Using priced timed automaton to analyse the energy consumption in cloud computing environment

According to the fact that cloud servers have different energy consumption on different running states, as well as the energy waste problem caused by the mismatching between cloud servers and cloud tasks, we carry out researches on the energy optimal method achieved by a priced timed automaton for the cloud computing center in this paper. The priced timed automaton is used to model the running behaviors of the cloud computing system. After introducing the matching matrix of cloud tasks and cloud resources as well as the power matrix of the running states of cloud servers, we design a generation algorithm for the cloud system automaton based on the generation rules and reduction rules given ahead. Then, we propose another algorithm to settle the minimum path energy consumption problem in the cloud system automaton, therefore obtaining an energy optimal solution and an energy optimal value for the cloud system. A case study and repeated experimental analyses manifest that our method is effective and feasible.     

Phenomenon of DNA-abzyme cross-reactivity and its significance for the mechanisms of cytotoxicity and apoptosis

The physiological role of DNA-abzymes and their involvement in pathogenesis of different autoimmune disorders is still unknown. At the same time, a variety of properties and features of DNA-hydrolyzing autoantibodies have been studied. Here, the phenomenon of the cross-reactivity of DNA-abzymes with the nuclear matrix proteins was studied. The possible value of the phenomenon for the cytotoxic activity of DNA-hydrolyzing autoantibodies was debated as well. A new hypothesis is put forward regarding the DNA-abzymes formation based on the phenomenon of the cross-reactivity of polyclonal DNA-abzymes with nuclear matrix proteins free of native DNA. Preliminary results suggest that there are mechanisms of cytotoxicity mediated by DNA-abzymes and independent from the system of complement and cytotoxic T-lymphocytes.     

An algorithmic approach to constructing the on-line estimation system for the specific growth rate

The objective of this article is to propose an algorithm for the on-line estimation of the specific growth rate in a batch or a fed-batch fermentation process. The algorithm shows the practical procedure for the estimation method utilizing the macroscopic balance and the extended Kalman filter. A number of studies of the on line estimation have been presented. However, there are few studies discussing about the selection of the observed variables and for the tuning of some parameters of the extended Kalman filter, such as covariance matrix and initial values of the state.The beginning of this article is devoted to explain the selection of the observed variable. This information is very important in terms of the practical know-how for using technique. It is discovered that the condition number is a practically useful and valid criterion for number is a practically useful and valid criterion for choosing the variable to be observed.Next, when the extended Kalman filter in applied to the online estimation of the specific growth rate, which is directly unmeasurable, criteria for judging the validity of the estimated value from the observed data are proposed. Based on the proposed criterial, the system equation of the specific growth rate is selected and initial value of the state variable and covariance matrix of the system noises are adjusted. From many experiments, it is certified that the specific growth rate in the batch or fed -batch fermentation can be estimated accurately by means of the algorithm proposed here. In these experiments, that is, when the cell concentration is measured directly, the extended Kalman filter using the convariance matrix with a constant element can estimate more accurately values of the specific growth rate than the adaptive extended Kalman filter does.     

A Phenomenon of DNA-Abzyme Cross-Reactivity and Its Significance for the Mechanisms of Cytoxicity and Apoptosis

The physiological role of DNA-abzymes and their involvement in pathogenesis of different autoimmune disorders is still unknown. At the same time, a variety of properties and features of DNA-hydrolyzing autoantibodies have been studied. Here, the phenomenon of the cross-reactivity of DNA-abzymes with the nuclear matrix proteins was studied. The possible value of the phenomenon for the cytotoxic activity of DNA-hydrolyzing autoantibodies was debated as well. A new hypothesis is put forward regarding the DNA-abzymes formation based on the phenomenon of the cross-reactivity of polyclonal DNA-abzymes with nuclear matrix proteins free of native DNA. Preliminary results suggest that there are mechanisms of cytotoxicity mediated by DNA-abzymes and independent from the system of complement and cytotoxic T-lymphocytes.     

Retention of telescopic denture in elderly patients with maximum partially edentulous arch

The telescopic denture is one possible solution for prosthetic rehabilitation for a partially dentate arch with few remaining teeth, which is the reason why it is usually considered in elderly patients. The system of double crowns consists of the male component of attachment or patrix, which is cemented to the abutment tooth, and the female component of attachment or matrix, which is the removable part of the restoration. Retention force represents resistance to those forces which tend to separate the partial denture and supporting tissue in the occlusal direction. Its optimal value is 5–9 N per each patrix and it should strictly be between these limits as a stronger or weaker force will endanger the functionality of the denture or damage the supporting tissue of the abutment teeth. Objective: The goal of this study was to establish the exact value of the individual and total retention force of the completed telescopic system. Method: The Bredent dynamometer was used for measuring these values. The study involved measuring the individual force of separation of 50 patrix–matrix components, and total force of 20 partial dentures of various designs retained by double crowns made in the Dental Laboratory of the Clinic for Prosthetic Dentistry, Faculty of Stomatology, Belgrade University. The research was carried out in the period from January 2006 to October 2006. Results and conclusion: The results showed different values of separation force – from very low values to those exceeding optimal limits. A reduction in the force of separation is necessary in the case of excessive tightness. If there was looseness between patrix and matrix, the cylindrical components of double crowns need to be lined by a suitable composite material.     

Modeling extracellular matrix degradation balance with proteinase/transglutaminase cycle

Extracellular matrix mass balance is implied in many physiological and pathological events, such as metastasis dissemination. Widely studied, its destructive part is mainly catalysed by extracellular proteinases. Conversely, the properties of the constructive part are less obvious, cellular neo-synthesis being usually considered as its only element. In this paper, we introduce the action of transglutaminase in a mathematical model for extracellular matrix remodeling. This extracellular enzyme, catalysing intermolecular protein cross-linking, is considered here as a reverse proteinase as far as the extracellular matrix physical state is concerned. The model is based on a proteinase/transglutaminase cycle interconverting insoluble matrix and soluble proteolysis fragments, with regulation of cellular proteinase expression by the fragments. Under "closed" (batch) conditions, i.e. neglecting matrix influx and fragment efflux from the system, the model is bistable, with reversible hysteresis. Extracellular matrix proteins concentration abruptly switches from low to high levels when transglutaminase activity exceeds a threshold value. Proteinase concentration usually follows the reverse complementary kinetics, but can become apparently uncoupled from extracellular matrix concentration for some parameter values. When matrix production by the cells and fragment degradation are taken into account, the dynamics change to sustained oscillations because of the emergence of a stable limit cycle. Transitions out of and into oscillation areas are controlled by the model parameters. Biological interpretation indicates that these oscillations could represent the normal homeostatic situation, whereas the other exhibited dynamics can be related to pathologies such as tumor invasion or fibrosis. These results allow to discuss the insights that the model could contribute to the comprehension of these complex biological events.     

Pectin Matrix as Oral Drug Delivery Vehicle for Colon Cancer Treatment

Colon cancer is the fourth most common cancer globally with 639,000 deaths reported annually. Typical chemotherapy is provided by injection route to reduce tumor growth and metastasis. Recent research investigates the oral delivery profiles of chemotherapeutic agents. In comparison to injection, oral administration of drugs in the form of a colon-specific delivery system is expected to increase drug bioavailability at target site, reduce drug dose and systemic adverse effects. Pectin is suitable for use as colon-specific drug delivery vehicle as it is selectively digested by colonic microflora to release drug with minimal degradation in upper gastrointestinal tract. The present review examines the physicochemical attributes of formulation needed to retard drug release of pectin matrix prior to its arrival at colon, and evaluate the therapeutic value of pectin matrix in association with colon cancer. The review suggests that multi-particulate calcium pectinate matrix is an ideal carrier to orally deliver drugs for site-specific treatment of colon cancer as (1) crosslinking of pectin by calcium ions in a matrix negates drug release in upper gastrointestinal tract, (2) multi-particulate carrier has a slower transit and a higher contact time for drug action in colon than single-unit dosage form, and (3) both pectin and calcium have an indication to reduce the severity of colon cancer from the implication of diet and molecular biology studies. Pectin matrix demonstrates dual advantages as drug carrier and therapeutic for use in treatment of colon cancer.     

A poroelastic continuum model of the cupula partition and the response dynamics of the vestibular semicircular canal.

Using mixture theory, an axisymmetric continuum model is presented describing the response dynamics of the vestibular semicircular canals to canal-centered head rotation in which the cupula partition is modeled as a poroelastic mixture of interpenetrating solid and fluid constituents. The solid matrix of the cupula is assumed to behave as a linear elastic material, whereas the fluid constituent is assumed to be Newtonian. A regular perturbation analysis of the fluid dynamics in the canal provides a dynamic boundary condition, which acts across the cupula partition. Numerical solution of the coupled system of momentum equations provides the spatio-temporal displacement fields for both the fluid and solid constituents of the cupula. Results indicate that at frequencies above 1 Hz, the fluid constituent is dynamically entrained by the solid matrix such that their motions are bound as if to exist as a single component. The resulting high-frequency response is consistent with the macromechanical response predicted by single-component viscoelastic models of the cupula. Below 1 Hz, the dynamic coupling between the fluid and solid constituents weakens and the transcupular differential pressure is sufficient to force fluid through the mixture with little deformation of the solid matrix. Results are sensitive to the precise value of the cupular permeability. One of the most important distinctions between the present analysis and previous impermeable models of the cupula arises at the micromechanical level in terms of the local fluid flow that is predicted to occur within the cupula and around the ciliary bundles and sensory hair cells. Another important result reveals that the permeation dynamics predicted below 1 Hz gives rise to the same low-frequency macromechanical response as would occur with an impermeable viscoelastic structure having a much greater stiffness. Current estimates of the mechanical stiffness of the cupula, based solely on afferent nerve data, may therefore overestimate the true value intrinsic to the solid matrix by as much as an order of magnitude.     

Fast adaptive formation of orthogonalizing filters and associative memory in recurrent networks of neuron-like elements

A demonstration is given that an orthogonalizing filter for patterns is formed adaptively and very rapidly in a network of neuron-like elements with internal feedback connections. It is here assumed that the feedback gain is variable, and proportional to the correlation matrix of the output pattern vectors. The time-dependent signal transfer properties of the complete system are described by a system matrix which satisfies a matrix Bernoulli differential equation; solutions of this equation are outlined. The asymptotic value of the system matrix is shown to correspond to the orthogonal projection operator on the space that is complementary to the space spanned by all of the earlier input pattern vectors. Such a system then acts as a filter, which optimally extracts the amount that is new in an input pattern with respect to all old patterns. It also has features that are directly attributable to a distributed associative memory that is optimally selective.     

Inhibition of Radiation and Temozolomide-Induced Invadopodia Activity in Glioma Cells Using FDA-Approved Drugs

The most common primary central nervous system tumor in adults is the glioblastoma multiforme (GBM). The highly invasive nature of GBM cells is a significant factor resulting in the inevitable tumor recurrence and poor patient prognosis. Tumor cells utilize structures known as invadopodia to faciliate their invasive phenotype. In this study, utilizing an array of techniques, including gelatin matrix degradation assays, we show that GBM cell lines can form functional gelatin matrix degrading invadopodia and secrete matrix metalloproteinase 2 (MMP-2), a known invadopodia-associated matrix-degrading enzyme. Furthermore, these cellular activities were augmented in cells that survived radiotherapy and temozolomide treatment, indicating that surviving cells may possess a more invasive phenotype posttherapy. We performed a screen of FDA-approved agents not previously used for treating GBM patients with the aim of investigating their “anti-invadopodia” and cytotoxic effects in GBM cell lines and identified a number that reduced cell viability, as well as agents which also reduced invadopodia activity. Importantly, two of these, pacilitaxel and vinorelbine tartrate, reduced radiation/temozolomide-induced invadopodia activity. Our data demonstrate the value of testing previously approved drugs (repurposing) as potential adjuvant agents for the treatment of GBM patients to reduce invadopodia activity, inhibit GBM cell invasion, and potentially improve patient outcome.     

Pharmacotoxicological applications of an equivalent dermis: three measurements of cytotoxicity

The legal procedure for evaluating the toxicity of cosmetic, household, chemical and pharmaceutical products is still the irritancy Draize test on rabbits. Various irritation tests are currently being developed as alternatives toin vivo animal testing. Ourin vitro model system is composed of 24 equivalent dermis (ED) comprising a chitosan-cross-linked collagen-glycosaminoglycan matrix populated by foreskin fibroblasts. In evaluating this system for irritancy testing, three different measures of toxicity were used: MTT (dimethylthiazol diphenyltetrazolium bromide) reduction, and lactate dehydrogenase and interleukin-6 release. The experiments described herein represent a preliminary evaluation to determine the usefulness and predictive value of our 24 ED kit as an alternative method for the prediction of human dermal reaction, versus three chemical products: cadmium chloride, lauryl sulfate, and benzalkonium chloride. Preliminary results suggest that the ED may be a usefulin vitro model for the prediction of cutaneous and ocular toxicity and allow the development of a 24-skin-equivalent kit realized by seeding human normal keratinocytes onto the equivalent dermis.Abbreviations ED equivalent dermis - ECM extracellular matrix - FCM fibroblast culture medium - LDH lactate dehydrogenase - IL-6 interleukin-6 - MTT dimethylthiazol diphenyltetrazolium bromide     

Spectral sensitivity in linear biological models

Properties of spectral components of the system matrix of linear time-invariant discrete or continuous models are investigated. It is shown that the entries in these matrices have the interpretation of being the sensitivity of the system matrix eigenvalues with respect to the model parameters. The spectral resolution formula for linear operators is used to get explicit results about component matrices and eigenvalue sensitivity. In biological modeling, particular interest is in the real maximal or minimal roots of the system matrix. Exact formulation of the related spectral components is made in important system matrix cases such as companion, Leslie, ecosystem, compartmental, and stochastic matrices.     

A new dynamic model system for the study of capture reactions for diffusable compounds in cytochemistry. I. Description of the model with special attention to phosphate capture in acid phosphatase cytochemistry

A model system is described for the investigation of the dynamics of precipitation processes in a matrix. In this system a solution containing the molecular species to be precipitated and the precipitating medium are pumped along opposite sides of a polyacrylamide film. The solutions flowing continuously along the film, interact and can form a precipitate inside the film. The applicability of the model was tested on the capture reaction for phosphate ions by the Gomori type medium for acid phosphatase. Precipitation of lead phosphate in the film occurred only at a phosphate concentration above a certain value. The dependence of this minimal phosphate concentration on various parameters was studied and the results were compared with values found in earlier model studies and calculations concerning phosphate concentrations that can be built up in lysosomes during the Gomori reaction. The system seems promising for obtaining fundamental data about other cytochemical enzyme trapping reactions as well as for the matrix facotrs involved in bone calcification and shell formation.     

Value of service based resource management for large-scale computing systems

Task scheduling for large-scale computing systems is a challenging problem. From the users perspective, the main concern is the performance of the submitted tasks, whereas, for the cloud service providers, reducing operation cost while providing the required service is critical. Therefore, it is important for task scheduling mechanisms to balance users’ performance requirements and energy efficiency because energy consumption is one of the major operational costs. We present a time dependent value of service (VoS) metric that will be maximized by the scheduling algorithm that take into consideration the arrival time of a task while evaluating the value functions for completing a task at a given time and the tasks energy consumption. We consider the variation in value for completing a task at different times such that the value of energy reduction can change significantly between peak and non-peak periods. To determine the value of a task completion, we use completion time and energy consumption with soft and hard thresholds. We define the VoS for a given workload to be the sum of the values for all tasks that are executed during a given period of time. Our system model is based on virtual machines, where each task will be assigned a resource configuration characterized by the number of the homogeneous cores and amount of memory. For the scheduling of each task submitted to our system, we use the estimated time to compute matrix and the estimated energy consumption matrix which are created using historical data. We design, evaluate, and compare our task scheduling methods to show that a significant improvement in energy consumption can be achieved when considering time-of-use dependent scheduling algorithms. The simulation results show that we improve the performance and the energy values up to 49% when compared to schedulers that do not consider the value functions. Similar to the simulation results, our experimental results from running our value based scheduling on an IBM blade server show up to 82% improvement in performance value, 110% improvement in energy value, and up to 77% improvement in VoS compared to schedulers that do not consider the value functions.     

Mammal responses to matrix development intensity

The landscape matrix is increasingly being recognized as important to biodiversity conservation. The nature of the matrix impacts the persistence of species in human‐modified landscapes through its pervasive influence on adjacent habitat and through the habitat value of the matrix itself. However, previous studies have not isolated the effects of the matrix from the effects of other aspects of landscape modification, such as habitat loss and fragmentation, and much remains to be understood about the independent impact of the matrix on wildlife. We investigated the effects of the matrix on mammal abundance and landscape use in south‐east Queensland, Australia. Mammals were surveyed in patch ‘core’, patch ‘edge’ and ‘matrix’ landscape elements along a rural–suburban gradient of matrix development intensity quantified by a weighted road‐length metric, which was significantly correlated with housing density, while controlling for potentially confounding patch and landscape attributes. Response to increasing matrix development intensity was highly species‐specific. Several native species declined in abundance; however, others were more resilient to moderate levels of matrix intensity, one species increased in abundance, and at least one species appeared unaffected by matrix intensity. Native species richness peaked at moderate levels of matrix development intensity. Exotic species richness and feral predators increased with matrix intensity and were negatively correlated with native species. Species response to matrix intensity appeared related to their use of edge or matrix habitat. An ability to use the matrix per se, however, may not translate into an ability to persist in a landscape where development substantially reduces the habitat or movement value of the matrix.     

Identification of Enterobacteriaceae with the Minitek system

A total of 417 strains (361 Enterobacteriaceae, 56 Vibrionaceae) was examined in all the available Minitek system tests. The results were processed through four successive identification schemes devised by the manufacturer and the proportion of strains correctly identified, not identified or incorrectly identified determined for each scheme. From the results, a probability matrix was constructed incorporating all 35 Minitek tests. Test results for each strain were then processed through this matrix to determine its success in identification. From the matrix the order of separating value of the tests was determined. Forty-three of the strains were each tested three times to assess the level of test reproducibility; the corrected error rate was 0.85%.     

Identification of Enterobacteriaceae with the Minitek system

A total of 417 strains (361 Enterobacteriaceae, 56 Vibrionaceae) was examined in all the available Minitek system tests. The results were processed through four successive identification schemes devised by the manufacturer and the proportion of strains correctly identified, not identified or incorrectly identified determined for each scheme. From the results, a probability matrix was constructed incorporating all 35 Minitek tests. Test results for each strain were then processed through this matrix to determine its success in identification. From the matrix the order of separating value of the tests was determined. Forty-three of the strains were each tested three times to assess the level of test reproducibility; the corrected error rate was 0.85%.     

基于邻接矩阵分解的肿瘤亚型特征提取方法

基于肿瘤基因表达谱的肿瘤分类是生物信息学的一个重要研究内容。传统的肿瘤信息特征提取方法大多基于信息基因选择方法,但是在筛选基因时,不可避免的会造成分类信息的流失。提出了一种基于邻接矩阵分解的肿瘤亚型特征提取方法,首先对肿瘤基因表达谱数据构造高斯权邻接矩阵,接着对邻接矩阵进行奇异值分解,最后将分解得到的正交矩阵特征行向量作为分类特征输入支持向量机进行分类识别。采用留一法对白血病两个亚型的基因表达谱数据集进行实验,实验结果证明了该方法的可行性和有效性。