具有一定的ATP结合能力.     

Critical Role of TLR2 and MyD88 for Functional Response of Macrophages to a Group IIA-Secreted Phospholipase A2 from Snake Venom

The snake venom MT-III is a group IIA secreted phospholipase A₂ (sPLA₂) enzyme with functional and structural similarities with mammalian pro-inflammatory sPLA₂s of the same group. Previously, we demonstrated that MT-III directly activates the innate inflammatory response of macrophages, including release of inflammatory mediators and formation of lipid droplets (LDs). However, the mechanisms coordinating these processes remain unclear. In the present study, by using TLR2^−/− or MyD88^−/− or C57BL/6 (WT) male mice, we report that TLR2 and MyD88 signaling have a critical role in MT-III-induced inflammatory response in macrophages. MT-III caused a marked release of PGE₂, PGD₂, PGJ₂, IL-1β and IL-10 and increased the number of LDs in WT macrophages. In MT-III-stimulated TLR2^−/− macrophages, formation of LDs and release of eicosanoids and cytokines were abrogated. In MyD88^−/− macrophages, MT-III-induced release of PGE₂, IL-1β and IL-10 was abrogated, but release of PGD₂ and PGJ₂ was maintained. In addition, COX-2 protein expression seen in MT-III-stimulated WT macrophages was abolished in both TLR2^−/− and MyD88^−/− cells, while perilipin 2 expression was abolished only in MyD88^−/− cells. We further demonstrated a reduction of saturated, monounsaturated and polyunsaturated fatty acids and a release of the TLR2 agonists palmitic and oleic acid from MT-III-stimulated WT macrophages compared with WT control cells, thus suggesting these fatty acids as major messengers for MT-III-induced engagement of TLR2/MyD88 signaling. Collectively, our findings identify for the first time a TLR2 and MyD88-dependent mechanism that underlies group IIA sPLA₂-induced inflammatory response in macrophages.     

Functional Adaptation in Female Rats: The Role of Estrogen Signaling

Background

Sex steroids have direct effects on the skeleton. Estrogen acts on the skeleton via the classical genomic estrogen receptors alpha and beta (ERα and ERβ), a membrane ER, and the non-genomic G-protein coupled estrogen receptor (GPER). GPER is distributed throughout the nervous system, but little is known about its effects on bone. In male rats, adaptation to loading is neuronally regulated, but this has not been studied in females.

Methodology/Principal Findings

We used the rat ulna end-loading model to induce an adaptive modeling response in ovariectomized (OVX) female Sprague-Dawley rats. Rats were treated with a placebo, estrogen (17β-estradiol), or G-1, a GPER-specific agonist. Fourteen days after OVX, rats underwent unilateral cyclic loading of the right ulna; half of the rats in each group had brachial plexus anesthesia (BPA) of the loaded limb before loading. Ten days after loading, serum estrogen concentrations, dorsal root ganglion (DRG) gene expression of ERα, ERβ, GPER, CGRPα, TRPV1, TRPV4 and TRPA1, and load-induced skeletal responses were quantified. We hypothesized that estrogen and G-1 treatment would influence skeletal responses to cyclic loading through a neuronal mechanism. We found that estrogen suppresses periosteal bone formation in female rats. This physiological effect is not GPER-mediated. We also found that absolute mechanosensitivity in female rats was decreased, when compared with male rats. Blocking of adaptive bone formation by BPA in Placebo OVX females was reduced.

Conclusions

Estrogen acts to decrease periosteal bone formation in female rats in vivo. This effect is not GPER-mediated. Gender differences in absolute bone mechanosensitivity exist in young Sprague-Dawley rats with reduced mechanosensitivity in females, although underlying bone formation rate associated with growth likely influences this observation. In contrast to female and male rats, central neuronal signals had a diminished effect on adaptive bone formation in estrogen-deficient female rats.     

Response of Tea Plants to Water Stress

Two-year-old potted plants of six Camellia sinensis cultivars (TV-18, TV-26, UPASI-3, UPASI-26, T-78 and HV-39) were subjected to water stress for 4, 8 and 12 d. Relative water content (RWC) of leaves of all cultivars declined with water stress, but in the two drought tolerant cultivars (UPASI-3 and UPASI-26), higher RWC were maintained in comparison to the others. Phenol content and activities of phenylalanineammonialyase, polyphenoloxidase and peroxidase initially increased, but decreased during extended drought. Chlorophyll contents decreased, whereas proline contents increased during water stress. SDS-PAGE analysis of proteins revealed increased accumulation of proteins of intermediate molecular masses (42 – 44 kDa) and low molecular masses (14 – 26 kDa). After 12 d of water stress, most of these proteins disappeared in T-78 and HV-39, but in the other cultivars they were still detectable.     

Plant Functional Traits Show Non-Linear Response to Grazing

The trait-based approach aims to detect functional patterns in vegetation beyond specific sites or taxa. In most cases, plant traits are assumed to be linearly related to environmental gradients such as grazing intensity. To generalize results beyond specific sites, it is important to know to which extent environment-trait relationships are non-linear. Non-linearity can be a source of inconsistency among different studies according to length and studied portion of a gradient. In this study, we test if and to what extent traits relate non-linearly to a grazing gradient using data from a grassland-matorral interface in the Mediterranean rangeland of “La Crau” (SE France). Because quantification of grazing by itinerant sheep flocks is difficult, we use a marker plant, Phillyrea angustifolia, and several independent pasture indicators to estimate grazing intensity. First, we related traits to grazing using a multivariate three-table ordination method (RLQ), which assumes linear reactions of traits. To evaluate the importance of non-linearity, we applied generalized additive models (GAMs) to our data. This revealed that a third of traits studied here showed non-linear relationships to grazing. These non-linear responses cover a large spectrum including seed mass, life form, phenology dispersal- and leaf traits. The high part of non-linear relations compromises a general assumption of linear trait-environment relationships. Future works should therefore more often consider non-linear relationships using methods with no constraints on shape of response, e.g., GAM in the analysis of functional trait studies. In this way, non-linear relationships can reveal new aspects of species and community response to global change and deepen our understanding of trait-environment relations.     

The Role of the Immune Response in the Pathogenesis of Thyroid Eye Disease: A Reassessment

Background

Although thyroid eye disease is a common complication of Graves’ disease, the pathogenesis of the orbital disease is poorly understood. Most authorities implicate the immune response as an important causal factor. We sought to clarify pathogenesis by using gene expression microarray.

Methods

An international consortium of ocular pathologists and orbital surgeons contributed formalin fixed orbital biopsies. RNA was extracted from orbital tissue from 20 healthy controls, 25 patients with thyroid eye disease (TED), 25 patients with nonspecific orbital inflammation (NSOI), 7 patients with sarcoidosis and 6 patients with granulomatosis with polyangiitis (GPA). Tissue was divided into a discovery set and a validation set. Gene expression was quantified using Affymetrix U133 Plus 2.0 microarrays which include 54,000 probe sets.

Results

Principal component analysis showed that gene expression from tissue from patients with TED more closely resembled gene expression from healthy control tissue in comparison to gene expression characteristic of sarcoidosis, NSOI, or granulomatosis with polyangiitis. Unsupervised cluster dendrograms further indicated the similarity between TED and healthy controls. Heat maps based on gene expression for cytokines, chemokines, or their receptors showed that these inflammatory markers were associated with NSOI, sarcoidosis, or GPA much more frequently than with TED.

Conclusion

This is the first study to compare gene expression in TED to gene expression associated with other causes of exophthalmos. The juxtaposition shows that inflammatory markers are far less characteristic of TED relative to other orbital inflammatory diseases.