Molecular phylogeny and diversification history of Prosopis (Fabaceae: Mimosoideae)

The genus Prosopis is an important member of arid and semiarid environments around the world. To study Prosopis diversification and evolution, a combined approach including molecular phylogeny, molecular dating, and character optimization analysis was applied. Phylogenetic relationships were inferred from five different molecular markers ( mat K- trn K, trn L- trn F, trn S- psb C, G3pdh, NIA). Taxon sampling involved a total of 30 Prosopis species that represented all Sections and Series and the complete geographical range of the genus. The results suggest that Prosopis is not a natural group. Molecular dating analysis indicates that the divergence between Section Strombocarpa and Section Algarobia plus Section Monilicarpa occurred in the Oligocene, contrasting with a much recent diversification (Late Miocene) within each of these groups. The diversification of the group formed by species of Series Chilenses, Pallidae, and Ruscifoliae is inferred to have started in the Pliocene, showing a high diversification rate. The moment of diversification within the major lineages of American species of Prosopis is coincident with the spreading of arid areas in the Americas, suggesting a climatic control for diversification of the group. Optimization of habitat parameters suggests an ancient occupation of arid environments by Prosopis species.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 621–640.     

中国锦鸡儿属的分子系统发育

测定了中国锦鸡儿属Caragana各属下分类群20个代表种的ITS、trnL-F和trnS-G序列.基于3种DNA片段的单独分析所获得的系统发育树具有相似的拓扑结构;3种片段的合并分析提高了各分支的支持度,并获得了相似的系统发育树.落轴亚属subgen.Caragana的种类构成了一个在系统树上首先分化出来的单系分支,与形态特征和地理分布的研究一致.短齿系ser. Occidentales和长齿系ser. Bracteolatae的代表种构成了1个单独的分支,因此短齿系应被放入长齿系所属刺叶组sect.Longspina 而不是针刺组sect.Spinosae或sect.Pruinosa.分子系统学证据支持依据叶片宽窄在掌叶组sect.Frutescentes中再划分2个系的形态学研究结论;但Ser.Dasyphyllae和针刺系ser.Spinosae的亲缘关系较近,系统发育分析的结果似乎不支持在针刺组中单独划分2个系.宿轴类的物种聚成一个单系的分支,因此应被处理为一个组--鬼箭组sect.Jubatae;荚果里面被毛和无毛的种类各自构成2个小支,支持依据该特征在组下分系.系统树显示Sanczir定义的sect.Tragacanthoides然为多系类群,应将该组中所包含的刺叶组、针刺组、和鬼箭组的种类划分出来.基于ITS的遗传距离表明卷叶锦鸡儿C. ordosica与藏锦鸡儿C, tibetica应该是2个不同的种.     

Taxonomy and phylogeny of the tribePlucheeae (Asteraceae)

The tribePlucheeae (Benth.)A. Anderb., has been analysed cladistically by means of a computerized parsimony program (Hennig 86), using theArctotideae as outgroup. The results of the analysis are presented in a consensus tree and one cladogram. Four major monophyletic subgroups can be recognized: TheColeocoma group (3 genera), thePterocaulon group (3 genera), theLaggera group (6 genera), and thePluchea group (12 genera). All recognized genera are described and most genera are supplied with taxonomical notes including comments on their taxonomic status. Genera such asBlumea, Pluchea, andEpaltes are demonstrated to be unnatural assemblages.Monarrhenus andTessaria are both closely related to thePluchea complex. The old generic nameLitogyne Harv. has been taken up for one species ofEpaltes, the genusRhodogeron is reduced to a synonym ofSachsia, and the following new combinations are made;Litogyne gariepina (DC.)A. Anderb., andSachsia coronopifolia (Griseb.)A. Anderb.     

Taxonomy, phylogeny and biogeography of Kickxia and Nanorrhinum (Scrophulariaceae)

Phylogenetic studies in Kickxia sensu lato, using morphological characters, show that two groups of species appear as distinct clades, one corresponding to sect. Kickxia and the other corresponding to sect. Valvatae. The differences between the two sections are of the same magnitude as those used to separate other closely related genera in the tribe. Therefore, the treatment of sect. Valvatae as a separate genus, Nanorrhinum , is proposed. Results from a dispersal-vicariance analysis indicate that the area of origin for Nanorrhinum is Arabia, whereas for Kickxia sensu stricto it is either Macaronesia, the Mediterranean Region or both these areas combined. The taxonomy of Nanorrhinum is revised in detail, whereas for Kickxia a synoptical treatment is given, mainly based on previous literature. The results indicate that the plasticity of the species of Nanorrhinum , as well as the variation within populations in the field, is often much greater than previously thought, and that, therefore, far too many species have been described. In the present study ten species are recognized in Nanorrhinum. New combinations are N. azraqensis, N. stenanthum, N. hastatum, N. elegans, N. kuriensis, N. asparagoides, N. heterophyllum and N. woodii. Three lectotypes are selected. Keys to all taxa are given, and new information on chromosome numbers and sexual systems are provided for several species.     

Chloroplast DNA characters, phylogeny, and classification of Lathyrus (Fabaceae)

Mapped cpDNA restriction site characters were analyzed cladistically and the resulting phylogenetic hypotheses were used to test monophyly and relationships of the infrageneric classification of Lathyrus (Fabaceae) proposed by Kupicha (1983, Notes from the Royal Botanic Garden Edinburgh 41: 209-244). The validity of previously proposed classification systems and questions presented by these classification schemes were explored. Two cpDNA regions, rpoC (rpoC1, its intron, part of rpoC2, and their intergenic spacer) and IR- (psbA, trnH-GUG, part of ndhF, and their intergenic spacers), were analyzed for 42 Lathyrus and two Vicia species. PCR (polymerase chain reaction) amplified rpoC and IR- products digested with 31 and 27 restriction endonucleases, respectively, resulted in 109 potentially informative characters. The strict consensus tree suggests that several of Kupicha's sections may be combined in order to constitute clades. The widespread section Orobus and the South American section Notolathyrus should be combined. Section Lathyrus, characterized by a twisted style, should either include sections Orobon and Orobastrum or be redefined as three sections, one of which is characterized by a 100 base pair deletion in the IR- region. Finally, a weighted parsimony analysis positions sections Clymenum (excluding L. gloeospermus) and Nissolia, both with phyllodic leaves, as sister sections. The affiliation of Lathyrus gloeospermus (section Clymenum) remains problematic.     

Taxonomy and phylogeny of the Hister servus group (Coleoptera: Histeridae): a Neotropical radiation

The Hister servus group contains ten species and two species complexes. Although the group’s diversity is centred in Mexico and Central America, one lineage, comprising H. indistinctus Say, H. defectus LeConte and H. fungicola Schaeffer, has probably diversified entirely in the south-eastern U.S. The servus group also contains the following species: H. servus Erichson , H. nodatus lewis , H. doyeni sp.n., H. lagoi sp.n., H. bullatus lewis , H. coronatus Marseul and H. diadema Marseul and two diverse species complexes, dubbed the comes complex and the montivagus complex. These two complexes require additional sampling and study before species within them can be recognized. They are, however, closely related to each other and appear to be paraphyletic with respect to a clade comprising H. bullatus, H. coronatus and H. diadema. A prior hypothesis that the servus group includes H. sallei, H. matador sp.n. and the species of Hister (Spilodiscus) is not well supported. Several sister groups within the servus group show geographical disjunction between seasonal tropical habitats of western North America and wetter montane habitats of the eastern parts of the continent along the Gulf and Caribbean coasts.     

Taxonomy and phylogeny of theParanourosorex lineage,Neogene of Eurasia (Mammalia: Soricidae: Anourosoricini)

Paranourosorex remains from 14 Miocene and Pliocene localities in Inner Mongolia (China) and SW Siberia (Russia, Kazakhstan) are referred to a detailed biochronological sequence. The fossils are considered to represent a single evolutionary lineage which ranges in time from late middle Turolian (MN 12) through late early Ruscinian (MN 14). The lineage is subdivided into 5 species, including the previously describedP. gigas Rzebik-Kowalska 1975 from Poland.Neomys inexspectatus Schlosser 1924 is assigned toParanourosorex, andP. seletiensis n.sp. is described as new. All taxa are diagnosed. Evolutionary changes within theParanourosorex lineage over a period of about 1.5 my are discussed. Intratribal comparisons suggest 3 anourosoricine clades during the Mio/Pliocene of Eurasia, consisting of 1)Crusafontina, 2) Paranourosorex, and 3)Anourosorex andAmblycoptus.     

Taxonomy and phylogeny of a new Central American beetle genus: Catrachia (Coleoptera: Scarabaeidae)

A new genus and two species of Melolonthinae from Honduras and Nicaragua are described. A phylogenetic analysis, carried out using morphological characters, suggests that Catrachia is a strongly supported monophyletic group. Catrachia is therefore established as a new genus, constituted by two new species, Catrachia mariana and Catrachia nica.     

Species, genomes, and section relationships in the genus Arachis (Fabaceae): a molecular phylogeny

The economically important genus Arachis (Fabaceae) comprises 80 species restricted to South America. One monograph on the genus divided it into nine sections and included an intuitive assessment of evolutionary relationships. There is no comprehensive phylogenetic study of the genus. To test the current systematic treatment of the genus, we reconstructed a phylogeny for Arachis using nuclear ITS and plastid trnT–trnF sequences from 46 species representing all nine sections. ITS cloning of the allotetraploid species of section Arachis indicated the presence of A and B genome alleles and chimeric sequences. Our study revealed that species from section Extranervosae were the first emerging lineage in the genus, followed by sections Triseminatae and Caulorrhizae, and two terminal major lineages, which we refer to as erectoides and arachis. The lineage erectoides comprises members of sections Erectoides, Heteranthae, Procumbentes, Rhizomatosae, and Trierectoides. Species in the arachis lineage form two major clades, arachis I (B and D genomes species and the aneuploids) and arachis II (A genome species). Our results substantiated the sectional treatment of Caulorrhizae, Extranervosae, and Triseminatae, but demonstrated that sections Erectoides, Procumbentes, and Trierectoides are not monophyletic. A detailed study of the genus Arachis with denser taxon sampling, additional genomic regions, plus information from morphology and cytogenetics is needed for comprehensive assessment of its systematics.     

Taxonomy and molecular phylogeny of the Asian Paraleucophenga Hendel (Diptera,Drosophilidae)

This paper reports on nine Asian species of the genus Paraleucophenga, of which four are new to science: Paraleucophenga brevipenis sp. nov. , Paraleucophenga hirtipenis sp. nov. , Paraleucophenga longiseta sp. nov. , and Paraleucophenga tanydactylia sp. nov. We also report on a new synonym, Paraleucophenga shanyinensis Chen & Toda, 1994 syn. nov. A key to all of the species examined, based on morphological data, is provided, together with a ‘molecular’ key to seven Paraleudophenga species based on DNA sequence data of the mitochondrial NADH dehydrogenase subunit 2 (ND2) gene. The phylogenetic relationships among seven Paraleucophenga species are reconstructed based on DNA sequences of the mitochondrial ND2 gene, using two Leucophenga species as outgroups. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 615–629.     

Taxonomy and preliminary phylogeny of the parasitic genus Apocephalus, subgenus Mesophora (Diptera: Phoridae)

Abstract. The species of Apocephalus , subgenus Mesophora , are revised and twenty-eight species are recognized, including the following twenty-two new to science: from the Nearctic Region A. brunnipes, A. gemursus, A. pristinus, A. setialvus and A. unitarsus , and from the Neotropical Region A. absentis, A. adustus, A. anfractus, A. angustistylus, A. bisetus, A. brevicercus, A. curtus, A. gracilis, A. hansoni, A. leptotarsus, A. longistylus, A. micrepelis, A. moraviensis, A. prolatus, A. trisetus, A. tritarsus and A. truncaticercus. Additionally, three species known only from female specimens are described but not formally named. A lectotype is designated for A. mortifer Borgmeier, and immature stages of A. borealis, A. antennatus and A. mortifer are described. Unlike larvae of other Apocephalus species, all of which are parasites of ants (Hymenoptera: Formicidae), those of Mesophora species are parasites of various other hosts.     

Unravelling the phylogeny of tetraploid Vicia amoena (Fabaceae) and its diploid relatives using chromosomal landmarks

The chromosomal sites of 5S and 45S rDNA genes were revealed by fluorescence in situ hybridisation, and used as landmarks to resolve the ambiguous taxonomic status of the tetraploid Vicia amoena var. amoena (Fabaceae). Comparisons of the number and location of rDNA loci in V. amoena var. sericea, V. pseudorobus, V. dumetorum, V. pisiformis and V. cracca confirmed that V. amoena var sericea, or a closely related diploid, was a likely progenitor of the tetraploid. However, the tetraploid contains chromosomes bearing rDNA loci which are probably derived from another species, such as V. pseudorobus, suggesting that it is an allotetraploid and the product of an interspecific hybridisation event. This was corroborated by fluorescence in situ hybridisation with genomic DNA from V. amoena var sericea, which not only showed that the tetraploid contains more than one chromosome set, but also that its constituent sets have undergone considerable reorganisation.