Estimates of protozoan- and viral-mediated mortality of bacterioplankton in Lake Bourget (France)

1. We performed three, 1‐week in situ experiments in March‐April (expt 1), May (expt 2) and August (expt 3) 2003 in order to assess protozoan and virus‐induced mortality of heterotrophic bacteria in a French lake. Viral and bacterial abundances were obtained using flow cytometry (FCM) while protozoa were counted using epifluorescence microscopy (EFM). 2. A dilution approach, applied to pretreated grazer‐free samples, allowed us to estimate that viral lysis could be responsible for 60% (expt 1), 35% (expt 2) and 52% (expt 3) of daily heterotrophic bacterial mortality. Flagellate (both mixotrophic and heterotrophic) grazing in untreated samples, was responsible for 56% (expt 1), 63% (expt 2) and 18% (expt 3) of daily heterotrophic bacteria removal. 3. These results therefore suggest that both viral lysis and flagellate grazing had a strong impact on bacterial mortality, and this impact varied seasonally. 4. From parallel transmission electron microscopy (TEM) analysis, we found that the burst size (i.e. the number of viruses potentially released per lysed cell) ranged from nine to 25 (expt 1), 10 to 35 (expt 2) and eight to 25 (expt 3). The percentage of infected heterotrophic bacteria was 5.7% (expt 1), 3.4% (expt 2) and 5.7% (expt 3) so that the calculated percentage of bacterial mortality induced by viruses was 6.3% (expt 1), 3.7% (expt 2) and 6.3% (expt 3). 5. It is clear that the dilution‐FCM and TEM methods yielded different estimates of viral impact, although both methods revealed an increased impact of viruses during summer.     

洪潮江水库浮游细菌群落空间分布及其与环境因子的关系

【目的】为了解洪潮江水库浮游细菌群落组成、空间分布及其与环境因子的相互作用关系。【方法】基于16S rRNA基因高通量测序技术,对洪潮江水库浮游细菌群落结构与多样性进行了分析,同步对水体的理化指标进行检测。【结果】洪潮江水库共注释浮游细菌28门79纲168目243科325属85种。优势门为变形菌门、放线菌门、蓝细菌门、疣微菌门、拟杆菌门、浮霉菌门,分别占比21.95%、21.30%、17.98%、12.27%、11.72%、9.51%。基于Bray-Curtis距离的PCoA分析表明,洪潮江水库9个采样点可以被分为3组,细菌群落呈现沿上下游梯度变化的趋势。perMANOVA检验显示,各组差异显著,但是各组的多样性指数没有显著性差异。Mantel分析表明,透明度、浊度、总磷、亚硝酸盐氮、硝酸盐氮、叶绿素a、pH、溶解氧、氧化还原电位、比电导、总溶解固体以及营养状态会显著影响浮游细菌群落结构。【结论】洪潮江水库浮游细菌空间分布特征是自然环境理化因子和农业活动综合作用的结果。研究结果对了解浮游细菌群落空间格局及其对人类活动的响应,以及水库管理具有科学参考价值。     

Spatial and temporal distribution of virioplankton and bacterioplankton in a Brackish Environment (Lake of Ganzirri,Italy)

Temporal and spatial changes of viral and bacterial abundance were examined in relation to environmental factors and hydrography at five stations between May 2000 and July 2001 in the brackish lake of Ganzirri (Sicily, Italy). Virioplankton abundance ranged from 5.26 × 10⁴ to 7.54 × 10⁸VLP ml^–1 (on average 1.38 × 10⁸particles ml^–1) and was significantly higher at the three eutrophic stations located in the lake of Ganzirri (Stations 1, 2, and 3) than in the channel connecting the lake with the Straits of Messina. The virus-to-bacterium abundance ratio (VBR range, 0.4–117; average:14) showed the highest values in channel connecting the lake of Ganzirri with the meromictic lake of Faro. VBR values <1.0 were found in summer 2000 in relation with peculiar hydrographic constraints. Virioplankton distribution was dependent on salinity, and on dilution of the oligotrophic waters flowing from the Straits. Virioplankton was closely related with bacterioplankton indicating a close coupling between viruses and host cell abundance.     

Nearly a decade‐long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan,China)

Uncovering which environmental factors govern community diversity patterns and how ecological processes drive community turnover are key questions related to understand the community assembly. However, the ecological mechanisms regulating long‐term variations of bacterioplankton communities in lake ecosystems remain poorly understood. Here we present nearly a decade‐long study of bacterioplankton communities from the eutrophic Lake Donghu (Wuhan, China) using 16S rRNA gene amplicon sequencing with MiSeq platform. We found strong repeatable seasonal diversity patterns in terms of both common (detected in more than 50% samples) and dominant (relative abundance >1%) bacterial taxa turnover. Moreover, community composition tracked the seasonal temperature gradient, indicating that temperature is a key environmental factor controlling observed diversity patterns. Total phosphorus also contributed significantly to the seasonal shifts in bacterioplankton composition. However, any spatial pattern of bacterioplankton communities across the main lake areas within season was overwhelmed by their temporal variabilities. Phylogenetic analysis further indicated that 75%–82% of community turnover was governed by homogeneous selection due to consistent environmental conditions within seasons, suggesting that the microbial communities in Lake Donghu are mainly controlled by niche‐based processes. Therefore, dominant niches available within seasons might be occupied by similar combinations of bacterial taxa with modest dispersal rates throughout different lake areas.     

A 2-year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France)

Despite the considerable attention that has been paid to bacterioplankton over recent decades, the dynamic of aquatic bacterial community structure is still poorly understood, and long-term studies are particularly lacking. Moreover, how the environment governs diversity patterns remains a key issue in aquatic microbial ecology. In this study, we used denaturing gradient gel electrophoresis of PCR-amplified partial 16S rRNA gene fragments and multivariable statistical approaches to explore the patterns of change in the free-living bacterial community in the mesotrophic and mono-meromictic Lake Bourget (France). A monthly sampling was conducted over two consecutive years (2007 and 2008) and at two different depths characterizing the epi- and hypolimnion of the lake (2 and 50 m, respectively). Temporal shifts in the bacterial community structure followed different patterns according to depth, and no seasonal reproducibility was recorded from 1 year to the next. Our results showed that the bacterial community structure displayed lower diversity at 2 m (22 bands) compared to 50 m (32 bands) and that bacterial community structure dynamics followed dissimilar trends between the two depths. At 2 m, five shifts in the bacterial community structure occurred, with the temporal scale varying between 2 and 8 months whereas, at 50 m, four shifts in the bacterial community structure took place at 50 m, with the temporal scale fluctuating between 3 and 13 months. More than 60% of the bacterial community structure variance was explained by seven variables at 2 m against eight at 50 m. Nutrients (PO₄-P, NH₄-N and NO₃-N) and temperature were responsible for 49.6% of the variance at 2 m whereas these nutrients, with dissolved oxygen and chlorophyll a accounting for 59.6% of the variance at 50 m. Grazing by ciliates played also a critical role on the bacterial community structure at both depths. Our results suggest that the free-living bacterial community structure in the epi- and hypolimnion of Lake Bourget is mainly driven by combined, but differently weighted, top-down and bottom-up factors at 2 and 50 m.     

Primary production and phytoplankton composition in relation to DOC input and bacterioplankton production in humic Lake Örträsket

1. The biomass and production of picophytoplankton, large phytoplankton and heterotrophic bacterioplankton were measured in humic Lake Örträsket, northern Sweden during four consecutive summers.
2. High flow episodes, carrying fresh dissolved organic carbon (DOC) into the lake, always stimulated heterotrophic bacterial production at the expense of primary production. Primary production never exceeded bacterial production for approximately 20 days after such an episode had replenished epilimnial DOC. We suggest that allochthonous DOC is an energy source that stimulates bacterioplankton that, because of their efficient uptake of inorganic nutrients, are then able to outcompete phytoplankton. After the exhaustion of readily available DOC, phytoplankton were able to dominate epilimnion production in Lake Örträsket.
3. Biomass production was higher when dominated by phytoplankton than by bacterioplankton, despite a similar utilization of nutrients in the epilimnion throughout the summer. We propose that different C : N : P ratios of bacterioplankton and phytoplankton permit the latter to produce more carbon (C) biomass per unit of available inorganic nutrients than bacterioplankton.     

Temporal and spatial variability in nearshore bacterioplankton communities of Lake Michigan

The spatial and temporal variability of bacterial communities were determined for the nearshore waters of Lake Michigan, an oligotrophic freshwater inland sea. A freshwater estuary and nearshore sites were compared six times during 2006 using denaturing gradient gel electrophoresis (DGGE). Bacterial composition clustered by individual site and date rather than by depth. Seven 16S rRNA gene clone libraries were constructed, yielding 2717 bacterial sequences. Spatial variability was detected among the DGGE banding patterns and supported by clone library composition. The clone libraries from deep waters and the estuary environment revealed highest overall bacterial diversity. Betaproteobacteria sequence types were the most dominant taxa, comprising 40.2–67.7% of the clone libraries. BAL 47 was the most abundant freshwater cluster of Betaproteobacteria , indicating widespread distribution of this cluster in the nearshore waters of Lake Michigan. Incertae sedis 5 and Oxalobacteraceae sequence types were prevalent in each clone library, displaying more diversity than previously described in other freshwater environments. Among the Oxalobacteraceae sequences, a globally distributed freshwater cluster was determined. The nearshore waters of Lake Michigan are a dynamic environment that experience forces similar to the coastal ocean environment and share common bacterial diversity with other freshwater habitats.     

Spatial variations in the composition and abundance of zooplankton in the Bahir Dar Gulf of Lake Tana, Ethiopia

The zooplankton in the littoral and open water zones of Bahir Dar Gulf, Lake Tana, collected in June and July 2007, were investigated using basic statistical measurement of diversity indices and one way analysis of variance to characterize the zooplankton fauna, with respect to its composition, abundance and spatial distribution patterns. The zooplankton composition was typical of a tropical freshwater lake, with a total of 44 species made up of sixteen rotifers, sixteen c1adocerans and twelve copepods and their developing stages in the following order of dominance; Rotifera > Cladocera > Cylopoida > Calanoida. Variation in spatial distribution was noticeable, the abundance of zooplankton was significantly higher ( P  < 0.05) at the littoral zone (Stations 2 and 3) than the open water (Station 1) as a result of the preponderance of the small-bodied nauplii stages, small rotifers and c1adocerans particularly Bosmina longirostris . Species richness, evenness, and diversity also increased as abundance increased in the littoral zones of the lake. The rotifers, particularly the brachionids Keratella and Brachionus spp., which are considered good indicators of lake trophic status constituted the dominant zooplankton group in terms of abundance and diversity, thus indicating that the lake has a high fisheries potential.     

The composition and abundance of phytoplankton in Lake Bukoni,western Uganda

Lake Bukoni is one of the crater lakes in western Uganda. Investigations into this lake is limited compared to other African lakes. Data on phytoplankton ecology in the lake are lacking. Phytoplankton consists of a community of photosynthetic, microscopic plants adapted to suspension in water. They constitute ‘hidden flora’ which make an important contribution to the primary productivity of a water mass. Some phytoplankton taxa, among them species belonging to Cyanophyta, are known to influence ecological transformations and to cause health hazards in water bodies that are used by humans. From July 2004 to December 2005, phytoplankton was collected from two sites (inshore and offshore) in Lake Bukoni. An inverted microscope, Sedgwick counting chamber and multiple tally denominator were used to quantify the phytoplankton. Phytoplankton was dominated by nonheterocystous cyanoprokaryotes especially Lyllgbya limnetica followed by the diatoms Synedra ulna and Fragillaria mutabilis. The inshore site had more phytoplankton species. Differences in phytoplankton diversity and density were mainly attributed to mixing and presence of macrophytes. The occurrence of large numbers of cyanoprokaryotes poses a potential health hazard to the local people who utilize the water from Lake Bukoni. The dominance of cyanoprokaryotes might result in ecological transformations like loss of biodiversity.     

象山港电厂温排水增温对浮游细菌群落空间分布的影响

沿海电厂产生的温排水已造成了较严重的环境问题,如生物病害和赤潮暴发频率增加。现有研究多关注温排水增温对浮游动、植物多样性的影响,而缺乏在物质能量循环过程起核心纽带作用的微生物对增温的响应和反馈。考虑到生态系统对增温的反馈取决于浮游植物的初级生产力和微生物异养呼吸之间的平衡,利用Illumina测序技术结合水体理化性质研究了象山港电厂温排水增温梯度下浮游细菌的空间分布特征。温排水预期的海水增温显著地增加了水体中硝氮(P=0.041,单因素方差分析)、化学需氧量(P0.001)、油污(P=0.004)和余氯(P=0.003)的浓度;但降低了溶解氧(P=0.034)和叶绿素a(P=0.045)的含量。此外,相似性分析发现温排水增温显著地(r=0.338;P=0.042)改变了浮游细菌群落结构,空间分布遵循空间距离-群落相似性衰减(r=-0.582;P=0.026)模型,周转速率为0.0013。细菌多样性主要受水体溶解氧、化学需要量和叶绿素a的影响,分别控制了34.6%、20.1%和10.0%的多样性变异。冗余分析(RDA)群落变异主要受环境因子(包括温度、油污、溶解氧和叶绿素a)的影响,一共解释了55.6%的群落变异;增温仅解释了4.8%的群落变异。因此,浮游细菌群落结构主要受环境因子的影响,这种各因子对群落变异相对贡献比例的特征与增温主要通过改变水质和浮游植物特征,以间接作用影响细菌群落组成的观念一致。此外,细菌多样性和群落组成受不同环境因子的驱动。相比而言,空间距离只控制了较小比例的群落变异(7.1%)。此外,筛选到11个细菌科,这些科的相对丰度与增温幅度显著相关,变化特征与各科已知的生态功能相吻合,如海洋螺菌科(Oceanospirillaceae)中有些菌株能够降解石油污染物,其相对丰度在高油污浓度站点增加(油污浓度与增温幅度正相关,r=0.558;P=0.030);嗜温的弧菌科相对丰度与增温幅度正相关。综上,研究结果初步明确了浮游细菌群落对电厂温排水增温的响应特征,并筛选到敏感的细菌科来指示和预测增温对生态功能的潜在影响。     

Contribution of mathematical modeling to lake ecosystem understanding: Lake Bourget (Savoy,France)

This paper demonstrates how mathematical modeling can contribute to improve understanding of lake behavior. Since the 60's Lake Bourget, one of the largest in France, had been suffering from eutrophication which was checked in 1980 by the diversion of the main sewers entering the lake. A research program was implemented between 1987 and 1990, including an on-site sampling campaign conducted concurrently with thermal and biogeochemical modeling of lake behavior. The model helped provide a better understanding of the ecosystem, displaying some processes hitherto misunderstood: (1) Winter overturn does not reach the bottom of the water column when the weather is mild. This leads to a incomplete reoxygenation of the hypolimnion and to redox conditions inducing the release of orthophosphate from the sediment, (2) Grazing by herbivorous zooplankton is getting more important in the control of spring algal growth as eutrophication of the lake regresses, (3) Settling of particulate phosphorus seems a complex and very important process in Lake Bourget, showing high sedimentation rates for particulate mineral phosphorus.     

Influence of dissolved organic matter source on lake bacterioplankton structure and function--implications for seasonal dynamics of community composition

It has been suggested that autochthonous (internally produced) organic carbon and allochthonous (externally produced) organic carbon are utilized by phylogenetically different bacterioplankton. We examined the relationship between the source of organic matter and the structure and function of lake bacterial communities. Differences and seasonal changes in bacterial community composition in two lakes differing in their source of organic matter were followed in relation to environmental variables. We also performed batch culture experiments with amendments of various organic substrates, namely fulvic acids, leachates from algae, and birch and maple leaves. Differences in bacterial community composition between the lakes, analysed by terminal restriction fragment length polymorphism, correlated with variables related to the relative loading of autochthonous and allochthonous carbon (water colour, dissolved organic carbon, nutrients, and pH). Seasonal changes correlated with temperature, chlorophyll and dissolved organic carbon in both lakes. The substrate amendments led to differences in both structure and function, i.e. production, respiration and growth yield, of the bacterial community. In conclusion, our results suggest that the source of organic matter influences community composition both within and among lakes and that there may be a coupling between the structure and function of the bacterial community.     

浙闽沿海生态牧场技术示范区浮游细菌群落和功能的时空变化

【目的】本文通过不同季节的4个航次调查研究了2个浙闽沿海生态牧场技术示范区的浮游细菌群落的变化,揭示了示范区菌群结构的时空变化,探究其对于海洋生态系统的潜在影响。【方法】使用16SrRNA基因扩增子测序技术,对2个示范区4个季节航次共128个样点中浮游细菌的16SrRNA基因V4区序列进行测序,并通过分析其组成和多样性,借助FAPROTAX功能预测,分析不同季节和示范区浮游细菌的差异。【结果】128个样品量化后共获得2510976条优质序列,2个示范区的主要优势浮游细菌类群均为α变形菌纲、γ变形菌纲、β变形菌纲、放线菌纲、黄杆菌纲等,2个示范区浮游细菌的α多样性指数随季节演替而产生波动,且大多数环境因子都与其具有显著相关性;浙闽沿海浮游细菌的群落构建过程随时空变化而产生差异,扩散限制是2个示范区浮游细菌群落构建过程中占比最大的生态过程(除台山岛示范区秋季),2个示范区多数季节的浮游细菌群落相似性基于Bray-Curtis的地理距离衰减印证了这一点;基于FAPROTAX功能预测得到的2个示范区浮游细菌的功能以化能异养和氮硫循环为主,从一定程度上与当地的环境因子变化相关联。【结论】浙闽沿海...     

Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient

Few studies of microbial biogeography address variability across both multiple habitats and multiple seasons. Here we examine the spatial and temporal variability of bacterioplankton community composition of the Columbia River coastal margin using 16S amplicon pyrosequencing of 300 water samples collected in 2007 and 2008. Communities separated into seven groups (ANOSIM, P<0.001): river, estuary, plume, epipelagic, mesopelagic, shelf bottom (depth<350 m) and slope bottom (depth>850 m). The ordination of these samples was correlated with salinity (ρ=−0.83) and depth (ρ=−0.62). Temporal patterns were obscured by spatial variability among the coastal environments, and could only be detected within individual groups. Thus, structuring environmental factors (for example, salinity, depth) dominate over seasonal changes in determining community composition. Seasonal variability was detected across an annual cycle in the river, estuary and plume where communities separated into two groups, early year (April–July) and late year (August–Nov), demonstrating annual reassembly of communities over time. Determining both the spatial and temporal variability of bacterioplankton communities provides a framework for modeling these communities across environmental gradients from river to deep ocean.     

象山港网箱养殖区与非养殖区的细菌群落分布

近海集约化养殖是导致我国近海污染的主要来源之一。浮游细菌在近海生态系统的物质循环过程中发挥重要作用,研究海洋浮游细菌群落对养殖活动的响应,对于指示和评价海水养殖生态系统健康具有重要意义。采集了象山港网箱养殖区与非养殖区3个深度,包括表层(0.5 m)、中层(2.5 m)、底层(8.0 m)的水样,利用焦磷酸测序技术测定16S rRNA基因,研究浮游细菌的群落结构和多样性。结果表明:网箱养殖活动不仅使得附近区域水体理化性质发生改变,如化学需氧量浓度显著高于非养殖区域,而且显著地(P0.05)改变了浮游细菌的群落结构,但不同深度间群落结构和多样性的差异不显著。网箱养殖区和非养殖区中主要浮游细菌类群为α-变形菌(Alphaproteobacteria)、γ-变形菌(Gammaproteobacteria)、拟杆菌(Bacteroidetes)、放线菌(Actinobacteria)、β-变形菌(Betaproteobacteria)、ε-变形菌(Epsilonproteobacteria)和其它变形菌(Unclassified Proteobacteria),占细菌总序列数的98.64%。有些细菌类群的平均相对丰度从网箱区到非养殖区差异显著,如拟杆菌(P0.01)和放线菌(P0.05)显著降低,而γ-变形菌(P0.05)显著增加。相似度分析表明γ-变形菌、α-变形菌和拟杆菌是造成网箱区和非养殖区群落差异的主要类群,对群落差异总贡献率达到45.02%。偏冗余分析表明,影响细菌群落分布的主要环境因子有化学需氧量、磷酸盐、铵盐和总有机碳,共解释38.18%的群落变异,空间距离单独解释10.66%的群落变异。实验结果表明,养殖活动导致浮游细菌群落的改变,其中拟杆菌、放线菌和γ-变形菌的丰度显著变化,可能用于评价养殖水体的水质状况。     

退化盐沼湿地盐碱化空间变异与芦苇群落的演替关系

以苏打盐渍土区典型退化湿地为研究区,运用经典统计学和地统计学相结合的方法研究了退化湿地盐碱化指标: 土壤电导率(EC)、盐分含量(SC)、pH和钠吸附比(SAR)的空间变异特征,绘制了4种指标的空间分布图.结果表明:受结构性因素和随机性因素的共同作用,EC、pH、SC具有强空间相关性, SAR空间相关性不明显.Kriging插值结果表明:EC、pH、SC空间分布在一定范围内均存在空间上的相似性.盐碱化指标与芦苇生长指标相关分析结果表明: EC与株高、覆盖度、生物量都呈显著性相关,因此在盐碱化指标中EC是影响芦苇生长最重要因素.当pH＞10.1、EC＞0.4 mS cm-1、SC＞4604 mg kg-1时,植被由芦苇群落过渡为碱茅+芦苇群落,且随着盐碱化指标升高,芦苇所占比例减小.该研究为苏打盐渍土区植被恢复和盐碱地利用提供依据.     

转cry1 Ac/cpti基因水稻对土壤氨氧化细菌群落组成和丰度的影响

【背景】氨氧化细菌是驱动硝化作用的关键微生物,其群落多样性变化对土壤氮素转化具有重要意义。转基因作物可能通过根系分泌物和植株残体组成的改变对土壤微生物群落产生影响。【方法】本研究通过田间定位试验,利用特异引物进行PCR-DGGE（聚合酶链反应—变性梯度凝胶电泳）和荧光定量PCR,分析了种植转cry1 Ac/cpti双价抗虫基因水稻第3、4年土壤中氨氧化细菌群落组成和丰度的变化。【结果】水稻各生育期（分蘖期、齐穗期和成熟期）内,转cry1 Ac/cpti基因杂交稻Ⅱ优科丰8号（GM）的土壤氨氧化细菌16S rRNA基因群落组成、多样性指数与其对应的非转基因杂交稻Ⅱ优明恢86（CK）间均没有显著差异;以DGGE条带为基础的氨氧化细菌群落组成的冗余分析（RDA）显示,GM和CK的土壤氨氧化细菌群落组成只与水稻生育期存在显著相关性（P=0.002和0.018）;同时,水稻各生育期内土壤氨氧化细菌16S rRNA基因丰度在GM和CK间也没有显著差异,但均随水稻生长而变化且在齐穗期达到最高（P〈0.05）。【结论与意义】稻田土壤氨氧化细菌的群落组成与丰度在水稻不同生育期存在差异,但在转cry1 Ac/cpti基因水稻和非转基因水稻间没有显著差异,即一定时期内种植转cry1 Ac/cpti抗虫基因水稻不会影响土壤氨氧化细菌的群落组成和丰度。     

Viral abundance, production, decay rates and life strategies (lysogeny versus lysis) in Lake Bourget (France)

We have investigated the ecology of viruses in Lake Bourget (France) from January to August 2008. Data were analysed for viral and bacterial abundance and production, viral decay, frequency of lysogenic cells, the contribution of bacteriophages to prokaryotic mortality and their potential influence on nutrient dynamics. Analyses and experiments were conducted on samples from the epilimnion (2 m) and the hypolimnion (50 m), taken at the reference site of the lake. The abundance of virus‐like particles (VLP) varied from 3.4 × 10⁷ to 8.2 × 10⁷ VLP ml^?1; with the highest numbers and virus‐to‐bacterium ratio (VBR = 69) recorded in winter. Viral production varied from 3.2 × 10⁴ VLP ml^?1 h^?1 (July) to 2 × 10⁶ VLP ml^?1 h^?1 (February and April), and production was lower in the hypolimnion. Viral decay rate reached 0.12–0.15 day^?1, and this parameter varied greatly with sampling date and methodology (i.e. KCN versus filtration). Using transmission electron microscopy (TEM) analysis, viral lysis was responsible for 0% (January) to 71% (February) of bacterial mortality, while viral lysis varied between 0% (April) and 53% (January) per day when using a modified dilution approach. Calculated from viral production and burst size, the virus‐induced bacterial mortality varied between 0% (January) and 68% (August). A weak relationship was found between the two first methods (TEM versus dilution approach). Interestingly, flow cytometry analysis performed on the dilution experiment samples revealed that the viral impact was mostly on high DNA content bacterial cells whereas grazing, varying between 8.3% (June) and 75.4% (April), was reflected in both HDNA and LDNA cells equally. The lysogenic fraction varied between 0% (spring/summer) and 62% (winter) of total bacterial abundance, and increased slightly with increasing amounts of mitomycin C added. High percentages of lysogenic cells were recorded when bacterial abundance and activity were the lowest. The calculated release of carbon and phosphorus from viral lysis reached up to 56.5 µgC l^?1 day^?1 (assuming 20 fgC cell^?1) and 1.4 µgP l^?1 day^?1 (assuming 0.5 fgP cell^?1), respectively, which may represent a significant fraction of bacterioplankton nutrient demand. This study provides new evidence of the quantitative and functional importance of the virioplankton in the functioning of microbial food webs in peri‐alpine lakes. It also highlights methodologically dependent results.     

Limnological variability and pelagic fish abundance (Stolothrissa tanganicae and Lates stappersii) in Lake Tanganyika

The abundance of two main pelagic fish species in Lake Tanganyika (Stolothrissa tanganicae and Lates stappersii) has always been observed to fluctuate considerably at different time scales. The inverse correlation between the abundance of these species has often been interpreted as the consequence of predator−prey relations (avoidance behaviour by the prey). However, currently the two species often appear spatially segregated in the lake, S. tanganicae dominating in the north while L. stappersii is generally abundant in the south where it feeds mostly on shrimps. A fluctuating abundance of the species is nevertheless observed. As these fish species have a major importance for the fisheries, we investigated the limnological variability in relation to the short-term variability of fish catches. The abundance of S. tanganicae was positively correlated to plankton biomass (r = 0.65), while water transparency (r = 0.56), depth of mixed layer (r = −0.70) and oxygenated water appeared important drivers for the abundance of L. stappersii. Alternating “mixing” and “stable” states of the epilimnion related to seasonal and internal waves variability are probably determinant for the short-term variability in abundance of S. tanganicae and L. stappersii. In the framework of this study, remote sensing has shown a potentially interesting application for fisheries research at Lake Tanganyika. We observed a close correspondence between phytoplankton blooms at the time of trade winds changes and increased catches of S. tanganicae in the south. The anti-correlated abundance of S. tanganicae and L. stappersii probably mainly reflects the underlying fluctuating limnological environment. Fisheries studies need to integrate limnological and planktonic monitoring to better understand large and complex ecosystems such as Lake Tanganyika.