KATABLEPHARIS OVALIS,A COLORLESS FLAGELLATE WITH INTERESTING CYTOLOGICAL CHARACTERISTICS1

Katablepharis ovalis Skuja, isolated from an impoundment in Colorado, has a cell covering composed of two layers over the cell body and flagella. The outer component of the cell covering contains 25-nm-diameter hexagonal scales arranged in rows. The inner component of the cell covering is composed of a layer of interwoven microfibrils. The inner component of the cell covering is joined to the plasma membrane by one or more attachment strips that always occur outside, and along, one of the microtubular groups of the outer array. The attachment strips resemble hemidesmosomes and are composed of rows of electron-dense material, 12 nm apart, that protrude through the plasma membrane into the extracellular space, to attach to the inner wall. The two flagella are inserted subapically into a raised area of the cell. The flagella do not have any fibrillar or tubular hairs and are covered only by the two-layered cell covering. The cell has an inner and outer array of microtubules, both of which are spindle-shaped, arising at the anterior end of the cell and continuing into the posterior end of the cell. A single large Golgi apparatus occurs in the anterior cytoplasm. The nucleus is in the center of the cell. Two rows of large ejectisomes occur posterior to the area of flagellar attachment. Smaller ejectisomes occur under the plasma membrane in the posterior and medial areas of the cell. Each ejectisome is composed of a single body containing a spirally wound, tapered ribbon. On discharge, the ejectisome ribbon rolls inward, creating a tubular structure. The possible relationship between Katablepharis, the green algae, and the cryptophytes is discussed.     

Formation and function of the “Xestoleberis‐spot” in Xestoleberis hanaii (Crustacea: Ostracoda)

The crescent sculpture of the so‐called “Xestoleberis‐spot” develops inside the calcified valve of the family Xestoleberididae. Electron microscopic observations on both, intermoult and postmoult stages of Xestoleberis species reveal that the “Xestoleberis‐spot” system consists of three elements; two calcified chambers, a vesicle of electron‐dense material and an uncalcified procuticle. The formation and function of the “Xestoleberis‐spot” system are discussed. In conclusion, the “Xestoleberis‐spot” system functions as the muscle attachment site for several antennal muscles, and provides the material for chitinous fibers in the exocuticle of outer lamella. The unique cuticular structures of the family Xestoleberididae are due to the “Xestoleberis‐spot” system.     

Genomic analyses of a “living fossil”: The endangered dove‐tree

Davidia involucrata Baill, also known as the dove‐tree, is a living fossil and an endangered species currently restricted to the mountains of southwestern and central China. It has a beautiful and innovative trait of high horticultural value: two white bracts covering the flower caputila. Here, we report on the chromosome‐scale genome of this species using single‐molecule real‐time long reads and chromosome conformation capture (Hi‐C) techniques. This species has a larger genome size of 1,169 Mb and contains relatively more genes (42,554) than the closely related species Camptotheca acuminata (397 Mb and 31,825 genes). Both species shared one recent whole genome duplication before their divergence. The expansion of the repetitive elements after their divergence contributed greatly to the increase in the genome size of the dove‐tree. Photosynthesis‐related genes were almost absent or showed reduced expression in the bracts of the dove‐tree, while defence‐ and chemical‐related genes increased greatly, highlighting the important roles of the bracts in protecting flowers and attracting pollinators. The effective population size of the dove‐tree continuously decreased during the climate changes of the Quaternary. Such climate sensitivity should be fully considered in conservation efforts for this relict endangered species in the context of continuous climate warming in the future.     

Paleodemography: “Not quite dead”

As Kim Hill¹ recently noted in Evolutionary Anthropology, humans are unique among the hominoids with regard to the length of their lives, as well as other elements in the individual life histories. The evolutionary details that modified a basic pongid life history into a hominid one remain obscure, but aspects of recent human demographic history are assailable. Study of the last 10,000 years or so is an important part of ongoing anthropological discourse, for demographic changes may be intimately linked to such major developments as agriculture and urbanization.^2-8 Whether demographic changes are antecedents for or consequences of these major developments is a matter of great contention, but at the least we should attempt to document the nature of human demographic changes in the recent past. Although this documentation can take different forms, the principal sources are archeological information on past settlement patterns and analyses of prehistoric human skeletal material.     

A stable, “near-haploid” mammalian cell line (Dipodomys ordii)

An established SV40-transformed cell line of Dipodomys ordii was cloned for selective loss of chromosomal material. A clone is described which has a modal chromosome number of 50 (in the normal diploid 2n=72), and has about 66% of the DNA content of normal diploid cells. Karyotype analysis shows that, although some chromosome rearrangement has taken place, 23 chromosomes are completely unpaired and 7 chromosomes are partially unpaired. Buoyant density analysis in neutral CsCl and Cs₂SO₄+Ag gradients of the DNA of this clone shows that there has been no selective retention or loss of any of the satellite DNA components present in D. ordii during the elimination of 34% of the genetic material.     

The Fine Structure of Four “Species” of Amoeba*

The fine structure of Amoeba discoides, Amoeba dubia, and Amoeba amazonas was studied and compared with that of Amoeba proteus. The different kinds of amebas showed general similarities but differed in the ultrastructural details of their organelles. With respect to fine structure, A. discoides was indistinguishable from A. proteus, while both A. dubia and A. amazonas had distinctive features. The nuclei of all had a prominent honeycomb-like fibrous lamina, but A. dubia differed from the others in the distribution of nucleoli within the nucleus. The mitochondria of A. amazonas were unusual in having a variable pattern of cristae, some being plate-like and others tubular. Golgi bodies in A. amazonas had a greater proportion of vesicles and a smaller number of cisternae than those of the others, while Golgi bodies in A. dubia had highly flattened cisternae without a lining of filamentous material such as is found in the other types. The plasma membrane of A. dubia also lacked the prominent filamentous cell coat common to A. proteus and other amebas. The relation between the Golgi apparatus and the cell coat and the significance of the degree of development of the cell coat for pinocytosis and other phenomena is considered. The experimental use of these cells, including the formation of hybrids by nuclear transplantation is discussed.     

Application of “Streamlined” Material Input per Service Unit Concept to Small Residential Districts in China

This article reports a new application of material and energy accounting techniques to characterize and quantify the relationships between material input (and the related energy flows and emissions) and the services provided (i.e., material input per service unit [MIPS]) at the neighborhood level. The case study focuses on China's small residential district (SRD). It is concluded that linking a service (in this case, residential function) enabled by a given product (neighborhood development) to the amount of materials, energy, and emissions used or produced in creating that product offers a potential way to reduce the environmental impact of that service through more efficient use of materials, enlarged service scales, and improved buying decisions.     

The Exceptional “Blind” Gut of Appendicularia sicula (Appendicularia, Tunicata)

In this work, we studied for the first time the histology and ultrastructure of the gut of Appendicularia sicula and demonstrated the absence of any trace of anus. Appendicularians are small holoplanktonic tunicates, characterised by very fast ingestion and quick food transfer along their gut. The high production of faecal pellets released in the aqueous environment, associated with a high filtration rate, highlights their important role in marine ecosystems. Due to the absence of an anus, in contrast with other appendicularians, A. sicula, one of the smallest species, accumulates undigested faecal material within its body, with consequent extreme enlargement of its rectum. The gut, the epithelium of which is generally extremely reduced, is formed of an oesophagus, a globular stomach, thin proximal and mid-intestine, and a huge rectum. The latter, when filled with faecal material, may occupy most of the volume of the trunk in fully grown specimens. Although profoundly altered, the gut of these animals does show several similarities to that of Fritillaria (a genus of the same family, Fritillariidae), with which it has in common many features such as specialised mitochondrial pump cells. In A. sicula, the structural simplifications of organs seem to reach their extreme condition in comparison to other appendicularians.     

A Study of Diaphanosoma Species (Crustacea: Cladocera) of the “Mongolianum” Group

Material from 49 localities in Europe, Asia and Africa is used to study two similar Diaphanosoma species, viz. D. mongolianum UENO, 1938, and D. lacustris KORINEK, 1981, both of which were described earlier under other names, the most common of which were “D. brachyurum”, “D. leuchtenbergianum” and “D. birgei lacustris”. These species are redescribed in detail, consideration being given to interpopulational and individual morphological variability, the type material, and material from type localities. The morphology of the setae of the swimming antennae is studied in detail, and the author concludes that some of them are not only used for swimming but also perform a sensory function. Some aspects of the biology of the species are described. They inhabit water bodies of different types, are often so abundant that they constitute the main component of zooplankton communities, and are an important link in the trophic chain. Little known cases of the co-occurrence of Diaphanosoma species in a water body are described. Localities known for D. mongolianum and D. lacustris are situated mainly in the temperate and subtropical zones, the former species penetrating farther north than the latter. However, they are also found in the White Nile (Sudan) and Ethiopian lakes. This southward penetration may be connected with the azonal distribution of fluviatile fauna and with the altitude of Ethiopian lakes.     

Unmown refuge areas and their influence on the survival of grassland birds in the Saône valley (France)

The objective of this study is to assess the attractiveness of refuge areas to the avifauna of the mown prairies in the Val de Saône region, after the disappearance of all cover by mowing. We compared the densities of several species, notably the corncrake, Crex crex, and the common quail, Coturnix corturnix, in three categories of refuge areas of unmown grasslands. Within the 10-m wide strips, covering in total 3–5% of the study area, bird densities at the beginning of August, after the hay-making season, are much higher than the densities recorded in the prairies during haymaking in July. Quail and corncrake densities are always lower, although still higher than the July densities in the prairie, in the fields of some 0.5 ha (covering 6.1% of another study area). In fields of 1 ha or more, the low densities of the two species reveal their poor attractiveness, or the absence of it. When during outside-in mowing some 10-m wide strips in the center of the fields are left uncut before the completion of mowing, or when during inside-out mowing two 5-m wide strips along the field margins are not mown, the contacts between the mowing machine and half of the unfledged young quails, and one-third of the unfledged young corncrakes, can be avoided.     

Genesis and structure of the so-called “balbiani body” or “yolk nucleus” in the oocyte of dugesia dorotocephala (turbellaria,tricladida)

Oogenesis of the fresh-water triclad Dugesia dorotocephala has been studied by electron microscopical methods, with particular regard to the genesis and composition of the so-called “Balbiani body.” Its origin is clearly recognizable in young oocytes where the few mitochondria present seem to gather at the level of the perinuclear ooplasm. Here they surround dense masses of finely granular, fibrillar material probably coming from the nucleus. During the previtelloge ic period, mitochondria rapidly increase in number while the dense masses progressively dissolve. In the vitellogenic oocytes the Balbiani body shows its final configuration: it appears as a large area (up to 15-20 pm in diameter) consisting of innumerable densely packed mitochondria, some smooth vesicles and free ribosomes. This aggregate of cytoplasmic organelles remains unmodified in the mature oocytes. The function of the “Balbiani body” of D. dorotocephala is as yet unclear; it can only be asserted that it is not correlated with yolk production in which the endoplasmic reticulum and the Golgi complex are involved.     

Initiation,calcification, and form of larval “archaeogastropod” shells

The coiled shell of gastropods begins as a cap-shaped lens of organic and calcified material that covers the posterior dorsal side of the larva. During development the cap enlarges to cover the larval visceral mass. Marginal growth then produces the characteristic coiled shell. One model of the initiation of shell coiling in “archaeogastropods” requires that the shell remains flexible and uncalcified until after torsion, and that muscle contraction during torsion deforms the shell. We describe early shell calcification and tested this requirement of the model for the patellogastropod limpets Tectura scutum and Lottia digitalis, the trochids Calliostoma ligatum and Margarites pupillus and the abalone Haliotis kamtschatkana. We determined the stage of initial calcification by staining larvae with the fluorescent calcium marker calcein and observing them with bright field, crossed polarizing filter, and fluorescence microscopy. In T. scutum the earliest observable shell was calcified and calcium was sometimes detected even before the initial shell was visible. Larvae of the other species deposited a noncalcified matrix that was subsequently calcified, and in C. ligatum and M. pupillus this initial calcification was distinctly spotty. Shells of both patellogastropods and the abalone were demonstrably rigid prior to torsion while the shells of the trochids were not. These results suggest that shell coiling in patellogastropods and abalone is not initiated by contraction of the larval retractor muscle during torsion; in trochids this mechanism is possible. However, analysis of camera lucida drawings of pre- and post-torsional shells of T. scutum and C. ligatum did not detect shell shape changes during torsion. J. Morphol. 235:77–89, 1998. © 1998 Wiley-Liss, Inc.     

Rapid detection of “Candidatus Phytoplasma mali” by recombinase polymerase amplification assays

Isothermal recombinase polymerase amplification (RPA) assays for the specific detection of “Candidatus Phytoplasma mali (Ca. P. mali),” the causal agent of apple proliferation, were developed. The assays amplify a fragment of the imp gene and amplimers were detected either by fluorescence in real‐time mode (TwistAmp^®exo assay) using a fluorophore‐labelled probe or by direct visualization employing a lateral flow device (TwistAmp^®nfo assay/Milenia^®HybriDetect). The RPA assays specifically amplified DNA from “Ca. P. mali” strains, and cross‐reactivity with other phytoplasmas or plant DNA was not observed. The limit of detection was determined with a cloned imp standard, and positive results were obtained down to 10 copies with both RPA assay formats. In comparison with a TaqMan real‐time PCR assay based on the same target gene, the RPA assays were equally sensitive, but results were obtained faster. Simplified nucleic acid extraction procedures from plant tissue with Tris‐ and CTAB‐based buffers revealed that crude Tris–DNA extracts were a suitable source for RPA tests while larger concentrations of CTAB were inhibitory. This is the first report of RPA‐based assays for the detection of “Ca. P. mali”. The assays are suitable for high‐throughput screening of plant material and point‐of‐care diagnostic and can be potentially combined with a simplified DNA extraction procedure.     

A demonstration of the effects of substrate screening on the colonisation and decay of cotton textiles in soil burial tests

The screening of a test substrate is a technique which may be employed during soil burial testing of materials (Eggins &Lloyd, 1968). One suggested advantage of such a technique is that only active organisms colonise the material under test. This experiment shows the effects of screening textile samples in soil burial tests, compared with unscreened controls. Two groupes of cotton textile strips were buried in soil and incubated at 25° C. In one group the strips were in direct contact with the soil, in the other group they were screened from direct contact with the soil by a covering of finely woven glass-fibre tape. The strips were removed at intervals for plating-out on agar, and also for tensile testing. Lists of fungal species isolated from the strips were compiled, (Tables 1 and 2) and tensile testing results are shown on the graph. For the purpose of comparing fungal species isolated by this method with those isolated by a less selective technique, an investigation of the soil mycoflora was also made using Warcups' technique. (Table 6).     

“Hypothetical Mean Organisms” of Mycobacteria

Seven hundred fifty-four strains of mycobacteria were examined using 97 characters, and a “Hypothetical Mean Organism” (HMO) was prepared for each species using numerical classification. The species could be defined as a group of strains showing a mean S-value of 90% or more to a HMO and showing mean S-values of 89% or less to other HMOs. The following species were recognized: (1) M. tuberculosis, combining M. tuberculosis and M. bovis into one species; (2) M. kansasii; (3) M. novum; (4) M. avium, combining M. avium, M. nonchromogenicum, M. gastri, M. intracellulare and M. scrofulaceum into one species; (5) M. marinum; (6) M. thermoresistibile; (7) M. chitae; (8) M. borstelense; (9) M. abscessus; (10) M. fortuitum; (11) M. phlei; (12) M. aurum; (13) M. parafortuitum; (14) M. lacticola; (15) M. smegmatis. Dendrogram of the species showed two main stems, indicating that the genus Mycobacterium be divided into two subgenera, subgenus Mycobacterium (from M. tuberculosis to M. chitae) and subgenus My cornycobacterium (from M. borstelense to M. smegmatis). Some discrepancy was noted between the results of numerical classification using HMOs and that of the “proper” numerical classification, and this discrepancy is discussed.     

Better Global Assessment of Worker Inequality: Comment on “The Employment Footprints of Nations”

This commentary responds to the previously published Journal of Industrial Ecology article “The Employment Footprints of Nations: Uncovering Master‐Servant Relationships” by Alsamawi and colleagues. Their article uses extended input‐output analysis to calculate employment and income footprints and, consequently, quantifies and provides an analysis of the average wages embodied in consumption of countries in comparison with the wages received by domestic workers. In effect, Alsamawi and colleagues show the extent of inequality in labor income, especially between developed and developing economies, traced throughout the global supply chains, but ignore the price differentials existing between countries in their discussion of the welfare implications of global trade on workers. This commentary contends the appropriateness of adjusting nominal compensation of workers to purchasing power parity (PPP) when undertaking global comparisons that pertain to well‐being and recalculates the employment footprints and income footprints of nations with PPP adjustment. The price adjustment in this work is intended to show a more accurate depiction of the disparity among workers of different nations when their labor incomes are deflated by the index price of consumption goods in their country. Using observations covering 189 countries and 14,839 sectors for the period 1990–2011, the results of the adjustment reveal that the ratio of domestic wages to foreign wages paid in support of a country's consumption (footprint wages) tends to be underestimated for labor‐exporting countries (developing economies with relatively cheaper consumption goods) and overestimated for labor‐importing countries (developed economies with more expensive consumption goods), thus demonstrating, generally, relatively less income inequality than previously exposed.     

Behaviour of the hyphae of<Emphasis Type="Italic"> Laccaria laccata</Emphasis> in the presence of<Emphasis Type="Italic"> Trichoderma harzianum</Emphasis> in vitro

The growth rate and the behaviour of Laccaria laccata and Trichoderma harzianum hyphae in co-culture and in the rhizosphere of 3-month-old Pinus sylvestris seedlings grown in vitro were investigated. In the interaction zone, hyphae of L. laccata became more pigmented and formed short branches growing towards the hyphae of the saprobic fungus, coiled around them and penetrated sporadically. Vacuolated hyphae of T. harzianum showed protoplasm granulation and breaks in walls followed by release of protoplasts. In the rhizosphere, the mantle hyphae of L. laccata showed a tendency to surround conidia of T. harzianum. No obvious penetration of the conidial walls by the hyphae of the mycorrhizal fungus was observed by scanning electron microscopy. Instead, in rare cases, the hyphae of L. laccata showed marked wrinkles, and a partial degradation of a mucilaginous material covering the mantle appeared to occur.     

Serial isoelectric focusing as an effective and economic way to obtain maximal resolution and high-throughput in 2D-based comparative proteomics of scarce samples: proof-of-principle

In 2D-based comparative proteomics of scarce samples, such as limited patient material, established methods for prefractionation and subsequent use of different narrow range IPG strips to increase overall resolution are difficult to apply. Also, a high number of samples, a prerequisite for drawing meaningful conclusions when pathological and control samples are considered, will increase the associated amount of work almost exponentially. Here, we introduce a novel, effective, and economic method designed to obtain maximum 2D resolution while maintaining the high throughput necessary to perform large-scale comparative proteomics studies. The method is based on connecting different IPG strips serially head-to-tail so that a complete line of different IPG strips with sequential pH regions can be focused in the same experiment. We show that when 3 IPG strips (covering together the pH range of 3-11) are connected head-to-tail an optimal resolution is achieved along the whole pH range. Sample consumption, time required, and associated costs are reduced by almost 70%, and the workload is reduced significantly.     

Ontogeny of the appendicularian <Emphasis Type="Italic">Oikopleura dioica</Emphasis> (Tunicata,Chordata) reveals characters similar to ascidian larvae with sessile adults

Appendicularians have always occupied a central role in considerations of tunicate and chordate evolution. Two hypotheses have been proposed – one holds that appendicularia represents the sister taxon to the remaining tunicates, the other suggests that appendicularians were derived from an ascidian-like ancestor. In the present study I report results from electron microscopic investigation of larval tunicates including the first electron microscopic investigation of the tail of the early ontogenetic appendicularian “Streckform” and discuss their phylogenetic implications. The early “Streckform” of Oikopleura dioica Fol, 1872 is invested with an extracellular covering that consists of an inner electron-light layer and an electron-dense outermost layer. In addition, the extracellular covering forms fin blades. Because these traits are shown to be similar to the tunic of different ascidian larvae, the extracellular covering in early appendicularian embryos is suggested to be homologous to the larval tunic of ascidian larvae. Overall, the tail of early developmental stages of appendicularians consists of a mosaic of apomorphic and plesiomorphic features. The straight, continuous endodermal strand was inherited from a common chordate ancestor whereas the finlets of larvae, consisting of extracellular material, were inherited from a common tunicate ancestor. The horizontal orientation of the tail as a whole was inherited from the last common ancestor of appendicularians and aplousobranch ascidians, and the discovered floating extension at the posterior tip of the tail is unique to the holoplanktonic Oikopleura dioica. These findings support the hypothesis that Appendicularia is derived from a sessile, ascidian-like ancestor.     

The influence of light,darkness, and lack of CO2 on phloem translocation in detached maize leaves

Summary Longitudinal strips from leaf blades of Zea mays L., with veins continuous along their whole length, proved to be a very uniform and convenient material for translocation experiments. Under normal photosynthetic conditions a very strong basipetal assimilate movement was shown. In the dark this movement persisted as long as starch reserves were available. Parts of the strips exposed to darkness or to CO₂-free air, i.e. nonphotosynthetic conditions, became strong sinks which attracted assimilates, darkness having the strongest effect. Microradioautographs showed that transport of assimilates took place in the sieve tubes of the phloem.