Effects of intermediate host genetic background on parasite transmission dynamics: a case study using Schistosoma mansoni

For parasites that require multiple hosts to complete their development, genetic interplay with one host may impact parasite transmission and establishment in subsequent hosts. In this study, we used microsatellite loci to address whether the genetic background of snail intermediate hosts influences life-history traits and transmission patterns of dioecious trematode parasites in their definitive hosts. We performed experimental Schistosoma mansoni infections utilizing two allopatric populations of Biomphalaria glabrata snails and assessed intensities and sex ratios of adult parasites in mouse definitive hosts. Our results suggest that the genetic background of hosts at one point in a parasite’s life cycle can influence the intensities and sex ratios of worms in subsequent hosts.     

How Fitness Reduced,Antimicrobial Resistant Bacteria Survive and Spread: A Multiple Pig - Multiple Bacterial Strain Model

More than 30% of E. coli strains sampled from pig farms in Denmark over the last five years were resistant to the commonly used antimicrobial tetracycline. This raises a number of questions: How is this high level sustained if resistant bacteria have reduced growth rates? Given that there are multiple susceptible and resistant bacterial strains in the pig intestines, how can we describe their coexistence? To what extent does the composition of these multiple strains in individual pigs influence the total bacterial population of the pig pen? What happens to a complex population when antimicrobials are used? To investigate these questions, we created a model where multiple strains of bacteria coexist in the intestines of pigs sharing a pen, and explored the parameter limits of a stable system; both with and without an antimicrobial treatment. The approach taken is a deterministic bacterial population model with stochastic elements of bacterial distributions and transmission. The rates that govern the model are process-oriented to represent growth, excretion, and uptake from environment, independent of herd and meta-population structures. Furthermore, an entry barrier and elimination process for the individual strains in each pig were implemented. We demonstrate how competitive growth between multiple bacterial strains in individual pigs, and the transmission between pigs in a pen allow for strains of antimicrobial resistant bacteria to persist in a pig population to different extents, and how quickly they can become dominant if antimicrobial treatment is initiated. The level of spread depends in a non-linear way of the parameters that govern excretion and uptake. Furthermore, the sampling of initial distributions of strains and stochastic transmission events give rise to large variation in how homogenous and how resistant the bacterial population becomes. Most important: resistant bacteria are demonstrated to survive with a disadvantage in growth rate of well over 10%.     

Babesia bovis: effects of cysteine protease inhibitors on in vitro growth

In the present study, we examined the effects of four kinds of cysteine protease inhibitors (E64, E64d, leupeptin, and ALLN) on the in vitro asexual growth of Babesia bovis. Of these, only the lipophilic inhibitors, E64d and ALLN, were found to effectively inhibit the growth of B. bovis. In further experiments, E64d, but not ALLN, significantly suppressed the parasite’s invasion of host erythrocytes, while both chemicals, especially ALLN, inhibited the parasite’s replication within the infected erythrocytes. These data suggested the presence of cysteine protease(s) derived from B. bovis, in which the protease(s) would play important roles in the erythrocyte invasion and/or replication processes of the parasite.     

Circadian variation in shedding of the oocysts of Isospora turdi (Apicomplexa) in blackbirds (Turdusmerula): An adaptative trait against desiccation and ultraviolet radiation

Many parasite species spend part of their life cycle in the external environment waiting for a new host. Emergence of parasites often occurs once a day, which may help to minimise mortality in an inhospitable environment and increase transition rates. Many intestinal parasites in birds are released in faeces only in the late afternoon. However, the adaptative significance of this pattern is unclear. One hypothesis is that a particular time of emergence may prevent parasite desiccation and therefore increase the parasite’s life expectancy in the external environment. We tested this hypothesis experimentally using the blackbird (Turdus merula) infected with Isospora turdi (Protozoa: Apicomplexa). We found that short exposure of faeces to natural sunlight has a dramatic effect on oocyst survival. This appears to be due to the effect of warmth and ultraviolet (UV) radiation with UVB waves being more damaging than UVA. Oocysts contained in faeces shed in water are protected from the effect of sunlight. Together, these results suggest that the release of oocysts in the late afternoon is an adaptative trait to avoid desiccation and UV radiation, thus reducing mortality of the oocysts in the external environment.     

The Plasmodium HU homolog, which binds the plastid DNA sequence-independent manner, is essential for the parasite’s survival

The nuclear genome of the human malaria parasite Plasmodium falciparum encodes a homolog of the bacterial HU protein (PfHU). In this study, we characterised PfHU’s physiological function. PfHU, which is targeted exclusively to the parasite’s plastid, bound its natural target - the plastid DNA - sequence-independently and complemented lack of HU in Escherichia coli. The HU gene could not be knocked-out from the genome of Plasmodium berghei, implying that HU is important for the parasite’s survival. As the human cell lacks the HU homolog, PfHU is a potential target for drugs to control malaria.     

High mortality and enhanced recovery: modelling the countervailing effects of disturbance on population dynamics

Disturbances cause high mortality in populations while simultaneously enhancing population growth by improving habitats. These countervailing effects make it difficult to predict population dynamics following disturbance events. To address this challenge, we derived a novel form of the logistic growth equation that permits time‐varying carrying capacity and growth rate. We combined this equation with concepts drawn from disturbance ecology to create a general model for population dynamics in disturbance‐prone systems. A river flooding example using three insect species (a fast life‐cycle mayfly, a slow life‐cycle dragonfly and an ostracod) found optimal tradeoffs between disturbance frequency vs. magnitude and a close fit to empirical data in 62% of cases. A savanna fire analysis identified fire frequencies of 3–4 years that maximised population size of a perennial grass. The model shows promise for predicting population dynamics after multiple disturbance events and for management of river flows and fire regimes.     

Living in a jar: genetic variation and differentiation among laboratory strains of the red flour beetle

The red flour beetle, Tribolium castaneum, is a common pest, which has become an important model study organism, especially in genetic, ecological and evolutionary research. Although almost all studies on this species have been conducted using established laboratory strains, very little is known about the loss of genetic diversity within the strains and genetic divergence between different laboratory stocks. In this study, five long‐term laboratory strains and one wild strain were examined for genetic variation at 12 microsatellite loci, which were designed using publicly available sequences. One of the laboratory strains is resistant to phosphine and one to organophosphorous insecticides. All strains had significant amounts of molecular variation, but genetic diversity in the laboratory strains was lower than in the wild‐derived strain used as control. We observed significant molecular divergence among the strains, however, the relationship between them reflected resistance status rather than geographic origins. We found no evidence for recent bottlenecks, but the wild‐derived population showed signs of demographic expansion. A novel multivariate method, multiple co‐inertia analysis, revealed that the two loci contributing most to the divergence between the resistant strains were located on the eighth chromosome, near genes associated with insecticide resistance.     

Age profile of immunity to influenza: effect of original antigenic sin

When multiple infections are possible during an individual’s lifetime, as with influenza, a host’s history of infection and immunity will determine the result of future exposures. In turn, the suite of varying individual infection histories will shape the population level dynamics of the disease. Exploring the consequences of precisely how immunity is acquired using mathematical models has proven challenging though: if n strains have circulated previously, there are 2ⁿ combinations of past infection to consider. However, by using an age-structured mathematical model of a disease with multiple strains, we can examine the population immune profile without explicitly keeping track of all possible infection histories. This framework allows previously unknown consequences of assumptions about immune acquisition to be observed. In particular, we see that ‘original antigenic sin’ can reduce immunity in some age groups: these immune blind spots could be responsible for the unexpectedly high severity of certain past influenza epidemics.     

Reproductive and developmental costs of deltamethrin resistance in the Chagas disease vector Triatoma infestans

Effective chemical control relies on reducing vector population size. However, insecticide selection pressure is often associated with the development of resistant populations that reduce control success. In treated areas, these resistant individuals present an adaptive advantage due to enhanced survival. Resistance can also lead to negative effects when the insecticide pressure ceases. In this study, the biological effects of deltamethrin resistance were assessed in the Chagas disease vector Triatoma infestans. The length of each developmental stage and complete life cycle, mating rate, and fecundity were evaluated. Susceptible and resistant insects presented similar mating rates. A reproductive cost of resistance was expressed as a lower fecundity in the resistant colony. Developmental costs in the resistant colony were in the form of a shortening of the second and third nymph stage duration and an extension of the fifth stage. A maternal effect of deltamethrin resistance is suggested as these effects were identified in resistant females and their progeny independently of the mated male's deltamethrin response. Our results suggest the presence of pleiotropic effects of deltamethrin resistance. Possible associations of these characters to other traits such as developmental delays and behavioral resistance are discussed.     

Life history changes in Trogoderma variabile and T. inclusum due to mating delay with implications for mating disruption as a management tactic

Controlling postharvest pest species is a costly process with insecticide resistance and species‐specific control requiring multiple tactics. Mating disruption (MD) can be used to both decrease a female's access to males and delay timing of mating and decreases overall mating success in a population and population growth rate. Development of new commercially available MD products requires an understanding of life history parameters associated with mating delay. These can provide information for targeting proportions of reproducing individuals using MD. After delaying mating for females of two closely related beetle species, Trogoderma variabile and T. inclusum, we surveyed survivorship, number of eggs laid, and number of progeny emerged. With increases in mating age, total number of eggs laid and total number of progeny emerged significantly declined over time. T. inclusum typically had greater numbers of eggs laid and progeny emerged compared to T. variabile as female age at mating increased, suggesting that T. inclusum may be more resistant to long‐term delays in mating. Life span showed an increase as mating age increased but life span significantly decreased almost immediately following mating. Simulations depicting multiple distributions of mating within a population suggest that in a closed population, high levels of mating delay significantly reduced reproductive growth rates. Although reproductive growth rates were decreased with increased mating age, they are still large enough to maintain populations. This study highlights the differences in life history between two closely related species, suggesting that T. inclusum outperforms T. variabile over the course of a life span, but T. variabile has better reproductive capabilities early in life. MD may also be a viable component of a pest management system for these two species as it significantly decreased overall reproductive output and population growth.     

白纹伊蚊抗高效氯氰菊酯和抗敌百虫品系的生物学特性及种群参数

白纹伊蚊Aedes albopictus Skuse抗高效氯氰菊酯和抗敌百虫品系的某些种群参数及生物学特性与敏感品系的比较有显著差异,两个抗药性品系之间差异也较明显。抗高效氯氰菊酯品系(Rc)的繁殖力强、平均世代历期短,雌性个体比率高。抗敌百虫品系(Rt)有适合度缺陷、平均世代历期长,雌性个体比率低。Rc和Rt的孵化率均低于敏感品系。成虫死亡率由高到低依次为Rt、Rc、S。综合分析得知,高效氯氰菊酯刺激白纹伊蚊生殖、种群增长快。抗敌百虫白纹伊蚊明显地表现出生殖不利性,种群加倍较慢。     

Sexual recombination punctuated by outbreaks and clonal expansions predicts Toxoplasma gondii population genetics

The cosmopolitan parasitic pathogen Toxoplasma gondii is capable of infecting essentially any warm-blooded vertebrate worldwide, including most birds and mammals, and establishes chronic infections in one-third of the globe’s human population. The success of this highly prevalent zoonosis is largely the result of its ability to propagate both sexually and clonally. Frequent genetic exchanges via sexual recombination among extant parasite lineages that mix in the definitive felid host produces new lines that emerge to expand the parasite’s host range and cause outbreaks. Highly successful lines spread clonally via carnivorism and in some cases sweep to pandemic levels. The extent to which sexual reproduction versus clonal expansion shapes Toxoplasma’s current, global population genetic structure is the central question this review will attempt to answer.     

Biological control in a disturbed environment

Most ecological and epidemiological models describe systems with continuous uninterrupted interactions between populations. Many systems, though, have ecological disturbances, such as those associated with planting and harvesting of a seasonal crop. In this paper, we introduce host–parasite–hyperparasite systems as models of biological control in a disturbed environment, where the host–parasite interactions are discontinuous. One model is a parasite–hyperparasite system designed to capture the essence of biological control and the other is a host–parasite–hyperparasite system that incorporates many more features of the population dynamics. Two types of discontinuity are included in the models. One corresponds to a pulse of new parasites at harvest and the other reflects the discontinuous presence of the host due to planting and harvesting. Such discontinuities are characteristic of many ecosystems involving parasitism or other interactions with an annual host. The models are tested against data from an experiment investigating the persistent biological control of the fungal plant parasite of lettuce Sclerotinia minor by the fungal hyperparasite Sporidesmium sclerotivorum, over successive crops. Using a combination of mathematical analysis, model fitting and parameter estimation, the factors that contribute the observed persistence of the parasite are examined. Analytical results show that repeated planting and harvesting of the host allows the parasite to persist by maintaining a quantity of host tissue in the system on which the parasite can reproduce. When the host dynamics are not included explicitly in the model, we demonstrate that homogeneous mixing fails to predict the persistence of the parasite population, while incorporating spatial heterogeneity by allowing for heterogeneous mixing prevents fade-out. Including the host''s dynamics lessens the effect of heterogeneous mixing on persistence, though the predicted values for the parasite population are closer to the observed values. An alternative hypothesis for persistence involving a stepped change in rates of infection is also tested and model fitting is used to show that changes in some environmental conditions may contribute to parasite persistence. The importance of disturbances and periodic forcing in models for interacting populations is discussed.     

Hepatopancreas alteration of the blue crab Callinectes sapidus by the rhizocephalan barnacle Loxothylacus texanus

A histological study of the hepatopancreas of the blue crab Callinectes sapidus parasitized by the rhizocephalan barnacle Loxothylacus texanus was conducted to explore if the degree of development of the parasite’s rootlet system was correlated to its maturation process as seen by external characters of its reproductive body or externa. Four types of crabs were examined: control, with virgin and mature externa, and scarred. A clear progression with an increase in number and size of the parasite’s rootlets in the hosts’ hepatopancreas can be seen. Although the hepatopancreatic tubules remain functional, the hepatopancreas appears as a loose structure, completely infiltrated with L. texanus rootlets, in advanced stages of the parasitism.     

On the meaning of the distance-to-target weighting method and normalisation in Life Cycle Impact assessment

Distance-to-target weighting methods are widely used in life cycle impact assessment. The methods rank impacts as being more important the further away society’s activities are from achieving the desired targets for the pollutants. However, we feel that the scientific bases of the distance-to-target methods still need more clarification. This article illustrates how multiattribute value theory (MAVT) can be applied to interpret the impact category weights as well as the aggregation rule and normalisation used in the distant-to-target methods. Our comparison revealed that under certain conditions two of the three commonly used impact assessment methods (Ecoindicator 95, ET-method) applying distance-to-target weighting are consistent with the impact assessment framework derived from MAVT. This consistency holds for non-zero targets with equal importance and linear damage functions passing through the origin. We show that the MAVT framework offers a foundation for the methodological development in life cycle impact assessment.     

Phylogeographic Triangulation: Using Predator-Prey-Parasite Interactions to Infer Population History from Partial Genetic Information

Phylogeographic studies, which infer population history and dispersal movements from intra-specific spatial genetic variation, require expensive and time-consuming analyses that are not always feasible, especially in the case of rare or endangered species. On the other hand, comparative phylogeography of species involved in close biotic interactions may show congruent patterns depending on the specificity of the relationship. Consequently, the phylogeography of a parasite that needs two hosts to complete its life cycle should reflect population history traits of both hosts. Population movements evidenced by the parasite’s phylogeography that are not reflected in the phylogeography of one of these hosts may thus be attributed to the other host. Using the wild rabbit (Oryctolagus cuniculus) and a parasitic tapeworm (Taenia pisiformis) as an example, we propose comparing the phylogeography of easily available organisms such as game species and their specific heteroxenous parasites to infer population movements of definitive host/predator species, independently of performing genetic analyses on the latter. This may be an interesting approach for indirectly studying the history of species whose phylogeography is difficult to analyse directly.     

Phenotypic characterization of Leishmania mexicana pentamidine-resistant promastigotes. Modulation of the resistance during in-vitro developmental life cycle

Two clones of Leishmania mexicana resistant to 5 μM (LmR5CL2) and 20 μ M (LmR20CLl) pentamidine, derived from a parental wild-type clone (LmWTCL3) were selected in vitro using a continuons drug pressure protocol. Both resistant clones expressed a cross-resistance to diminazene aceturate. No differences in their in-vitro infectivity for mouse peritoneal macrophages between wild-type and pentamidine-resistant promastigotes were observed. During these experiments, promastigotes of LmR20CL1 derived from intramacrophagic amastigote forms reverted to the pentamidine-sensitive phenotype, unlike the lower resistant ones. In the same way, when a complete developmental sequence of L. mexicana was achieved in axenic cultures, LmR20CL1 promastigotes derived from axenically growing amastigotes expressed an IC₅₀ value close to the wild-type one, whereas resulting LmR5CL2 promastigotes remained pentamidine resistant. This modulation of the chemoresistance during the developmental life cycle could be significant in the transmission of drug-resistant strains by Phlebotominae as well as in basic research to follow drug resistance during the in-vitro and in-vivo life cycle of Leishmania.     

Population Genetics and Reproductive Strategies of African Trypanosomes: Revisiting Available Published Data

Trypanosomatidae are a dangerous family of Euglenobionta parasites that threaten the health and economy of millions of people around the world. More precisely describing the population biology and reproductive mode of such pests is not only a matter of pure science, but can also be useful for understanding parasite adaptation, as well as how parasitism, specialization (parasite specificity), and complex life cycles evolve over time. Studying this parasite’s reproductive strategies and population structure can also contribute key information to the understanding of the epidemiology of associated diseases; it can also provide clues for elaborating control programs and predicting the probability of success for control campaigns (such as vaccines and drug therapies), along with emergence or re-emergence risks. Population genetics tools, if appropriately used, can provide precise and useful information in these investigations. In this paper, we revisit recent data collected during population genetics surveys of different Trypanosoma species in sub-Saharan Africa. Reproductive modes and population structure depend not only on the taxon but also on the geographical location and data quality (absence or presence of DNA amplification failures). We conclude on issues regarding future directions of research, in particular vis-à-vis genotyping and sampling strategies, which are still relevant yet, too often, neglected issues.     

Why are viral genomes so fragile? The bottleneck hypothesis

If they undergo new mutations at each replication cycle, why are RNA viral genomes so fragile, with most mutations being either strongly deleterious or lethal? Here we provide theoretical and numerical evidence for the hypothesis that genetic fragility is partly an evolutionary response to the multiple population bottlenecks experienced by viral populations at various stages of their life cycles. Modelling within-host viral populations as multi-type branching processes, we show that mutational fragility lowers the rate at which Muller’s ratchet clicks and increases the survival probability through multiple bottlenecks. In the context of a susceptible-exposed-infectious-recovered epidemiological model, we find that the attack rate of fragile viral strains can exceed that of more robust strains, particularly at low infectivities and high mutation rates. Our findings highlight the importance of demographic events such as transmission bottlenecks in shaping the genetic architecture of viral pathogens.