The effects of spatial habitat structure on population variability of freshwater snails

Experiments were conducted to examine the effects of a habitat's spatial structure on population variability in two species of freshwater snails (Physa acuta and Austropeplea ollula). To alter the spatial structure of the habitat, vinyl chloride plates were hung in experimental tanks, providing three types of spatial structure: Complex structure, Simple structure and Control (no structure). In Experiment 1, the average number of individuals in a tank did not differ among the three types of structure 2 months after the introduction of the snails, but the variability of the number of individuals in the Complex structure tanks was lowest, whereas the variability in the Control tanks was highest. In Experiment 2, in addition to the spatial structure of the habitat, three types of species interaction were designed as experimental treatments: only P. acuta was introduced into the tanks (P. acuta tanks), only A. ollula was introduced into the tanks (A. ollulatanks) and both P. acuta and A. ollula were introduced into the tanks (two-species tanks). For the P. acuta tanks, the variability of the number of P. acuta individuals in the Complex structure tanks was lowest, and the variability in the Control tanks was highest when the effect of the number of individuals in a tank was subtracted. For the A. ollula tanks and the two-species tanks, there were no significant differences in the variability of the population size among the different treatments of spatial structure. The spatial distribution of P. acuta was more uniform than the distribution of A. ollula on the plates of complex structure. Our results indicate that the spatial structure of the habitat influences the variability of population size (the variance of the number of individuals in different populations during the earlier period after the introduction of the snails), but the effects depend on the spatial behavior of individuals and the interaction with other species.     

Genetic variability in two hydrophilous species ofPotamogeton,P. pectinatus andP. filiformis (Potamogetonaceae)

Genetic variability inPotamogeton pectinatus andP. filiformis was studied by means of isozymes. The overall levels of variability were similar to some other well studied hydrophilous species, and were shown to be distributed more between than within populations. This partitioning of variability was attributed to three main factors. (1) Clonal growth (as measured by the frequency of multi-enzyme phenotypes) was shown to be a major factor in both species, although more important inP. pectinatus. (2) Low levels of sexual reproduction were shown to be a likely contributor to the partitioning of variability inP. pectinatus; such reproduction is probably limited by seedling recruitment rather than by infrequent flowering. (3) Geographical isolation was indicated as a factor regulating gene flow at distances of more than about 1000 km in both species, with the data suggesting that dispersal between populations is mainly by seed rather than by vegetative means.     

High-resolution spatio-temporal distribution of a coastal phytoplankton bloom using laser in situ scattering and transmissometry (LISST)

Development of optical observation technologies provides new insights into harmful algal bloom (HAB) detection and assessment of HAB species dynamics. Based on preliminary laboratory tests, a laser in situ scattering and transmissometry instrument (LISST-100X) was used to monitor a high-biomass phytoplankton proliferation in the field. Short-term spatial and temporal changes in particle size distribution were measured during a recurrent Alexandrium taylori outbreak. Since the bloom was not monospecific, a size-fraction method to discriminate particular species from LISST-100X measurements was proposed. The results were validated to simultaneous microscopic counts of phytoplankton, and the significantly positive correlation obtained between the two methodologies confirmed the instrument's ability to discriminate phytoplankton at the group and species level. The LISST-100X obtains high-resolution in situ data, and is therefore a better alternative than the traditional microscope for assessing temporal and spatial evolution of HABs. Field observations showed high variability over a short time scale associated with diel vertical migration of A. taylori and the whole phytoplankton population (nanoplankton and microplankton). A numerical circulation model was used to investigate the influence of beach hydrodynamics in the observed horizontal variability. Simulations of the model suggested an important role of daily coastal circulation in determining the distribution of A. taylori in coastal environments.     

Implications of temporal and spatial variability in Paracentrotus lividus populations to the associated commercial coastal fishery

Analysis of population structure and behaviour of a semi-enclosed and theoretically non-fished population of the echinoid Paracentrotus lividus at Lough Hyne marine nature reserve, Co. Cork, Ireland, showed distinct variability. Aspects of the behavioural variability in this species have significant consequences for the natural fishery harvest potential of this species. Whether or not, when and where individuals migrate to the upper surfaces of rocks varies on a local and regional scale as well as seasonally. The effect of this is apparent changes in (a) the population structure, (b) the population size and (c) the population centres of abundance. The population structure and size of the Lough Hyne population has changed substantially, as have those on a larger spatial scale, although the causative agents are debatable. Such changes are the result of large-scale mortality of adults and failure of cohort recruitment. Despite the undeniable pressures of overfishing at many localities, it seems likely there is a strong `natural' and possibly predictable element to the variability in P. lividus population size and structure. For the restoration and sustainable harvest of Irish P. lividus aspects of its behavioural ecology need to be taken more closely into consideration.     

广东省中山市五桂山土沉香空间遗传结构

为了解五桂山的土沉香(Aquilaria sinensis)种群空间遗传结构,利用18个微卫星位点对143株胸高直径大于5 cm的土沉香个体基因型进行了检测。结果表明,五桂山土沉香种群的观测杂合度和期望杂合度均为0.534;近交系数为0.000 1,说明五桂山土沉香遗传多样性并不低,且种群处于随机交配状况。空间遗传结构分析结果表明,五桂山土沉香缺乏空间遗传结构,不同遗传背景的个体相互混杂,导致相邻个体遗传差异较大。这可能是五桂山土沉香种群发育过程中自疏所致,也可能是这一地区土沉香为人工种植,而非自然发育形成而造成的。     

Silene rothmaleri P. Silva (Caryophyllaceae), a rare, fragmented but genetically diverse species

Silene rothmaleri is an endemic Portuguese species considered extinct until 1992, when it was rediscovered in the wild with a highly fragmented distribution. These rare plants occur along the southwestern Portuguese coast in small populations, which in addition to phenological differences that occur along the north–south gradient could create a pattern of genetic isolation. To evaluate the degree of genetic diversity and estimate the relationship between population fragmentation and genetic variability, we analysed the five known populations of S. rothmaleri using random amplified polymorphic DNA. Degree of polymorphism and Shannon Index of phenotypic diversity revealed high levels of diversity, found mainly within populations. PCo and cluster analysis revealed a distinct north–south cline, which was confirmed by spatial autocorrelation (Mantel) analysis. This indicates the existence of gene flow between small nearby populations and its insufficiency between widely separated populations. Levels of gene flow (Nm) estimated from the Shannon Index reveal a pattern consistent with a larger past distribution that went through a period of contraction and lack of gene flow followed by population differentiation. The central and largest population probably acts as a core of genetic variability inherited as a relict from a larger and more diverse ancestral population.     

Changes in the structure and heterogeneity of vegetation and microsite environments with the chronosequence of primary succession on a glacier foreland in Ellesmere Island, high arctic Canada

Primary plant succession was investigated on a well-vegetated glacier foreland on Ellesmere Island in high arctic Canada. A field survey was carried out on four glacier moraines differing in time after deglaciation to assess vegetation development and microsite modification in the chronosequence of succession. The results showed evidence of directional succession without species replacement, which is atypical in the high arctic, reflecting the exceptionally long time vegetation development. During this successional process, Salix arctica dominated throughout all moraines. The population structures of S. arctica on these moraines implied the population growth of this species with progressing succession. The population density of S. arctica reflected the abundance of vascular plants, suggesting that development of the plant community might be related to structural changes and the growth of constituting populations. Through such growths of the population and the whole community with progressing succession, the spatial heterogeneity of vegetation gradually declines. Moreover, this vegetation homogenization is accompanied by changes in the spatial heterogeneity of microsite environments, suggesting significant plant effects on the modification of microsite environments. Accordingly, it was concluded that the directional primary succession observed on this glacier foreland is characterized by the initial sporadic colonization of plants, subsequent population growths, and the community assembly of vascular plants, accompanied by microsite modification.     

How accurate are single site transect data for monitoring butterfly trends? Spatial and temporal issues identified in monitoring Lasiommata megera

Multiple transect counts following Butterfly Monitoring Scheme (UKBMS) guidelines and Jolly–Seber estimates of population size were used to monitor the abundance of second generation Lasiommata megera on a single site in southern England. The two methods resulted in different patterns of emergence being detected. The proportion of the population (estimated by Jolly–Seber) recorded with transect counts depended on the time of day and weather with afternoon transect counts best recording the trend in abundance over the flight period, but even then counts recorded a variable fraction of the population (6.2–51.3%). Increasing the frequency with which transect counts are carried out per week reduced variation and increased the fit of transect counts to Jolly–Seber generated population estimates. However, indices of abundance generated from randomly selected transect counts for L. megera within sampling weeks varied 4-fold and indices for other butterfly species were also highly variable. For L. megera, transect count variability is attributed to non-representative placement of the transect route and changes in the behaviour and spatial distribution in relation to population size and season. We suggest that transect counts need to be fully validated before the data are used to monitor changes of butterfly populations at individual sites.     

Do distances among host patches and host density affect the distribution of a specialist parasitoid?

The effect of spatial habitat structure and patchiness may differ among species within a multi-trophic system. Theoretical models predict that species at higher trophic levels are more negatively affected by fragmentation than are their hosts or preys. The absence or presence of the higher trophic level, in turn, can affect the population dynamics of lower levels and even the stability of the trophic system as a whole. The present study examines different effects of spatial habitat structure with two field experiments, using as model system the parasitoid Cotesia popularis which is a specialist larval parasitoid of the herbivore Tyria jacobaeae. One experiment examines the colonisation rate of the parasitoid and the percentage parasitism at distances occurring on a natural scale; the other experiment examines the dispersal rate and the percentage parasitism in relation to the density of the herbivore and its host plant. C. popularis was able to reach artificial host populations at distances up to the largest distance created (at least 80 m from the nearest source population). Also, the percentage parasitism did not differ among the distances. The density experiment showed that the total number of herbivores parasitised was higher in patches with a high density of hosts, regardless of the density of the host plant. The percentage parasitism, however, was not related to the density of the host. The density of the host plant did have a (marginally) significant effect on the percentage parasitism, probably indicating that the parasitoid uses the host plant of the herbivore as a cue to find the herbivore itself. In conclusion, the parasitoid was not affected by the spatial habitat structure on spatial scales that are typical of local patches.     

南京老山秤锤树空间分布格局及种间关联性

以南京老山1 hm 2样地秤锤树(Sinojackia xylocarpa)天然种群为研究对象,运用成对g(r)函数,选择完全随机模型、异质泊松模型与先决条件零模型,分析秤锤树种群结构和空间分布格局及其空间关联性,从空间格局角度来深入认识其种群结构和分布格局及形成该格局可能存在的机制并提出保护建议。结果表明:(1)秤锤树天然种群中小径个体数量占优,属于增长型种群。(2)种内空间分布研究中,基于完全随机模型分析,秤锤树种群在尺度0~26 m时为聚集分布,尺度29~30 m时为均匀分布;基于异质泊松模型分析,秤锤树种群在0~23 m时为聚集分布,尺度27~30 m时为均匀分布。秤锤树空间分布表现为由聚集分布向均匀分布变化。(3)主要种间关联性研究中,秤锤树与朴树(Celtis sinensis)的种间关联性表现为小尺度下负关联,随着空间尺度的增加变为正关联。秤锤树与黄连木(Pistacia chinensis)和秤锤树与三角槭(Acer buergerianum)的种间关联性大致相同,基本为大尺度下正关联,偶尔出现负关联和无关联。上述结果表明,秤锤树种群更新状况良好,种群空间分布以聚集分布为主,其主要受种间竞争、扩散限制与密度制约的影响。基于种群现状开展就地保护与适当干扰其生存群落,是濒危物种秤锤树的科学有效的保护措施。     

Structure of Flower in Arabidopsis thaliana: Spatial Pattern Formation

Morphological analysis of flowers was carried out in Arabidopsis thaliana wild type plants and agamous and apetala2 mutants. No direct substitution of organs takes place in the mutants, since the number and position of organs in them do not correspond to the structure of wild type flower. In order to explain these data, a notion of spatial pattern formation in the meristem was introduced, which preceded the processes of appearance of organ primordia and formation of organs. Zones of acropetal and basipetal spatial pattern formation in the flower of wild type plants were postulated. It was shown that the acropetal spatial pattern formation alone took place in agamous mutants and basipetal spatial pattern formation alone, in apetala2 mutants. Different variants of flower structure are interpreted as a result of changes in the volume of meristem (space) and order of spatial pattern formation (time).     

Genetic variability of Bouteloua gracilis populations differing in forage production at the southernmost part of the North American Graminetum

Bouteloua gracilis (blue grama grass) native populations have been shown to be highly variable, however the genetic basis of this variability has not been well established. Determining the extent of genetic variability within and among plant populations have important repercussions for the management and conservation of species, and in particular for those subjected to intensive use such as forage plants. Using RAPD, this study was undertaken to investigate the genetic variability of four B. gracilis native populations developed in three grasslands and one shrubland at the southernmost part of the North American Graminetum in México. Significant differences in grass aboveground production were found among the study sites, while considerable genetic variation within each of the four blue grama populations evaluated was detected. The molecular analysis, based on 55 individuals, revealed a total of 108 scorable repeatable bands, with 99 of them being polymorphic (overall polymorphism= 91.7%). Within every population each individual was genetically distinct and no population-specific bands (fixed marker differences) were identified. Pair-wise Φ _ST comparisons indicated that the four blue grama populations examined were significantly different in their genetic constitution (P<0.001). AMOVA revealed that most of the genetic variation detected in Bouteloua gracilis was explained by intra- (88.53%), rather than by inter-population (11.47%) differences. UPGMA based on the Φ _ST values indicated that the blue grama population collected from the shrubland displayed the RAPD profiles that most differed among the study sites. Possible causes of these results could reside on intensive grazing reducing, and proper management conserving, the forage production and genetic diversity of blue grama native populations. Our results are consistent with previous studies analyzing population genetic variation in outcrossing grasses and, in particular, with ecological and cytological evidence for a high genetic variability in native populations of B. gracilis. The implications of our findings and prospective studies to be undertaken using molecular tools in the study of blue grama biology and ecology are discussed. This revised version was published online in August 2006 with corrections to the Cover Date.     

Microsatellite variation reveals weak genetic structure and retention of genetic variability in threatened Chinook salmon (<Emphasis Type="Italic">Oncorhynchus tshawytscha</Emphasis>) within a Snake River watershed

Pacific salmon (Oncorhynchus spp.) have been central to the development of management concepts associated with evolutionarily significant units (ESUs), yet there are still relatively few studies of genetic diversity within threatened and endangered ESUs for salmon or other species. We analyzed genetic variation at 10 microsatellite loci to evaluate spatial population structure and genetic variability in indigenous Chinook salmon (Oncorhynchus tshawytscha) across a large wilderness basin within a Snake River ESU. Despite dramatic 20th century declines in abundance, these populations retained robust levels of genetic variability. No significant genetic bottlenecks were found, although the bottleneck metric (M ratio) was significantly correlated with average population size and variability. Weak but significant genetic structure existed among tributaries despite evidence of high levels of gene flow, with the strongest genetic differentiation mirroring the physical segregation of fish from two sub-basins. Despite the more recent colonization of one sub-basin and differences between sub-basins in the natural level of fragmentation, gene diversity and genetic differentiation were similar between sub-basins. Various factors, such as the (unknown) genetic contribution of precocial males, genetic compensation, lack of hatchery influence, and high levels of current gene flow may have contributed to the persistence of genetic variability in this system in spite of historical declines. This unique study of indigenous Chinook salmon underscores the importance of maintaining natural populations in interconnected and complex habitats to minimize losses of genetic diversity within ESUs.     

THE INFLUENCE OF SELF-FERTILIZATION AND POPULATION DYNAMICS ON THE GENETIC STRUCTURE OF SUBDIVIDED POPULATIONS: A CASE STUDY USING MICROSATELLITE MARKERS IN THE FRESHWATER SNAIL BULINUS TRUNCATUS

The distribution of neutral genetic variability within and among sets of populations results from the combined actions of genetic drift, migration, extinction and recolonization processes, mutation, and the mating system. We here analyzed these factors in 38 populations of the hermaphroditic snail Bulinus truncatus. The sampling area covered a large part of the species range. The variability was analyzed using four polymorphic microsatellite loci. A very large number of alleles (up to 55) was found at the level of the whole study. Observed heterozygote deficiencies within populations are consistent with very high selfing rates, generally above 0.80, in all populations. These should depress the variability within populations, because of low effective size, genetic hitchhiking, and background selection, whatever the model of mutation assumed. However, that some populations exhibit much more variability than others suggests that historical demographic processes (e.g., population size variation, bottlenecks, or founding events) may play a significant role. A hierarchical analysis of the distribution of the variability across populations indicates a strong pattern of isolation by distance, whatever the geographical scale considered. Our analysis also illustrates how the mutation rate may affect population differentiation, as different mutation rates result in different levels of homoplasy at microsatellite loci. The effects of both genetic drift and gene flow vary with the temporal and spatial scales considered in B. truncatus populations.     

Variable demography in relation to germination time in the annual plant Tagetes micrantha Cav. (Asteraceae)

This study tests whether variability in a life history trait such as emergence time has ecological and evolutionary significance in seasonal environments due to their relationship with fitness components. The population dynamics of nine different cohorts of seedlings emergence were analyzed in a natural population of the annual herb Tagetes micrantha Cav. (Asteraceae). Temporal variation in seedling emergence was related to the pattern of precipitation, while spatial variation could be related to topographical heterogeneity. Plants that emerged at the beginning of the season (early germination) had lower probabilities of survivorship than those that emerged at the end of the season (late germination). In contrast, plants that emerged early had, on average, higher fecundity than those that emerged late. The net result of these contrasting patterns of survival and fecundity constitute a life history trade-off in T. micrantha.     

Sperm-dependent parthenogens delay the spatial expansion of their sexual hosts

It has been known for long time that asexual organisms may affect the distribution of sexual taxa. In fact, such phenomenon is inherent in the concept of geographical parthenogenesis. On the other hand, it was generally hypothesized that sperm-dependent asexuals may not exercise the same effect on related sexual population, due to their dependence upon them as sperm-donors. Recently, however, it became clear that sperm-dependent asexuals may directly or indirectly affect the distribution of their sperm-hosts, but rather in a small scale. No study addressed the large-scale biogeographic effect of the coexistence of such asexuals with the sexual species. In our study we were interested in the effect of sexual–asexual coexistence on the speed of spatial expansion of the whole complex. We expand previously published Lotka–Volterra model of the coexistence of sexual and gynogenetic forms of spined loach (Cobitis; Teleostei) hybrid complex by diffusion. We show that presence of sperm-dependent parthenogens is likely to negatively affect the spatial expansion of sexuals, and hence the whole complex, compared to pure sexual population. Given that most of the known sperm-dependent asexual complexes are distributed in areas prone to climate-induced colonization/extinction events, we conclude that such mechanism may be an important agent in determining the biogeography of sexual taxa and therefore requires further attention including empirical tests.     

祁连山北坡青海云杉林下苔藓层对土壤水分空间差异的影响

苔藓层是青海云杉林(Picea crassifolia forest)下的一个重要层片,它通过截持降水和减少土壤蒸发,对土壤水分产生影响。以祁连山北坡排露沟小流域的一个阴坡(海拔2700 m,植被为青海云杉林)作为样坡,于2010—2012年生长季对青海云杉林下有、无苔藓层覆盖地点的土壤水分进行对比观测。结果表明在祁连山青海云杉林下,苔藓层覆盖能减少土壤水分的空间差异。主要表现为:(1)无苔藓覆盖各观测点土壤含水量极差达62.2 mm,空间变异系数(CV)为17.3%;有苔藓层覆盖观测点土壤含水量空间变异系数为2.3%,仅为无苔藓覆盖地点的1/7.5,空间差异极显著(sig.0.001)。(2)在持续无雨、小雨后和连阴雨天气下,有苔藓覆盖地点土壤含水量空间差异均显著小于无苔藓覆盖地点(sig.0.05)。在持续无雨的情况下,无苔藓层覆盖各观测点土壤含水量空间变异系数平均值为19.8%,有苔藓覆盖地点土壤含水量空间变异系数平均值为6.6%,仅为无苔藓覆盖地点的1/3。小雨后,无苔藓覆盖各观测点土壤含水量空间变异系数平均值为15.2%,有苔藓覆盖地点土壤水分空间变异系数平均为5.1%,为无苔藓覆盖地点的1/3。连阴雨后,无苔藓覆盖各观测点土壤含水量空间变异系数平均为15.4%,有苔藓覆盖地点土壤水分空间变异系数平均为4.6%,为无苔藓覆盖地点的1/3.3。(3)持续无雨的情况下,苔藓层减小土壤水分空间差异的作用主要反映在土壤表层0—15 cm,对深层的作用不显著。而小雨和连阴雨后,苔藓层对15—80 cm深层土壤影响显著,而表层0—15 cm没有明显规律。     

Temporal and spatial variability in soil nutrient status of a former beach plain

As part of a research project on the variation in life-history characteristics within a population of Plantago major L. ssp. pleiosperma, seasonal and spatial variability in the availability of macronutrients (N, P, and K) were examined on a small scale in the 0–25 cm soil depth at a primary beach plain site, embanked since 1966. On the basis of distinct differences, among other things, in plant biomass, an a priori division into three different types of microhabitat occurring in a mosaic distribution pattern was made: an overall low-lying area (subsite 1) with slightly elevated patches of 0.5 to 1.5 m in diameter (subsite 2) and rather large patches, 20 to 40 m in diameter, of sea buckthorn shrubs, with small and relatively open spots (subsite 3) in the transitional zone from lower area into scrub. All three subsite types were studied within a total area of approximately 2000 m². Three methods of analysis were applied: an inventory survey (sampling once at the start of the growing season), an analysis of the seasonal variation (sampling at approximately monthly intervals during the period April-November), and an assessment of nitrogen mineralization potentials in the laboratory (sampling once at the beginning of the growing season). All three procedures clearly demonstrated the occurrence of differences in the availability of nutrients over very short distances, i.e. a pronounced spatial variability among subsites. Particularly the availability of N and P appeared to have increased at the subsites 2 and 3, when compared to subsite 1. This small-scale differentiation in soil properties has occurred in an essentially homogeneous parent material (e.g. in texture and carbonate content) over a period of about 20 years. Besides a spatial variability, statistically significant temporal fluctuations were observed in the availability of N, P, and K. Relative fluctuations of mineral N (as indicated by the range/mean ratio) were especially large at the subsites 2 and 3.     

Poa annua L. in Antarctic: searching for the source of introduction

The level of polymorphism, genetic variability and relatedness of a population of Poa annua L. from South Shetlands Islands was studied and compared with results obtained for populations from two potential sources of introduction (Argentina—Ushuaia and Poland—Dziekanów Leśny) using the amplified fragment length polymorphism (AFLP) approach. Five primer pairs used for AFLP profiling amplified 226 scoreable DNA fragments that were used for Clustral and Factorial analyses. The level of molecular variability among all individuals from all the analysed populations reaches 30%. Clustral and Factorial analyses show that all populations formed clear-cut uniform groups according to their locations. However, population from King George Island show high variability. High genetic diversity may be related with escalated human activity at the area of Arctowski Station, favouring introductions of P. annua from many different sources and by many different vectors.