Environmental correlates of the Late Quaternary regional extinctions of large and small Palaearctic mammals

Most studies of mammal extinctions during the Pleistocene–Holocene transition explore the relative effects of climate change vs human impacts on these extinctions, but the relative importance of the different environmental factors involved remains poorly understood. Moreover, these studies are strongly biased towards megafauna, which may have been more influenced by human hunting than species of small body size. We examined the potential environmental causes of Pleistocene–Holocene mammal extinctions by linking regional environmental characteristics with the regional extinction rates of large and small mammals in 14 Palaearctic regions. We found that regional extinction rates were larger for megafauna, but extinction patterns across regions were similar for both size groups, emphasizing the importance of environmental change as an extinction factor as opposed to hunting. Still, the bias towards megafauna extinctions was larger in southern Europe and smaller in central Eurasia. The loss of suitable habitats, low macroclimatic heterogeneity within regions and an increase in precipitation were identified as the strongest predictors of regional extinction rates. Suitable habitats for many species of the Last Glacial fauna were grassland and desert, but not tundra or forest. The low‐extinction regions identified in central Eurasia are characterized by the continuous presence of grasslands and deserts until the present. In contrast, forest expansion associated with an increase in precipitation and temperature was likely the main factor causing habitat loss in the high‐extinction regions. The shift of grassland into tundra also contributed to the loss of suitable habitats in northern Eurasia. Habitat loss was more strongly related to the extinctions of megafauna than of small mammals. Ungulate species with low tolerance to deep snow were more likely to go regionally extinct. Thus, the increase in precipitation at the Pleistocene–Holocene transition may have also directly contributed to the extinctions by creating deep snow cover which decreases forage availability in winter.     

The dynamics of bioresources and activity of the paleolithic man, using the example of northwestern Altai Mountains

Long-term studies of living and fossil mammals of the Altai Mountains (= Gornyi Altai) revealed the pattern of the dynamics of small mammal communities in this region in the second half of the Pleistocene, in the Holocene, and the present time. The fossil fauna of the Anui River valley differs significantly from the modern one. The Pleistocene fauna of Paleolithic sites reflects a considerably more diverse biotopic situation and high landscape diversity compared with the present time. This diversity depended on a stronger role in the communities of steppe and highland elements. The influence of Paleolithic man on Late Pleistocene populations of ungulates and large predators is detected.     

Late quaternary turnover of mammals in Borneo: the zooarchaeological record

The Quaternary has been a period of repeated, oscillating patterns of climate change. Global fluctuations in sea level affected the island status of Borneo, which was probably joined to continental Asia for more than half of the last 250,000 years. Alternating connection and isolation, coupled with the ecological barrier of a savanna corridor running from the Malay Peninsula to Java during periods of marine recession, are reflected in the present mammal fauna of Borneo. 38% of mammal species (excluding bats) are endemic, and some distinctive species or subspecies are confined to the north of the island. No known sites in Borneo match the Early and Middle Pleistocene regional sources in eastern Java. However, caves at Niah, Sireh and Jambusan, Sarawak, and Madai, Sabah, provide a zooarchaeological record covering the past 50,000 years. The Late Pleistocene mammals of Borneo included ten species also present among a Javan Middle Pleistocene savanna-adapted assemblage. Of these, four are categorised as ‘megafuana’: a giant pangolin, Javan rhinoceros, Malay tapir and tiger; the Sumatran rhinoceros can be added. In addition, there are less secure Pleistocene records of Asian elephant from Sarawak and Brunei. Holocene canid remains from Madai could either be the dhole or an early domestic dog. Palynological data combined with the mammal fauna confirm that around 45,000 years ago the vicinity of Niah was vegetated by closed forest. The continuous presence of a suite of arboreal specialists, including large primates, indicates that forest cover persisted through the terminal Pleistocene. Among local extinctions, the giant pangolin apparently disappeared early in this period, but tiger, Javan rhinoceros and tapir probably survived into the last millennium. Human predation of juveniles may account for the loss of the large ungulates, but the disappearance of tiger needs another explanation. Despite hunting pressure throughout the terminal Pleistocene and Holocene, a population of orangutan survived at Niah until perhaps the last millennium. Size diminution observed among large, medium and small mammal species is interpreted as the selective impact of environmental change. Once more is known about their ecology, changes in the bat fauna of Niah cave may provide indicators of environmental impacts affecting the wider mammal community during the later Holocene. In conclusion, it is recommended that the three nations, Brunei Darussalam, Malaysia and Indonesia, should support the WWF sponsored ‘Heart of Borneo’ as the most hopeful project to provide sustainable management of the rare and threatened forest-adapted wild mammals of the island.     

贵州毕节麻窝口洞与智人伴生的长鼻类化石

最近在贵州毕节麻窝口洞发现了3枚古人类牙齿化石和伴生的哺乳动物群。其中,古人类牙齿经初步研究可归入解剖学上的现代人,而与古人类相伴的大、小哺乳动物化石,经初步鉴定共计8目20科43属53种。本文系统记述了该动物群中大哺乳动物的典型代表——长鼻类化石,共2属2种:东方剑齿象(Stegodon orientalis)和亚洲象(Elephas maximus)。麻窝口洞的长鼻类缺失我国南方早更新世的典型种类——中华乳齿象(Sinomastodon)和华南剑齿象(Stegodon huananensis),具有从典型的中更新世大熊猫-剑齿象动物群(Ailuropoda-Stegodon fauna)向晚更新世亚洲象动物群(Asian elephant fauna)过渡的特征。依动物群的性质和地貌地层的特征,毕节麻窝口洞的智人及伴生动物群的地质时代很可能为中更新世晚期或晚更新世早期,这与堆积物的光释光年代测定的初步结果(距今约11.2-17.8万年)基本吻合。麻窝口洞东方剑齿象与亚洲象的组合明显具有东洋界亚热带动物群的特点,指示温暖潮湿的气候,这些长鼻类与智人等生存于近水的森林和灌丛中,并镶嵌了一些草地。     

Causes of Ecosystem Transformation at the End of the Pleistocene: Evidence from Mammal Body-Mass Distributions

Animal body sizes reflect the discontinuous architecture of the landscapes in which they live, and consequently their body-mass distributions are distinctly clumped rather than continuous. This architectural discontinuity is generated by ecological processes that discretely operate over micro-, meso-, and macroscales. Therefore, changes in these important scale-specific processes for a given geographical region over time should be reflected by corresponding changes in faunal body-mass clump patterns. In this study, we utilized this hypothesis to investigate the terminal Pleistocene mammal extinction event. Specifically, we analyzed the body-mass distributions of latest Pleistocene and modern mammal faunas from northern Florida and southern California to determine the nature of any changes in the clump structures of these regions during the Pleistocene–Holocene transition. In both regions, despite their wide geographical separation and faunal distinctiveness, body-mass clumps below the 40-kg level were remarkably stable across the Pleistocene–Holocene transition despite suffering extinctions. Larger clumps, in contrast, were either orderly truncated or completely eliminated rather than chaotically fragmented. Based on these findings, we argue that the terminal Pleistocene mammal extinctions were caused, at least in part, by changes in key mesoscale aspects of the landscape crucial to supporting a diversity of large mammals. Received 23 April 1997; accepted 14 October 1997.     

Ecological Changes in Coyotes (Canis latrans) in Response to the Ice Age Megafaunal Extinctions

Coyotes (Canis latrans) are an important species in human-inhabited areas. They control pests and are the apex predators in many ecosystems. Because of their importance it is imperative to understand how environmental change will affect this species. The end of the Pleistocene Ice Age brought with it many ecological changes for coyotes and here we statistically determine the changes that occurred in coyotes, when these changes occurred, and what the ecological consequences were of these changes. We examined the mandibles of three coyote populations: Pleistocene Rancho La Brean (13–29 Ka), earliest Holocene Rancho La Brean (8–10 Ka), and Recent from North America, using 2D geometric morphometrics to determine the morphological differences among them. Our results show that these three populations were morphologically distinct. The Pleistocene coyotes had an overall robust mandible with an increased shearing arcade and a decreased grinding arcade, adapted for carnivory and killing larger prey; whereas the modern populations show a gracile morphology with a tendency toward omnivory or grinding. The earliest Holocene populations are intermediate in morphology and smallest in size. These findings indicate that a niche shift occurred in coyotes at the Pleistocene/Holocene boundary – from a hunter of large prey to a small prey/more omnivorous animal. Species interactions between Canis were the most likely cause of this transition. This study shows that the Pleistocene extinction event affected species that did not go extinct as well as those that did.     

How Far into Europe Did Pikas (Lagomorpha: Ochotonidae) Go during the Pleistocene? New Evidence from Central Iberia

This paper reports the first find of pika remains in the Iberian Peninsula, at a site in central Spain. A fragmented mandible of Ochotona cf. pusilla was unearthed from Layer 3 (deposited some 63.4±5.5 ka ago as determined by thermoluminescence) of the Buena Pinta Cave. This record establishes new limits for the genus geographic distribution during the Pleistocene, shifting the previous edge of its known range southwest by some 500 km. It also supports the idea that, even though Europe’s alpine mountain ranges represented a barrier that prevented the dispersal into the south to this and other taxa of small mammals from central and eastern Europe, they were crossed or circumvented at the coldest time intervals of the end of the Middle Pleistocene and of the Late Pleistocene. During those periods both the reduction of the forest cover and the emersion of large areas of the continental shelf due to the drop of the sea level probably provided these species a way to surpass this barrier. The pika mandible was found accompanying the remains of other small mammals adapted to cold climates, indicating the presence of steppe environments in central Iberia during the Late Pleistocene.     

Late Quaternary loss of genetic diversity in muskox (<Emphasis Type="Italic">Ovibos</Emphasis>)

Background  

The modern wildherd of the tundra muskox (Ovibos moschatus) is native only to the New World (northern North America and Greenland), and its genetic diversity is notably low. However, like several other megafaunal mammals, muskoxen enjoyed a holarctic distribution during the late Pleistocene. To investigate whether collapse in range and loss of diversity might be correlated, we collected mitochondrial sequence data (hypervariable region and cytochrome b) from muskox fossil material recovered from localities in northeastern Asia and the Arctic Archipelago of northern North America, dating from late Pleistocene to late Holocene, and compared our results to existing databases for modern muskoxen.     

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

Grey wolves (Canis lupus) are one of the few large terrestrial carnivores that have maintained a wide geographical distribution across the Northern Hemisphere throughout the Pleistocene and Holocene. Recent genetic studies have suggested that, despite this continuous presence, major demographic changes occurred in wolf populations between the Late Pleistocene and early Holocene, and that extant wolves trace their ancestry to a single Late Pleistocene population. Both the geographical origin of this ancestral population and how it became widespread remain unknown. Here, we used a spatially and temporally explicit modelling framework to analyse a data set of 90 modern and 45 ancient mitochondrial wolf genomes from across the Northern Hemisphere, spanning the last 50,000 years. Our results suggest that contemporary wolf populations trace their ancestry to an expansion from Beringia at the end of the Last Glacial Maximum, and that this process was most likely driven by Late Pleistocene ecological fluctuations that occurred across the Northern Hemisphere. This study provides direct ancient genetic evidence that long‐range migration has played an important role in the population history of a large carnivore, and provides insight into how wolves survived the wave of megafaunal extinctions at the end of the last glaciation. Moreover, because Late Pleistocene grey wolves were the likely source from which all modern dogs trace their origins, the demographic history described in this study has fundamental implications for understanding the geographical origin of the dog.     

Les faunes terrestres quaternaires des Îles du Japon

This paper explains a brief history of research on Quaternary terrestrial mammals in Japan and fossil occurrence of taxa at major localities of each time period at first. Based on these data, then, the changing history of Quaternary terrestrial mammals in Japan is reviewed, especially on such points as (1) importance of strait in western Japan as coming over route, (2) changing history of Plio-Pleistocene terrestrial mammals in Japan, (3) two faunas during the Late Pleistocene, (4) dates of extinctions of large mammals near the end of the Late Pleistocene. Formation process of Quaternary terrestrial mammal fauna in Japan must have been affected by condition of land connection with Asian continent at seaway west to Japan and changing history of climate and vegetation in East Asia, and it should be considered by different time period, e.g. before and after ca. 1.7 Ma. The time period after 1.7 Ma is one affected by glacial sea level fluctuations. Although a new fauna came over from the west to Japan when sea level was low, this time period is basically the age of insularization, and it is presumed that the fauna was becoming endemic during this time period. During the late Late Pleistocene, there were two faunas existed in Japan, e.g. one with Palaeoloxodon naumanni having come over from the west and another with Mammuthus primigenius having come over from the north. The former dwelled mainly in deciduous broad-leaved forest and mixed forest with conifers in temperate climate, while the latter dwelled in steppe and coniferous forest in subboreal climate. Both faunas changed their ranges to north and south repeatedly as climate changed, and the extinction of large mammals of the fauna with Palaeoloxodon naumanni occurred at the same time of the beginning of the LGM (ca. 25–16 ka). On the other hand, large mammals of the fauna with Mammuthus primigenius became extinct or moved to north as climate became warm quickly after the LGM. Thus, it is suggested that the extinction of large mammals at the late Late Pleistocene occurred by “two pulses.” The extinction process of large mammals in Japan seems likely that they went extinct finally near the end of the Pleistocene going through the reduction of habitat and fragmentation of populations caused by the repeated temperature change during the late Late Pleistocene, rather than a single drastic event.     

Ancient DNA sequences point to a large loss of mitochondrial genetic diversity in the saiga antelope (Saiga tatarica) since the Pleistocene

Prior to the Holocene, the range of the saiga antelope (Saiga tatarica) spanned from France to the Northwest Territories of Canada. Although its distribution subsequently contracted to the steppes of Central Asia, historical records indicate that it remained extremely abundant until the end of the Soviet Union, after which its populations were reduced by over 95%. We have analysed the mitochondrial control region sequence variation of 27 ancient and 38 modern specimens, to assay how the species’ genetic diversity has changed since the Pleistocene. Phylogenetic analyses reveal the existence of two well‐supported, and clearly distinct, clades of saiga. The first, spanning a time range from >49 500 ¹⁴C ybp to the present, comprises all the modern specimens and ancient samples from the Northern Urals, Middle Urals and Northeast Yakutia. The second clade is exclusive to the Northern Urals and includes samples dating from between 40 400 to 10 250 ¹⁴C ybp. Current genetic diversity is much lower than that present during the Pleistocene, an observation that data modelling using serial coalescent indicates cannot be explained by genetic drift in a population of constant size. Approximate Bayesian Computation analyses show the observed data is more compatible with a drastic population size reduction (c. 66–77%) following either a demographic bottleneck in the course of the Holocene or late Pleistocene, or a geographic fragmentation (followed by local extinction of one subpopulation) at the Holocene/Pleistocene transition.     

Patterns of Formation of the Fauna of Fleas (Siphonaptera) Parasitizing Mammals in the Stavropol Upland and Adjacent Territories

According to the recent data, 55 species of fleas parasitizing 65 species of mammals were recorded in the Stavropol Upland (central Ciscaucasia, Russia). The fauna of the region comprises 87% of the total species composition of Ciscaucasian fleas. Most of these species are widely distributed on the Caucasian Isthmus and also in the Eastern Mediterranean. Of them, 14 species are polyzonal, 14 mostly occur in forest-steppes, 7 in foreststeppes and steppes, 12 in steppes and semi-deserts, and 7 species occur in semi-deserts. According to paleogeographic reconstructions, in the Pliocene the Stavropol Upland was colonized by the flea species from the forest landscapes of Southern Europe and also of Southwest Asia and Asia Minor. Later, in the Pleistocene and Holocene, the Caucasian Isthmus continued to be colonized by mesophilous species from Southern Europe and by semi-desert species from Southern Siberia and the Turanian Province.     

The Holocene treeline in the northern Andes (Ecuador): First evidence from soil charcoal

Indications for the speed and timing of past altitudinal treeline shifts are often contradictory. Partly, this may be due to interpretation difficulties of pollen records, which are generally regional rather than local proxies. We used pedoanthracology, the identification and dating of macroscopic soil charcoal, to study vegetation history around the treeline in the northern Ecuadorian Andes. Pedoanthracology offers a complementary method to pollen-based vegetation reconstructions by providing records with high spatial detail on a local scale. The modern vegetation is tussock grass páramo (tropical alpine vegetation) and upper montane cloud forest, and the treeline is located at ca. 3600 m. Charcoal was collected from soils in the páramo (at 3890 and 3810 m) and in the forest (at 3540 m), and represents a sequence for the entire Holocene.The presence of páramo taxa throughout all three soil profiles, especially in combination with the absence of forest taxa, shows that the treeline in the study area has moved up to its present position only late in the Holocene (after ca. 5850 cal years BP). The treeline may have been situated between 3600 m and 3800 m at some time after ca. 4900 cal years BP, or it may never have been higher than it is today. The presence of charcoal throughout the profiles also shows that fires have occurred in this area at least since the beginning of the Holocene.These results contradict interpretations of palaeological data from Colombia, which suggest a rapid treeline rise at the Pleistocene–Holocene transition. They also contradict the hypothesis that man-made fires have destroyed large extents of forest above the modern treeline. Instead, páramo fires have probably contributed to the slowness of treeline rise during the Holocene.     

Vegetation Response and Landscape Dynamics of Indian Summer Monsoon Variations during Holocene: An Eco-Geomorphological Appraisal of Tropical Evergreen Forest Subfossil Logs

The high rainfall and low sea level during Early Holocene had a significant impact on the development and sustenance of dense forest and swamp-marsh cover along the southwest coast of India. This heavy rainfall flooded the coastal plains, forest flourishing in the abandoned river channels and other low-lying areas in midland.The coastline and other areas in lowland of southwestern India supply sufficient evidence of tree trunks of wet evergreen forests getting buried during the Holocene period under varying thickness of clay, silty-clay and even in sand sequences. This preserved subfossil log assemblage forms an excellent proxy for eco-geomorphological and palaeoclimate appraisal reported hitherto from Indian subcontinent, and complements the available palynological data. The bulk of the subfossil logs and partially carbonized wood remains have yielded age prior to the Holocene transgression of 6.5 k yrs BP, suggesting therein that flooding due to heavy rainfall drowned the forest cover, even extending to parts of the present shelf. These preserved logs represent a unique palaeoenvironmental database as they contain observable cellular structure. Some of them can even be compared to modern analogues. As these woods belong to the Late Pleistocene and Holocene, they form a valuable source of climate data that alleviates the lack of contemporaneous meteorological records. These palaeoforests along with pollen proxies depict the warmer environment in this region, which is consistent with a Mid Holocene Thermal Maximum often referred to as Holocene Climate Optimum. Thus, the subfossil logs of tropical evergreen forests constitute new indices of Asian palaeomonsoon, while their occurrence and preservation are attributed to eco-geomorphology and hydrological regimes associated with the intensified Asian Summer Monsoon, as recorded elsewhere.     

The roles of geological history and colonization abilities in genetic differentiation between mammalian populations in the Philippine archipelago

Aim To test hypotheses that: (1) late Pleistocene low sea‐level shorelines (rather than current shorelines) define patterns of genetic variation among mammals on oceanic Philippine islands; (2) species‐specific ecological attributes, especially forest fidelity and vagility, determine the extent to which common genetic patterns are exhibited among a set of species; (3) populations show reduced within‐population variation on small, isolated oceanic islands; (4) populations tend to be most highly differentiated on small, isolated islands; and (5) to assess the extent to which patterns of genetic differentiation among multiple species are determined by interactions of ecological traits and geological/geographic conditions. Location The Philippine Islands, a large group of oceanic islands in Southeast (SE) Asia with unusually high levels of endemism among mammals. Methods Starch‐gel electrophoresis of protein allozymes of six species of small fruit bats (Chiroptera, Pteropodidae) and one rodent (Rodentia, Muridae). Results Genetic distances between populations within all species are not correlated with distances between present‐day shorelines, but are positively correlated with distances between shorelines during the last Pleistocene period of low sea level; relatively little intraspecific variation was found within these ‘Pleistocene islands’. Island area and isolation of oceanic populations have only slight effects on standing genetic variation within populations, but populations on some isolated islands have heightened levels of genetic differentiation, and reduced levels of gene flow, relative to other islands. Species associated with disturbed habitat (all of which fly readily across open habitats) show more genetic variation within populations than species associated with primary rain forest (all of which avoid flying out from beneath forest canopy). Species associated with disturbed habitats, which tend to be widely distributed in SE Asia, also show higher rates of gene flow and less differentiation between populations than species associated with rain forest, which tend to be Philippine endemic species. One rain forest bat has levels of gene flow and heterozygosity similar to the forest‐living rodent in our study. Main conclusions The maximum limits of Philippine islands that were reached during Pleistocene periods of low sea level define areas of relative genetic homogeneity, whereas even narrow sea channels between adjacent but permanently isolated oceanic islands are associated with most genetic variation within the species. Moreover, the distance between ‘Pleistocene islands’ is correlated with the extent of genetic distances within species. The structure of genetic variation is strongly influenced by the ecology of the species, predominantly as a result of their varying levels of vagility and ability to tolerate open (non‐forested) habitat. Readily available information on ecology (habitat association and vagility) and geological circumstances (presence or absence of Pleistocene land‐bridges between islands, and distance between oceanic islands during periods of low sea level) are combined to produce a simple predictive model of likely patterns of genetic differentiation (and hence speciation) among these mammals, and probably among other organisms, in oceanic archipelagos.     

Holocene global warming and the origin of the Neotropical Gran Sabana in the Venezuelan Guayana

Aim The assumedly anomalous occurrence of savannas and forest–savanna mosaics in the Gran Sabana – a neotropical region under a climate more suitable for tropical rain forests – has been attributed to a variety of historical, climatic, and anthropogenic factors. This paper describes a previously undocumented shift in vegetation and climate that occurred during the early Holocene, and evaluates its significance for the understanding of the origin of the Gran Sabana vegetation. Location A treeless savanna locality of the Gran Sabana (4°30′–6°45′ N and 60°34′–62°50′ W), in the Venezuelan Guayana of northern South America, at the headwaters of the Caroní river, one of the major tributaries of the Orinoco river. Methods Pollen and charcoal analysis of a previously dated peat section spanning from about the Pleistocene/Holocene boundary until the present. Results Mesothermic cloud forests dominated by Catostemma (Bombacaceae) occupied the site around the Pleistocene/Holocene boundary. During the early Holocene, a progressive but relatively rapid trend towards savanna vegetation occurred, and eventually the former cloud forests were replaced by a treeless savanna. Some time after the establishment of savannas, a marked increase in charcoal particles indicates the occurrence of the first local fires. Main conclusions The occurrence of cloud forests at the Pleistocene/Holocene boundary contradicts the historical hypothesis according to which the Gran Sabana is a relict of the hypothetical widespread savannas that have been assumed to have dominated the region during the last glaciation. The first local fires recorded in the Holocene were on savanna vegetation, which is against the hypothesis of fire as the triggering factor for the establishment of these savannas. Climate change, in the form of global warming and a persistently drier climate, emerges as the most probable cause for the forest–savanna turnover.     

Testate amoebae in late quaternary sediments of the Cape Mamontov Klyk (Yakutia)

The results of the analysis of Rhizopoda from permafrost sediments of the cryolithozone of northeastern Siberia are presented. Testate amoeba communities (Rhizopoda: Testaceafilosea, Testacealobosea) of the late Pleistocene and Holocene and modern habitats of the Cape Mamontov Klyk (the Laptev Sea coast in the vicinity of the Lena River estuary) have been researched. The paleocommunity structure was examined; assessment of rhizopod diversity in sediments of different (fluvial, alluvial, ice complex, alas, and alluvial-dealluvial) geneses was conducted.     

MAMMALIAN EXTINCTIONS IN THE LATE PLEISTOCENE OF NORTHERN EURASIA AND NORTH AMERICA

The 'mass extinctions' at the end of the Pleistocene were unique, both in the Pleistocene and earlier in the geological record, in that the species lost were nearly all large terrestrial mammals. Although a global phenomenon, late Pleistocene extinctions were most severe in North America, South America and Australia, and moderate in northern Eurasia (Europe plus Soviet Asia). In Africa, where nearly all of the late Pleistocene 'megafauna' survives to the present day, losses were slight. Ruling out epidemic disease or cosmic catastrophe, the contending hypotheses to explain late Pleistocene extinctions are: (a) failure to adapt to climatic/environmental change; and (b) extermination by human hunters ('prehistoric overkill'). This review focuses on extinctions in northern Eurasia (mainly Europe) in comparison with North America. In addition to reviewing the faunal evidence, the highly relevant environmental and archaeological backgrounds are summarized. The latest survival dates of extinct species are estimated from stratigraphic occurrences of fossil remains, radiocarbon dates, or association with archaeological industries. The Middle and Upper Pleistocene (ca. 700,000-10,000 BP) in northern Eurasia and North America was a time of constantly changing climate, ranging from phases of extensive glaciation in cold stages, to temperate periods (interglacials). In the Lateglacial (ca. 15,000-10,000 BP), during which most extinctions occurred, there was a major reorganization of vegetation, mainly involving the replacement of open vegetation by forests. These changes were more profound than earlier in the Last Cold Stage, but similar in nature to vegetational changes that took place at previous cold stage/interglacial transitions. The archaeological record shows that humans have been present in Europe since the early Middle Pleistocene. The arrival in Europe ca. 35,000 BP of 'anatomically modern humans', with their technologically more advanced upper palaeolithic industries, was a 'quantum leap' in human history. Extinctions occurred throughout the European Pleistocene, but until the late Pleistocene most losses were replaced by the evolution or immigration of new species, and most of those lost without replacement were small mammals. In marked contrast, extinctions without replacement in the late Pleistocene were almost entirely confined to the largest mammals (greater than 1000 kg) and some medium-large species (100-1000 kg).(ABSTRACT TRUNCATED AT 400 WORDS)     

Genotyping of Capreolus pygargus fossil DNA from Denisova cave reveals phylogenetic relationships between ancient and modern populations

Background

The extant roe deer (Capreolus Gray, 1821) includes two species: the European roe deer (C. capreolus) and the Siberian roe deer (C. pygargus) that are distinguished by morphological and karyotypical differences. The Siberian roe deer occupies a vast area of Asia and is considerably less studied than the European roe deer. Modern systematics of the Siberian roe deer remain controversial with 4 morphological subspecies. Roe deer fossilized bones are quite abundant in Denisova cave (Altai Mountains, South Siberia), where dozens of both extant and extinct mammalian species from modern Holocene to Middle Pleistocene have been retrieved.

Methodology/Principal Findings

We analyzed a 629 bp fragment of the mitochondrial control region from ancient bones of 10 Holocene and four Pleistocene Siberian roe deer from Denisova cave as well as 37 modern specimen belonging to populations from Altai, Tian Shan (Kyrgyzstan), Yakutia, Novosibirsk region and the Russian Far East. Genealogical reconstructions indicated that most Holocene haplotypes were probably ancestral for modern roe deer populations of Western Siberia and Tian Shan. One of the Pleistocene haplotypes was possibly ancestral for modern Yakutian populations, and two extinct Pleistocene haplotypes were close to modern roe deer from Tian Shan and Yakutia. Most modern geographical populations (except for West Siberian Plains) are heterogeneous and there is some tentative evidence for structure. However, we did not find any distinct phylogenetic signal characterizing particular subspecies in either modern or ancient samples.

Conclusion/Significance

Analysis of mitochondrial DNA from both ancient and modern samples of Siberian roe deer shed new light on understanding the evolutionary history of roe deer. Our data indicate that during the last 50,000 years multiple replacements of populations of the Siberian roe deer took place in the Altai Mountains correlating with climatic changes. The Siberian roe deer represent a complex and heterogeneous species with high migration rates and without evident subspecies structure. Low genetic diversity of the West Siberian Plain population indicates a recent bottleneck or founder effect.     

Pollen-based reconstructions of biome distributions for Australia, Southeast Asia and the Pacific (SEAPAC region) at 0, 6000 and 18,000 14C yr BP

Aim This paper documents reconstructions of the vegetation patterns in Australia, Southeast Asia and the Pacific (SEAPAC region) in the mid‐Holocene and at the last glacial maximum (LGM). Methods Vegetation patterns were reconstructed from pollen data using an objective biomization scheme based on plant functional types. The biomization scheme was first tested using 535 modern pollen samples from 377 sites, and then applied unchanged to fossil pollen samples dating to 6000 ± 500 or 18,000 ± 1000 ¹⁴C yr bp . Results 1. Tests using surface pollen sample sites showed that the biomization scheme is capable of reproducing the modern broad‐scale patterns of vegetation distribution. The north–south gradient in temperature, reflected in transitions from cool evergreen needleleaf forest in the extreme south through temperate rain forest or wet sclerophyll forest (WSFW) and into tropical forests, is well reconstructed. The transitions from xerophytic through sclerophyll woodlands and open forests to closed‐canopy forests, which reflect the gradient in plant available moisture from the continental interior towards the coast, are reconstructed with less geographical precision but nevertheless the broad‐scale pattern emerges. 2. Differences between the modern and mid‐Holocene vegetation patterns in mainland Australia are comparatively small and reflect changes in moisture availability rather than temperature. In south‐eastern Australia some sites show a shift towards more moisture‐stressed vegetation in the mid‐Holocene with xerophytic woods/scrub and temperate sclerophyll woodland and shrubland at sites characterized today by WSFW or warm‐temperate rain forest (WTRF). However, sites in the Snowy Mountains, on the Southern Tablelands and east of the Great Dividing Range have more moisture‐demanding vegetation in the mid‐Holocene than today. South‐western Australia was slightly drier than today. The single site in north‐western Australia also shows conditions drier than today in the mid‐Holocene. Changes in the tropics are also comparatively small, but the presence of WTRF and tropical deciduous broadleaf forest and woodland in the mid‐Holocene, in sites occupied today by cool‐temperate rain forest, indicate warmer conditions. 3. Expansion of xerophytic vegetation in the south and tropical deciduous broadleaf forest and woodland in the north indicate drier conditions across mainland Australia at the LGM. None of these changes are informative about the degree of cooling. However the evidence from the tropics, showing lowering of the treeline and forest belts, indicates that conditions were between 1 and 9 °C (depending on elevation) colder. The encroachment of tropical deciduous broadleaf forest and woodland into lowland evergreen broadleaf forest implies greater aridity. Main conclusions This study provides the first continental‐scale reconstruction of mid‐Holocene and LGM vegetation patterns from Australia, Southeast Asia and the Pacific (SEAPAC region) using an objective biomization scheme. These data will provide a benchmark for evaluation of palaeoclimate simulations within the framework of the Palaeoclimate Modelling Intercomparison Project.