历史生物地理学进展

生物地理学研究动植物的地理分布。历史生物地理学重建生物区系历史。分替理论的复兴动摇了散布理论的上百年统治。最近10年主要是分替理论推动了历史生物地理学,出现了多个途径——种系发生物地理学、分支分替生物地理学、特有性的俭吝分析和泛生物地理学。岛屿生物地理学理论有了改进和严格的实验检验;庇所学说产生了新的模型。最后就我国如何发展生物地理学提出了对策措施。     

A cladistic analysis of Geranium subgen. Erodioidea (Picard) Yeo (Geraniaceae)

Subgenus Erodioidea , comprising 19 species, is diagnosed exclusively by the type of fruit discharge and associated morphological characters, all of which are of widespread occurrence within the Geraniaceae. We have no evidence to suggest that the three included sections ( Erodioidea, Aculeolata and Subacaulia) form a monophyletic group. Cladistic analysis of a data set containing 30 morphological characters has confirmed our doubts of monophyly of the subgenus by placing part of the outgroup within the ingroup. Subsequent analyses of the two included non-monotypic sections, Erodioidea and Subacaulia , give different results. For both sections, the monophyly assumption is reasonably well-supported by characters. However, while analysis of sect. Erodioidea results in an explicit hypothesis of relationships and a fully resolved cladogram, resolution within sect. Subacaulia is low. For analysis of the latter, seven different outgroups were used and, in each one, the successive approximations weighting procedure (available in the program Hennig 86) was followed to improve resolution. Despite this, lower nodes in the cladogram remained unresolved, and strict consensus trees of all the analyses resulted in only a few replicated subterminal clades. These results are discussed in connection with biogeographical data and with the hypothesis that representatives of sect. Subacaulia are schizoendemics.     

A classification of the genus Nothofagus (Fagaceae)

PHILIPSON, W. R. & PHILIPSON, M. N., 1988. A classification of the genus Nothofagus (Fagaceae). The genus Nothofagus is subdivided into two subgenera, two sections and three subsections, employing characters of the pollen, cupule and vernation, together with the incidence of leaf-fall. The subdivision into subgenera also agrees with present geographical distribution and with characters of the secondary xylem. One subgeneric and one subsectional name are new. Reasons are given for departures from previous classifications.     

A reassessment of the systematics and a proposal for the phylogeny of some cosmopolitan Lineus species (Nemertea)

Morphological, behavioural and biochemical characters of 9 cosmopolitan, benthic species of the nemertean genus Lineus are used both to clarify their taxonomy and to discuss their phylogenetic relationships. Data analysis shows that all fissiparous species of Lineus collected in the world seas up to date can be placed in a single species, L. sanguineus, with three recognisable subspecies, L. s. sanguineus, L. s. nigricans and L. s. pseudolacteus. These taxa were originally described as separate species mainly according to their geographic origin under the names L. sanguineus (shores of European seas), L. socialis (Atlantic North American shores), L. vegetus (Pacific North American shores), L. pseudolacteus (shores of the English Channel) and L. nigricans (Mediterranean coasts of Italy and France). Examination of the character value matrix suggests a phylogenetic tree developing from two ancestral branches. The first branch includes the two related species L. ruber and L. viridis, the second branch the three species L. longissimus, L. lacteus and L. sanguineus. This approach to the taxonomic and phylogenetic relationships of Lineus nemertean species is in agreement with the intra- and interspecies histocompatibility data in nemerteans: (i) grafts transplanted from donors to recipients of the same species succeed and grafts transplanted from donors to recipients of different species fail; (ii) grafts are rejected more rapidly when the donor and recipient species diverged earlier in evolution and, a contrario, grafts are accepted better when the donor and recipient species have been more recently isolated.     

历史生物地理学的进展

近年来历史生物地理学的进展主要是隔离分化学派的进展。对隔离分化学派的几个分支学派,特别是分支生物地理学和泛生物地理学在理论和方法方面的进展作了简要回顾和介绍。最近十年来分子手段广泛应用于历史生物地理学研究的各个方面,尤其是谱系生物地理学的快速崛起是历史生物地理学的一个明显特征。对本学科的发展做了初步的展望。     

Parsimony analysis of endemicity as a panbiogeographical tool: an analysis of Caribbean plant taxa

To demonstrate that parsimony analysis of endemicity (PAE) can be a method implementing the panbiogeographic approach, we analyzed two data matrices of 40/38 biogeographic provinces × 148 plant species from the Caribbean subregion of the Neotropical region, one where taxa are represented by individual tracks and the other where taxa are represented by single sample localities. We obtained six generalized tracks resulted from the PAE of the areas × individual tracks matrix, and one generalized track from the PAE of the areas × single sample localities matrix, with the latter nested within the former tracks. The results obtained show that PAE works as a panbiogeographical tool if it is based on an areas × individual tracks matrix. When performed in this way, PAE retrieves spatial information that is lost when it is based on an areas × single sample localities matrix, raising doubts regarding the conclusions derived from this latter type of analysis. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 101 , 961–976.     

Two decades of interaction between the MacArthur-Wilson model and the complexities of mammalian distributions

More than two decades after its publication, MacArthur and Wilson's equilibrium model of insular biogeography continues to provide the conceptual foundation for investigating the distribution of species on islands and the composition of insular biotas. During this period, studies of the distributions of mammals among insular habitats have tested, modified, and extended MacArthur and Wilson's simple formalism to enhance greatly our understanding of the complexities of biogeographic patterns and processes. The papers in this symposium summarize many of the past contributions of mammalian biogeographers and introduce important new data and ideas. The diversity of biological characteristics and associated distributional patterns exhibited by mammals has facilitated this endeavour. Some insular mammalian faunas appear to represent approximate equilibria between opposing rates of contemporary colonization and extinction. Other faunas are currently decreasing in diversity because of extinctions, owing either to natural habitat fragmentation that has occurred since the Pleistocene or to human activities within the last few centuries. Still other faunas have been increasing in diversity (at least until recent human impacts) because limiting rates of origination, both colonization and speciation, have been extremely low. The questions and analyses of island biogeography can also be applied to continents with comparable overall results: the distributions of continental faunas reflect the consequences of similar processes of colonization, speciation and extinction. Analyses of insular distributions show unequivocally that probabilities of extinction, colonization and speciation are highly deterministic and vary in predictable ways among different taxa and archipelagos. These findings have important implications for applying the theory and data of insular biogeography to the pressing practical problems of designing natural reserves to preserve native species.     

沙蜥属Phrynocephalus生物地理学研究进展

沙蜥属Phrynocephalus作为鬣蜥科Agamidae中的古北界类群,分布区复杂的地质、地理历史对该属物种形成、分化及分布格局的形成具有重要的影响.近年来,随着生物地理学理论的不断发展,各国学者从不同角度对沙蜥属的生物地理学做了大量研究.本文主要综述了这方面的研究进展;同时基于沙蜥属的研究现状对今后的研究做出展望.     

Latitudinal and altitudinal diversity patterns and Rapoport effects in north-west European land snails and their causes

The latitudinal and altitudinal range sizes of north-west European land-snail species increase with increasing latitude/altitude. These Rapoport effects are not caused by northern/high-altitude species with wider latitudinal/altitudinal ranges and southern/low-altitude species with narrower latitudinal/altitudinal ranges, as predicted by the climatic variability hypothesis. They are instead caused mainly by different northern/upper borders of species occurring in the south part of the study area or at low and intermediate altitudes, respectively. This pattern indicates that the observed Rapoport effects are the result mainly of differential northward/upward expansion of species that were restricted to southern/low or intermediate altitude refugia during the glacials. Although all species occurring in a refugium experienced the same climatic conditions, there is stochastic variation in their climatic tolerance. Species with broader climatic tolerance were able to expand farer northwards/upwards postglacial. The altitudinal distribution of species richness in the analysed alpine faunas cannot be explained by the Rapoport-rescue hypothesis, because species richness peaks at intermediate altitudes and because there is no negative correlation between the number of range borders and altitude. The Rapoport-rescue hypothesis alone is probably also insufficient to explain the decrease in species richness with increasing latitude.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 87 , 309–323.     

大数据时代土壤微生物地理学研究综述

土壤蕴含极为丰富的微生物多样性,它们在物质分解、元素生物地球化学循环、植物生产力和生物健康中扮演着关键角色。理解土壤微生物的生物地理分布格局、形成机制与群落构建规则,有助于预测在全球变化背景下土壤微生物组的功能演变及其对陆地生态系统的调控影响。自21世纪以来,土壤微生物生物地理学在各种大型国际微生物计划的推动下逐步形成了分子生物学技术耦合大数据分析的模式,实现了多种尺度上的关联研究。阐述了土壤微生物在分布格局和群落构建规则方面的研究进展,重点介绍了分子生物学技术和大数据分析在土壤微生物生物地理研究中的应用,对土壤微生物生物地理学未来在微生物分类分辨率、模型验证与构建和功能基因地理学的发展方向进行了展望。     

Island evolutionary biogeography: analysis of the weevils (Coleoptera: Curculionidae) of the Falkland Islands (Islas Malvinas)

Aim I analysed distributional and phylogenetic information on weevils (Coleoptera: Curculionidae) from the Falklands, and integrated it with molecular, palaeontological and geological information to infer a geobiotic scenario. Location Falkland Islands (Islas Malvinas). Methods The panbiogeographical analysis was based on data on 23 Falkland species and their related taxa from southern South America. For the cladistic biogeographical analysis I analysed six weevil taxa for which phylogenetic hypotheses are available (the generic groups Cylydrorhinus, Strangaliodes and Falklandius, and the genera Antarctobius, Germainiellus and Puranius). Results from this analysis were compared with previous regionalizations. Cenocrons (sets of taxa that share the same biogeographical history) were identified by considering temporal information provided by fossils and molecular clocks. Finally, a geobiotic scenario was proposed by integrating the available information. Results Six generalized tracks were detected: Maule–Valdivian forests, Magellanic forest, Magellanic moorland, Falkland Islands, Magellanic forest–Magellanic moorland, and Magellanic forest–Falkland Islands. A node was identified in the Magellanic forest, based on the overlap of two generalized tracks. A single general area cladogram was obtained, implying the following sequence: (Magellanic moorland (Maule–Valdivian forests (Magellanic forest, Falkland Islands))). The Falklands are classified here as a biogeographical province in the Austral realm, Andean region and Subantarctic subregion. Falkland weevils seem to belong to a single Subantarctic cenocron. The sequence of events deduced implies the following steps: development of the Subantarctic biota in southern South America, arrival of the Falkland crustal block from South Africa in the Early Cretaceous, geodispersal of the Subantarctic cenocron from southern South America to the Falklands during the Early Oligocene, vicariance of the Magellanic moorland, vicariance of the Maule–Valdivian forests, and final vicariance between the Magellanic forest and the Falkland Islands. Main conclusions The biotic components identified support the connection of the Falkland weevils with the Magellanic forest. Falkland weevils belong to a single cenocron, dated to at least the Early Oligocene, when geodispersal from southern South America may have occurred. An older African cenocron may have been replaced completely by the Subantarctic one when the proto‐Falklands made contact with the Patagonian continental shelf. A geobiotic scenario implying vicariance events related to sea‐level variations could explain the distributional patterns analysed herein.     

Panbiogeographical analysis of the shark genus Rhizoprionodon (Chondrichthyes,Carcharhiniformes, Carcharhinidae)

The distributional patterns of the seven species of Rhizoprionodon were analysed using the panbiogeographical method of track analysis. The individual tracks of Rhizoprionodon suggest that the genus is mainly an Indian–Atlantic Ocean group. Five generalized tracks were found: (1) Caribbean, defined by R. porosus and R. terraenovae; (2) eastern coast of South America, defined by R. porosus and R. lalandei; (3) Indian Ocean, defined by R. acutus and R. oligolinx; (4) north‐western Australia, defined by R. acutus, R. oligolinx and R. taylori; (5) north‐north‐eastern Australia, defined by R. acutus and R. taylori. Only R. longurio was not included in any generalized track, and its distribution is restricted to the eastern Pacific Ocean. Two biogeographical nodes were found at the intersection of the generalized tracks 1 and 2 (Caribbean Sea) and generalized tracks 4 and 5 (north Australia). The generalized tracks overlap with those found in several unrelated marine taxa. Overall, the generalized tracks are associated with warm currents. The biogeographical nodes found (Caribbean and Australian) are coincident with the global distribution of mangroves.     

Distribution patterns of interstitial freshwater meiofauna over a range of spatial scales,with emphasis on alluvial river-aquifer systems

Spatial distribution patterns of the interstitial meiobenthos are examined across a range of scales. A global interstitial highway model is presented with the alluvial aquifer system as its central core. Spatially discontinuous hypogean entities, such as karstic aquifers, springs, anchialine waters and the psammolittoral, have limited interconnections except through the alluvial aquifer system and are contiguous with epigean waters. The global interstitial highway is viewed as an evolutionary pathway and long-term dispersal route for meiobenthic forms. The distribution of interstitial animals in alluvial river-aquifer systems is examined at longitudinal (altitudinal), reach, floodplain, gravel bar, and vertical (depth) scales. Geomorphic and hydrogeologic features and interactions emerge as major determinants of the spatially heterogeneous nature of alluvial aquifers that structure the patchy distribution patterns of hypogean fauna across a range of scales.Invited summary of Symposium on the Biogeography of Subterranean Crustaceans: the Effects of Different Scales. Prepared for print by D. C. Culver.Invited summary of Symposium on the Biogeography of Subterranean Crustaceans: the Effects of Different Scales. Prepared for print by D. C. Culver.     

Latitudinal‐diversity gradients can be shaped by biotic processes: new insights from an eco‐evolutionary model

The processes involved in shaping latitudinal‐diversity gradients (LDGs) have been a longstanding source of debate and research. Climatic, historical and evolutionary factors have all been shown to contribute to the formation of LDGs. However, meta‐analyses have shown that different clades have LDG slopes that may vary in more than one order of magnitude. Such large variation cannot be explained solely by climatic or historical factors (e.g. difference in surface area between temperate and tropical zones) given that all clades within a geographic region are subject to the same conditions. Therefore, biotic processes intrinsic to each taxonomic group could be relevant in explaining rate differences in diversity decline across latitudinal gradients among groups. In this study, we developed a model simulating multiple competing species subjected (or not) to a demographic Allee effect. We simulated the range expansion of these species across an environmental gradient to show how these two overlooked factors (competition and Allee effects) are capable of modulating LDGs. Allee effects resulted in a steeper LDG given a higher probability of local extinction and lower colonization capacity compared to species without Allee effects. Likewise, stronger competition also led to a steeper decline in species diversity compared to scenarios with weaker species antagonistic interactions. This pattern occurred mostly due to the strength of priority effects, wherein scenarios with strong competition, species that dispersed earlier in the landscape were able to secure many patches whereas late‐arriving species were progressively precluded from expanding their ranges. Overall, our results suggest that the effect of biotic processes in shaping macroecological patterns could be more important than it is currently appreciated.     

Genetic variation and taxonomic analysis of the subgenus Profundulus

The current taxonomy within the subgenus Profundulus was reviewed and at least five different species were recognized on the basis of unique genetic characters. Two of them are considered to be new species not yet described: one is known only from a single spring in the Tehuantepec basin (Mexico); the second extends mainly through springs in the Mixteca region of Mexico. The maximum Nei distances were found between P. oaxacae and the rest of the species belonging to this subgenus. Compared with the other Profundulus species, the new species from Mixteca also had high Nei values, which suggest separation of these species probably during the Miocene period. Therefore, the previously postulated old Central American origin of Profundulus is supported by our data. The mountain uplift that gave rise to the current division of Pacific and Atlantic rivers may be the reason for the current distribution pattern of the subgenus Profundulus . The sporadic presence of this subgenus in the headwaters of some Atlantic rivers has been interpreted as the result of fluvial captures during the Pleistocene period.     

Pattern and process in the biogeography of subterranean amphipods

The comparative data from studies of two ‘superfamily’ groups with large numbers of subterranean taxa, the exclusively freshwater Crangonyctoidea and the predominately marine Hadzioidea, support the hypothesis that distributional patterns and evolutionary processes of stygobiont amphipods are closely linked and that the former can be a useful indicator of the latter. Three major biogeographic patterns are indicated by the distribution of subterranean species in these groups, each apparently reflecting a particular mode of origin: (1) freshwater stygobionts (limnostygobionts) derived from epigean freshwater ancestors through colonizations probably influenced by adaptive shifts, or assisted by stream capture and spring failure; (2) freshwater stygobionts derived from marine/brackish water ancestors by stranding during regression of marine embayments; and (3) marine/brackish water stygobionts (thalassostygobionts) derived from epigean marine/brackish water ancestors through adaptive shifts possibly in concert with fluctuating sea levels.     

The phylogenetic position of the extinct Cuban Macaw Ara tricolor based on complete mitochondrial genome sequences

The Cuban Macaw Ara tricolor was a species of macaw native to Cuba and Isla de la Juventud in the Caribbean that became extinct in the 1860s. Morphologically, it was similar to, but distinctively smaller than, the large red macaws – Scarlet Macaw Ara macao and Red‐and‐green Macaw Ara chloropterus. A close affinity with the Scarlet Macaw has been suggested based on plumage similarities. In this study we use complete mitochondrial genome sequences to examine the phylogenetic position of the Cuban Macaw. Our results do not indicate a sister‐species relationship with the Scarlet Macaw but place the Cuban Macaw as sister to the two red species and the two large green macaws, the Military Macaw Ara militaris and the Great Green Macaw Ara ambiguus. Divergence estimates suggests that the Cuban Macaw separated from this group approximately 4 million years ago.     

Crocodilus affuvelensis Matheron, 1869 from the Late Cretaceous of southern France: a reassessment

Hitherto unpublished crocodylian remains, including four skull fragments, from the lignite-bearing localities of Valdonne and Fuveau (Santonian–Campanian), south-eastern France, are described. They complement the original material of ' Crocodilus affuvelensis ' described by Matheron (1869) and Repelin (1930). Based on overlapping specimens, available elements of the rostrum, the palate, the skull table, the mandible and the pterygoid can be shown to belong to a single taxon, for which a reconstruction is proposed. Designation of a neotype has been proposed to the ICZN committee. A new genus, Massaliasuchus , is proposed here to designate the crocodylian originally described as Crocodilus affuvelensis . This crocodylian presents affinities with basal alligatoroids and complements the picture of crocodylian diversity during the Late Cretaceous in the European archipelago. Massaliasuchus affuvelensis is compared with other European taxa and with basal alligatoroids from North America. The putative basal position of Massaliasuchus as well as its early geological age suggest that the geographical origin of the Alligatoroidea is still uncertain.  © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society , 2008, 152 , 567–580.     

New Zealand Lepidoptera: Basic biogeography

Abstract

The composition of the New Zealand Lepidoptera fauna is briefly described, and affinities within Tortricidae analysed. Sixty-five genera are used to indicate four possible sets of relationships, but shortcomings of taxonomic interpretations are outlined. Except for species with a wide dispersal range (some 6% of the fauna) most show affinities consonant with terrane biogeography. The panbiogeographic methodology is a potent tool in systematics, giving direction to the research effort.