Patterns of species interaction strength in assembled theoretical competition communities

Strength of interactions between species may be an important tool in our effort to understand community structure. Recent theoretical and empirical findings suggest that despite the presence of some strong interactions, weak interactions prevail in communities. Here, we examine how mean interaction strengths change as theoretical competition communities assemble and what the distribution of interaction coefficients is in the communities that are formed during the assembly process. Our results show that the mean competition strengths fall as assembly progresses and that most interactions in the communities formed are weak. Communities that are invulnerable to further invasions are those where interspecific interactions are weaker than the average interaction strength between species in the pool. If these results can be generalized to more than one trophic level, implications for management and conservation of natural communities are substantial.     

Reconciling empirical interactions and species coexistence

Coexistence in ecological communities is governed largely by the nature and intensity of species interactions. Countless studies have proposed methods to infer these interactions from empirical data, yet models parameterised using such data often fail to recover observed coexistence patterns. Here, we propose a method to reconcile empirical parameterisations of community dynamics with species‐abundance data, ensuring that the predicted equilibrium is consistent with the observed abundance distribution. To illustrate the approach, we explore two case studies: an experimental freshwater algal community and a long‐term time series of displacement in an intertidal community. We demonstrate how our method helps recover observed coexistence patterns, capture the core dynamics of the system, and, in the latter case, predict the impacts of experimental extinctions. Collectively, these results demonstrate an intuitive approach for reconciling observed and empirical data, improving our ability to explore the links between species interactions and coexistence in natural systems.     

南亚热带森林群落种-多度的对数正态分布模型研究

通过对地处南亚热带的广东省黑石顶自然保护区森林群落的定点研究结果的分析表明：当用１,２,３,…分组每种个体数ｒ时,５个不同类型的群落样地的种一多度分布的直方图都呈明显的倒Ｊ－形;经Ｐｒｅｓｔｏｎ“倍程（ｏｃｔａｖｅｓ）”法分组ｒ后,其种－多度都服从对数正态分布。由种－多度模型可以推出另一新的模型一个体一多度分布模型,即Ｉ（Ｒ）＝２R0ＳＯＥＸＰ［［１ｎ２）２／４ａ２〕ＥＸＰ｛－ａ２（Ｒ－（ＲＯ＋１ｎ２／２ａ２）］２｝,它也符合对数正态分布。另外,还运用积分方法推导出估计总体（整个群落）中总种数Ｓ*和总个体数Ｉ*理论值的公式,用此公式估计的结果较为合理。     

Biological invasions and the neutral theory

Aim  The invasion of natural communities by alien species represents a serious threat, but creates opportunities to learn about community functions. Neutral theory proposes that the niche concept may not be needed to explain the assemblage and diversity of natural communities, challenging the classical view of community ecology and generating a lasting debate. Biological invasions, when considered as natural experiments, can be used to contrast some of the predictions of neutral and classic niche theories.
Location  Global.
Methods  We use data from biological invasions as natural experiments to contrast some of the fundamental predictions of neutral theory.
Results  Some emerging patterns did not differ from neutral model expectations (e.g. the relationship between native and exotic species richness, invasibility of resource-rich habitats, and the relationship between propagule release and invasion success). Nevertheless, other patterns (e.g. experimental evidence of the relationship between diversity and susceptibility to invasion, the invasion of communities with a low resource availability, invasiveness related to species traits) contrasted with the predictions that can be inferred from neutral theory.
Main conclusions  Neutral theory correctly highlights the need to include randomness in models of community structure. Biological invasion patterns show that neutral forces are important in structuring natural communities, but the patterns differ from those inferred from a complete neutral model. For biodiversity-conservation purposes, the implications of accepting or not accepting neutral theory as a process-based theory are very important.     

Analytical theory of species abundance distributions of a random community model

We review the history and recent progress of the analytical theories of a random community models. In particular, we focus on a global stability analysis of replicator equations with random interactions and species abundance distributions based on statistical mechanics.     

Neutral theory and the species abundance distribution: recent developments and prospects for unifying niche and neutral perspectives

Published in 2001, The Unified Neutral Theory of Biodiversity and Biogeography (UNTB) emphasizes the importance of stochastic processes in ecological community structure, and has challenged the traditional niche‐based view of ecology. While neutral models have since been applied to a broad range of ecological and macroecological phenomena, the majority of research relating to neutral theory has focused exclusively on the species abundance distribution (SAD). Here, we synthesize the large body of work on neutral theory in the context of the species abundance distribution, with a particular focus on integrating ideas from neutral theory with traditional niche theory. First, we summarize the basic tenets of neutral theory; both in general and in the context of SADs. Second, we explore the issues associated with neutral theory and the SAD, such as complications with fitting and model comparison, the underlying assumptions of neutral models, and the difficultly of linking pattern to process. Third, we highlight the advances in understanding of SADs that have resulted from neutral theory and models. Finally, we focus consideration on recent developments aimed at unifying neutral‐ and niche‐based approaches to ecology, with a particular emphasis on what this means for SAD theory, embracing, for instance, ideas of emergent neutrality and stochastic niche theory. We put forward the argument that the prospect of the unification of niche and neutral perspectives represents one of the most promising future avenues of neutral theory research.     

Behavioural interactions between ecosystem engineers control community species richness

Behavioural interactions between ecosystem engineers may strongly influence community structure. We tested whether an invasive ecosystem engineer, the alga Caulerpa taxifolia , indirectly facilitated community diversity by modifying the behaviour of a native ecosystem engineer, the clam Anadara trapezia , in southeastern Australia . In this study, clams in Caulerpa -invaded sediments partially unburied themselves, extending >30% of their shell surface above the sediment, providing rare, hard substrata for colonization. Consequently, clams in Caulerpa had significantly higher diversity and abundance of epibiota compared with clams in unvegetated sediments. To isolate the role of clam burial depth from direct habitat influences or differential predation by habitat, we manipulated clam burial depth, predator exposure and habitat ( Caulerpa or unvegetated) in an orthogonal experiment. Burial depth overwhelmingly influenced epibiont species richness and abundance, resulting in a behaviourally mediated facilitation cascade. That Caulerpa controls epibiont communities by altering Anadara burial depths illustrates that even subtle behavioural responses of one ecosystem engineer to another can drive extensive community-wide facilitation.     

Exotic plant species in a C4-dominated grassland: invasibility, disturbance, and community structure

We used data from a 15-year experiment in a C₄-dominated grassland to address the effects of community structure (i.e., plant species richness, dominance) and disturbance on invasibility, as measured by abundance and richness of exotic species. Our specific objectives were to assess the temporal and spatial patterns of exotic plant species in a native grassland in Kansas (USA) and to determine the factors that control exotic species abundance and richness (i.e., invasibility). Exotic species (90% C₃ plants) comprised approximately 10% of the flora, and their turnover was relatively high (30%) over the 15-year period. We found that disturbances significantly affected the abundance and richness of exotic species. In particular, long-term annually burned watersheds had lower cover of exotic species than unburned watersheds, and fire reduced exotic species richness by 80–90%. Exotic and native species richness were positively correlated across sites subjected to different fire (r = 0.72) and grazing (r = 0.67) treatments, and the number of exotic species was lowest on sites with the highest productivity of C₄ grasses (i.e., high dominance). These results provide strong evidence for the role of community structure, as affected by disturbance, in determining invasibility of this grassland. Moreover, a significant positive relationship between exotic and native species richness was observed within a disturbance regime (annually burned sites, r = 0.51; unburned sites, r = 0.59). Thus, invasibility of this C₄-dominated grassland can also be directly related to community structure independent of disturbance. Received: 9 February 1999 / Accepted: 12 May 1999     

群落构建的中性理论和生态位理论

物种共存和生物多样性维持一直是生态学研究的中心论题。基于物种生态位分化的群落构建理论已经发展了近一个世纪, 但我们对群落构建和生物多样性维持的机理仍然不清楚。近年来, 群落中性理论以其简约性和预测能力成为群落生态学研究的焦点, 但由于其“物种在生态功能上等价”的假设与大量研究结果相悖, 同时对自然群落结构的准确预测也只限于少数的生态系统, 因而饱受质疑。如今, 越来越多的生态学家认为群落构建的生态位理论与中性理论之争的最终归宿应该是二者的整合。 在本文中, 我们在简要回顾生态位理论和群落中性理论发展的基础上, 分析二者之间的主要分歧和互补性, 试图梳理二者整合的途径。我们认为, 尽管中性理论的发展极大地丰富了群落构建理论, 但二者的整合尚处于初级阶段; 群落构建零模型假说、中性—生态位连续体假说、随机生态位假说等都不失为有价值的尝试, 今后需要在其他类型的生态系统中进行实验验证, 以更好地理解确定性过程和随机过程在决定群落构建和生物多样性维持中的作用。     

种间互作对雷州湾海域鱼类群落结构的影响

从鱼类种间互作及其生态网络特征视角研究鱼类群落结构特征,对解析多鱼种共存机制和基于群落水平的多鱼种资源管理均具有重要意义。为分析鱼类资源利用的竞争互作对群落结构稳定性的影响,根据2016-2018年8个航次的雷州湾海域底拖网调查的鱼类数据,将空间生态位重叠理论和生态网络建模相结合,从种间互作的角度应用加权聚类系数C、加权平均路径长度A、关联度Co等指标分析鱼类的群落结构。结果表明：①鱼类生态位重叠所形成的种间互作网络季节变动较大,而年度变动则相对较小,共包含鱼类58-122种,种间互作的关系数量1318-7103。②雷州湾海域鱼类群落内种间互作密集,聚合程度高（C介于0.84-0.98）且能量传递效率高（A介于0.02-0.09）,呈现互作弱化之趋势（Co介于0.32-0.48）,群落结构总体较稳定。③小尺度范围（20°40''-21°00''N,110°30''-110°45''E）内,鱼类群落内种间互作特征是维持多种鱼类共存的重要内因。该特征表现为季节和年度的变化总体上相似,种间直接关联程度与种间互作强度呈正相关（P<0.01）,而局部聚合程度与种间直接关联、互作强度均呈负相关（P<0.01）。本研究可为鱼类群落结构稳定性的量化评价和资源养护的管理规划提供参考依据。     

宁夏荒漠草原植物群落结构和物种多样性研究

采用样方法对宁夏荒漠草原植物群落进行了调查,对群落结构、功能群物种组成和物种多样性以及群落生产力的关系进行探讨。结果表明,群落生产力除受物种多样性的影响外,也受物种本身特征和环境资源的影响。在荒漠草原中功能群盖度与群落初级生产力无显著的相关关系。功能群内物种多样性、物种数和个体数量上呈现一定的互为消长关系。     

Biodiversity of cactophilic microorganisms in western Argentina: community structure and species composition in the necroses of two sympatric cactus hosts

The cactus-yeast-Drosophila system is a model system in evolutionary biology, and the participating saprotrophic microorganisms represent one of the most thoroughly studied microbial communities. However, much of the cactus-dominated regions of South America, home to endemic versions of this classical system, remain understudied. A combined morpho-physiological and molecular approach was employed to identify the fungal members of the cactus-yeast-Drosophila system in western Argentina. We identified twenty one species of saprotrophic organisms in the necroses of Opuntia sulphurea and Trichocereus terscheckii in a region of sympatry, where both cacti are exploited by cactophilic Drosophila. After excluding opportunistic isolates, we determined that the saprobe community of O. sulphurea was composed of eight species (including the first consideration of filamentous fungi as community members), whereas the community of T. terscheckii represented a subgroup of the former. We explain this nested pattern by considering the physiological and ecological attributes of both hosts and vectors involved.     

Neutral theory and community ecology

I review the mathematical and biological aspects of Hubbell's (2001) neutral theory of species abundance for ecological communities, and clarify its historical connections with closely related approaches in population genetics. A selective overview of the empirical evidence for and against this theory is provided, with a special emphasis on tropical plant communities. The neutral theory predicts many of the basic patterns of biodiversity, confirming its heuristic power. The strict assumption of equivalence that defines neutrality, equivalence among individuals, finds little empirical support in general. However, a weaker assumption holds for stable communities, the equivalence of average fitness among species. One reason for the surprising success of the neutral theory is that all the theories of species coexistence satisfying the fitness equivalence assumption, including many theories of niche differentiation, generate exactly the same patterns as the neutral theory. Hubbell's neutral theory represents an important synthesis and a much needed demonstration of the pivotal role of intraspecific variability in ecology. Further improvements should lead to an explicit linking to niche‐based processes. This research programme will depend crucially on forthcoming theoretical and empirical achievements.     

Heteromyopia and the spatial coexistence of similar competitors

Most spatial models of competing species assume symmetries in the spatial scales of dispersal and interactions. This makes analysis tractable, and has led to the conclusion that segregation of species in space does not promote coexistence. However, these symmetries leave parts of the parameter space uninvestigated. Using a moment‐approximation method, we present a spatial version of the Lotka–Volterra competition equations to investigate effects of removing symmetries in the distances over which individuals disperse and interact. Some spatial segregation of the species always comes about due to competition, and such segregation does not necessarily lead to coexistence. But, if interspecific competition occurs over shorter distances than intraspecific competition (heteromyopia), spatial segregation becomes strong enough to promote coexistence. Such coexistence is most likely when the species have similar dynamics, in contrast to the competition–colonization trade‐off that requires large competitive differences between species.     

War of the weeds: Competition hierarchies in invasive species

Invasive plant species succeed because they are able to propagate and disperse into unoccupied habitat, outcompete and suppress other plant species or use a combination of these two strategies. Ecosystems are often invaded by multiple species and it is important to determine which species are likely to dominate plant communities through competition and which species will succeed by other means. We assessed frequency and abundance of 65 invasive species over 1700 km of riparian zone in the Burdekin catchment of North Queensland, Australia and established a dominance hierarchy for those species. The cover of every invasive and one native shrub known to have increased in abundance in historical times, was surveyed in quadrats as part of a nested hierarchical design consisting of 8030 quadrats, within 803 transects, within 90 sites. Total species cover and species frequency were derived from the results of this survey. We estimated the pairwise interactions between individual species and used a non‐parametric David Score to rank species and construct a competition hierarchy of invasive species at the quadrat and transect levels. Species frequency and cover were highly correlated (r² = 0.81). The competition hierarchy of species at the quadrat level was moderately related to species cover, but poorly related to species frequency (r² = 0.24 and 0.02). The competition rank of many species, including Urochloa mosambicensis and Parthenium hysterophorus, changed markedly with scale when assessed at the quadrat and transect levels. This suggests different processes influenced their competitive success at different scales. This technique enabled us to explore and accept the hypothesis that abundant species are often the most competitive. However, some exceptions were identified in this study and these species may in time become more abundant in the catchment.     

Biodiversity as both a cause and consequence of resource availability: a study of reciprocal causality in a predator-prey system

1. One of the oldest questions in ecology is how species diversity in any given trophic level is related to the availability of essential resources that limit biomass (e.g. water, nutrients, light or prey). Researchers have tried to understand this relationship by focusing either on how diversity is influenced by the availability of resources, or alternatively, how resource abundance is influenced by species diversity. These contrasting perspectives have led to a seeming paradox '... is species diversity the cause or the consequence of resources that limit community biomass?' 2. Here we present results of an experiment that show it is possible for species diversity and resource density to exhibit reciprocal causal relationships in the same ecological system. Using a guild of ladybeetle predators and their aphid prey, we manipulated the number of predator species in field enclosures to examine how predator diversity impacts prey population size. At the same time, we manipulated the abundance of aphid prey in discrete habitat patches within each enclosure to determine how smaller-scale spatial variation in resource abundance affects the number of co-occurring predator species. 3. We found that the number of ladybeetle species added to enclosures had a significant impact on aphid population dynamics because interference competition among the predators reduced per capita rates of predation and, in turn, the overall efficiency of the predator guild. At the same time, spatial variation in aphid abundance among smaller habitat patches generated variation in the observed richness of ladybeetles because more species occurred in patches where predators aggregated in response to high aphid density. 4. The results of our experiment demonstrate that it is possible for species diversity to simultaneously be a cause and a consequence of resource density in the same ecological system, and they shed light on how this might occur for groups of mobile consumers that exhibit rapid responses to spatial and temporal variation in their prey.     

Predicting novel trophic interactions in a non‐native world

Humans are altering the global distributional ranges of plants, while their co‐evolved herbivores are frequently left behind. Native herbivores often colonise non‐native plants, potentially reducing invasion success or causing economic loss to introduced agricultural crops. We developed a predictive model to forecast novel interactions and verified it with a data set containing hundreds of observed novel plant–insect interactions. Using a food network of 900 native European butterfly and moth species and 1944 native plants, we built an herbivore host‐use model. By extrapolating host use from the native herbivore–plant food network, we accurately forecasted the observed novel use of 459 non‐native plant species by native herbivores. Patterns that governed herbivore host breadth on co‐evolved native plants were equally important in determining non‐native hosts. Our results make the forecasting of novel herbivore communities feasible in order to better understand the fate and impact of introduced plants.     

Multi‐species interactions in competitive hierarchies: New methods and empirical test

Question: Are competitive hierarchies, which are typically based on the results of pair‐wise competition experiments, sensitive to the level of species interaction in the underlying competition experiments? Location: Controlled greenhouse study using vegetation typical of old‐fields in East Tennessee, USA. Methods: We extend traditional competitive effect/response methods to incorporate data from competition experiments featuring any level of species interaction (i. e., 2, 3, …, n species interacting simultaneously) and develop an ordinal technique that makes hierarchies more robust to variation in the numerical values of relative yield. We apply these methodological techniques to empirical data from a greenhouse experiment wherein four old‐field plant species were grown in pair‐wise and tri‐wise combination. We also demonstrate how resampling can be used to determine the variability of data and its consequences for development of competitive hierarchies. Results: Different hierarchies were produced when we used different evaluation methods, different levels of species interaction, and different levels of replication. More acute resampling distributions and wider ranges of target/neighbor scores revealed that higher levels of species interaction lead to more distinct hierarchies. Conclusions: Hierarchies developed from interactions among subsets of species may inadequately characterize relationships among the full community because of indirect or higher‐order interactions within multi‐species assemblages. Different evaluation methods can yield different hierarchies, and resampling is an effective tool to determine the sensitivity of resultant hierarchies to the level of replication. In sum, our new methodology can be used to control uncertainty in poorly‐replicated experiments.     

Biodiversity and species competition regulate the resilience of microbial biofilm community

The relationship between biodiversity and ecosystem stability is poorly understood in microbial communities. Biofilm communities in small bioreactors called microbial electrolysis cells (MEC) contain moderate species numbers and easy tractable functional traits, thus providing an ideal platform for verifying ecological theories in microbial ecosystems. Here, we investigated the resilience of biofilm communities with a gradient of diversity, and explored the relationship between biodiversity and stability in response to a pH shock. The results showed that all bioreactors could recover to stable performance after pH disturbance, exhibiting a great resilience ability. A further analysis of microbial composition showed that the rebound of Geobacter and other exoelectrogens contributed to the resilient effectiveness, and that the presence of Methanobrevibacter might delay the functional recovery of biofilms. The microbial communities with higher diversity tended to be recovered faster, implying biofilms with high biodiversity showed better resilience in response to environmental disturbance. Network analysis revealed that the negative interactions between the two dominant genera of Geobacter and Methanobrevibacter increased when the recovery time became longer, implying the internal resource or spatial competition of key functional taxa might fundamentally impact the resilience performances of biofilm communities. This study provides new insights into our understanding of the relationship between diversity and ecosystem functioning.