Wheat domestication: lessons for the future

Wheat was one of the first crops to be domesticated more than 10,000 years ago in the Middle East. Molecular genetics and archaeological data have allowed the reconstruction of plausible domestication scenarios leading to modern cultivars. For diploid einkorn and tetraploid durum wheat, a single domestication event has likely occurred in the Karacadag Mountains, Turkey. Following a cross between tetraploid durum and diploid T.?tauschii, the resultant hexaploid bread wheat was domesticated and disseminated around the Caucasian region. These polyploidisation events facilitated wheat domestication and created genetic bottlenecks, which excluded potentially adaptive alleles. With the urgent need to accelerate genetic progress to confront the challenges of climate change and sustainable agriculture, wild ancestors and old landraces represent a reservoir of underexploited genetic diversity that may be utilized through modern breeding methods. Understanding domestication processes may thus help identifying new strategies.     

Evidence suggesting preadaptation to domestication throughout the small Felidae

One obstacle in the development of a coherent theoretical framework for the process of animal domestication is the rarity of domestication events in human history. It is unclear whether: (1) many species are suitable for domestication, the limiting factor being the requirement of people for new domestic animals; or (2) very few species are preadapted for domestication. Comparisons between 16 species and subspecies of small cats (Felidae) kept in zoos indicated that affiliative behaviour towards people, an important preadaptation to domestication, is widely, if patchily, distributed throughout this taxon, and is not concentrated in species closely related to the domestic cat, Felis silvestris catus . The highest proportion of individuals showing affiliative behaviour was found in the ocelot lineage, which is estimated to have diverged from the rest of the Felidae between 5 and 13 Mya. The domestication of F. silvestris alone among felids is therefore likely to have been the result of a specific set of human cultural events and requirements in the Egyptian New Kingdom, rather than the consequence of a unique tendency to tame-ness in this subspecies.© 2002 The Linnean Society of London, Biological Journal of the Linnean Society , 75 , 2002, 361–366.     

Molecular and functional diversity of maize

Over the past 10,000 years, man has used the rich genetic diversity of the maize genome as the raw material for domestication and subsequent crop improvement. Recent research efforts have made tremendous strides toward characterizing this diversity: structural diversity appears to be largely mediated by helitron transposable elements, patterns of diversity are yielding insights into the number and type of genes involved in maize domestication and improvement, and functional diversity experiments are leading to allele mining for future crop improvement. The development of genome sequence and germplasm resources are likely to further accelerate this progress.     

From crop domestication to super-domestication

Research related to crop domestication has been transformed by technologies and discoveries in the genome sciences as well as information-related sciences that are providing new tools for bioinformatics and systems' biology. Rapid progress in archaeobotany and ethnobotany are also contributing new knowledge to understanding crop domestication. This sense of rapid progress is encapsulated in this Special Issue, which contains 18 papers by scientists in botanical, crop sciences and related disciplines on the topic of crop domestication. One paper focuses on current themes in the genetics of crop domestication across crops, whereas other papers have a crop or geographic focus. One feature of progress in the sciences related to crop domestication is the availability of well-characterized germplasm resources in the global network of genetic resources centres (genebanks). Germplasm in genebanks is providing research materials for understanding domestication as well as for plant breeding. In this review, we highlight current genetic themes related to crop domestication. Impressive progress in this field in recent years is transforming plant breeding into crop engineering to meet the human need for increased crop yield with the minimum environmental impact - we consider this to be 'super-domestication'. While the time scale of domestication of 10 000 years or less is a very short evolutionary time span, the details emerging of what has happened and what is happening provide a window to see where domestication might - and can - advance in the future.     

栽培茶树的驯化起源与传播

茶作为世界上最重要的饮品之一, 其栽培类型的驯化起源一直是人们关注的热点。本文总结了近年相关研究的进展, 讨论了存在的问题, 并对未来的研究方向提出建议。长江流域及以南地区分布有众多栽培茶树的野生近缘种, 特别集中于云南、贵州、广西等地; 一方面南方各族语言中“茶”发音的相似, 暗示了茶知识起源的单一性, 最可能起源于古代的巴蜀或云南, 另一方面遗传分析揭示栽培的茶存在多个起源中心, 即使Camellia sinensis (L.) O. Kuntze的几个栽培变种也可能起源于不同的地区; 文献记载, 茶的栽培中心曾经从西向东再向南迁移, 遗传多样性的变化也揭示了这一可能性, 但考古发现却提示最早的栽培茶可能出现在长江流域的最东部。我们推测在茶知识及栽培品种的传播过程中, 各地野生近缘植物的基因渗入栽培类型中, 或各地居民直接用当地野生茶培育出新的栽培茶类型, 从而导致遗传上的复杂性和语言上的一致性并存。茶树的祖先类型、起源地点、起源时间以及栽培品种的演变历程都还需要更为明确的证据, 未来应该以整个茶组植物为对象, 将茶文化、群体遗传学、谱系地理、人类学、气候变化、考古等多学科研究进行整合分析。     

群体遗传学下动物驯化研究进展

动物驯化是将野生动物改变为能够长期稳定饲养的家养动物的过程。作为新石器时代农业革命的内容,驯化是人类社会文明进步的重要标志之一。由于和人类的密切关系,驯化不仅改变了动物的野生状态,也改变了人类的生活习性和文明进程。动物驯化研究的关键问题包含驯化祖先是谁、驯化所产生的改变及驯化时间地点等。随着高通量基因组技术和对应分析方法的发展,目前研究动物驯化一般基于群体水平,在群体遗传学的框架下研究动物驯化过程中的重要事件。本文总结了群体遗传学下动物驯化研究的相关内容,包括群体动态历史、选择信号、基因交流等,着重介绍了基因选择初始时间和基因交流时间两个新的拓展内容及分析方法,概述了家猪(Sus scrofa f. domestica)、家鸡(Gallus gallus domesticus)、绵羊(Ovis aries)和山羊(Caprine hircus)等几种主要农业动物近期驯化研究的进展,以期为动物驯化研究提供了新的方向和视角。     

Testing the relationship between domestication and developmental instability in rainbow trout,Oncorhynchus mykiss (Teleostei,Salmonidae)

Fish domestication is an evolutionary process arising in captivity through genetic and developmental mechanisms, producing organisms performing more poorly than wild conspecifics in the natural environment. Culture conditions could be suboptimal for fish at particular life cycle stages, presenting environmental disturbances leading to developmental instability. The limited size of captive lots, moreover, can result in the loss of genetic variation, and the resulting homozygosity (as well as hybridization and mutation) could have strong harmful effects on developmental stability. Rainbow trout are the most widely‐cultured species in Europe and North America, having been in culture for more than a century. Prolonged artificial selection for desired traits and incidental effects of domestication has led to the development of a ‘farmed type’. Fluctuating asymmetry, variations in meristic counts, and skeletal anomalies were examined in several rainbow trout captive and wild clonal lines as indicators of developmental instability. Differences in developmental stability were identified among lines and correlated with different degrees of exposure to captivity. Some relationship between meristic counts and domestication level was found in the present study, with the number of vertebrae and of dorsal pterygiophores and rays being the strongest predictors of the domestication level. However, the occurrence of skeletal anomalies and fluctuating asymmetry were apparently not related to the level of exposure to captivity. The findings of the present study will facilitate the selection of clonal lines with divergent phenotypes for subsequent quantitative trait loci analyses aimed at identifying genome regions linked with morpho‐anatomical and physiological adaptive responses to captivity. © 2015 The Linnean Society of London, Biological Journal of the Linnean Society, 2015, 114 , 608–628.     

驯化对作物微生物组多样性和群落结构的影响及作用途径

植物与共存微生物的相互作用对植物的生长、发育、健康等具有重大影响。人类驯化导致现代作物品种与其野生祖先在生理遗传特性、生长环境等方面存在明显差异, 这必然会影响作物与其微生物组的相互作用。理解驯化对作物微生物组的影响及其作用机理, 是充分应用微生物组进行作物改良或人工育种的重要理论基础。结合课题组前期研究基础, 该文综述了驯化对作物地下和地上部分细菌和真菌(尤其是益生菌和病原菌)群落组成和多样性影响的研究现状; 并结合驯化对作物植株形态、根系构型、根系分泌物等生理特征以及生长环境的影响, 分析了驯化塑造作物微生物组的作用途径, 提出了该领域值得重点关注的研究和发展方向。     

Considerations on the evolution of the chromosome complement in odonata

The views of earlier authors on the karyotypic evolution in dragonflies are criticised and a new hypothesis is proposed. It is based on integration of independent karyological, morphological and paleontological evidence, is accounting for the origin of any chromosome number, and is in agreement with the evidence found and the opinions expressed so far on the course of the karyotype numerical evolution in the other insect orders possessing holokinetic chromosomes.It seems most likely that the present numerical variation in odonate karyotypes has developed through the occurrence of breaks (leading to haploid numbers 10 to 15) and fusions (leading to the complements 3 to 7) in ancestral forms which had n=9.Low-n complements have been reported for tropical species only, whereas secondarily reduced high-n complements so far have been recorded only in dragonflies from the Temperate Region.The biological significance of the karyotype variation within a species is considered and a list of the known dragonfly hybrids is given.Paper presented at the Meeting of the Entomological Society of the Netherlands, 15 April 1967, Amsterdam and at the Meeting of the Genetical Society of the Netherlands, 21 April 1967, Utrecht.     

Forestry's fertile crescent: the application of biotechnology to forest trees

Relative to crop plants, the domestication of forest trees is still in its infancy. For example, the domestication of many crop plants was initiated some 10,000 years ago in the so-called 'Fertile Crescent' of the Middle East. By contrast, the domestication of forest trees for the purposes of producing more fibre began in earnest in the last half century. The application of biotechnology to forest trees offers a great potential to hasten the pace of tree improvement for desirable end uses. This review outlines some of the progress that has been made in the application of biotechnology to forest trees, and considers the prospects for biotechnologically based tree improvement in the future.     

Highlights from the 2010 BAS/BSCR spring meeting: New Frontiers in Cardiovascular Research

The British Atherosclerosis Society (BAS)/British Society for Cardiovascular Research (BSCR) spring meeting was held in Manchester, UK, on 7-8 June 2010. Experts in the field of systems biology, proteomics, metabolomics and miRNAs presented how these techniques can be used to discover 'New Frontiers in Cardiovascular Research'. The conference was attended by over 150 participants, mainly from the UK. A total of 2 days of presentations and a poster session with 55 posters provided the possibility to discuss the latest research results and showed the opportunities that new techniques can offer in cardiovascular research.     

Highlights from the 2010 BAS/BSCR spring meeting: New Frontiers in Cardiovascular Research

The British Atherosclerosis Society (BAS)/British Society for Cardiovascular Research (BSCR) spring meeting was held in Manchester, UK, on 7–8 June 2010. Experts in the field of systems biology, proteomics, metabolomics and miRNAs presented how these techniques can be used to discover ‘New Frontiers in Cardiovascular Research’. The conference was attended by over 150 participants, mainly from the UK. A total of 2 days of presentations and a poster session with 55 posters provided the possibility to discuss the latest research results and showed the opportunities that new techniques can offer in cardiovascular research.     

European domestic horses originated in two holocene refugia

The role of European wild horses in horse domestication is poorly understood. While the fossil record for wild horses in Europe prior to horse domestication is scarce, there have been suggestions that wild populations from various European regions might have contributed to the gene pool of domestic horses. To distinguish between regions where domestic populations are mainly descended from local wild stock and those where horses were largely imported, we investigated patterns of genetic diversity in 24 European horse breeds typed at 12 microsatellite loci. The distribution of high levels of genetic diversity in Europe coincides with the distribution of predominantly open landscapes prior to domestication, as suggested by simulation-based vegetation reconstructions, with breeds from Iberia and the Caspian Sea region having significantly higher genetic diversity than breeds from central Europe and the UK, which were largely forested at the time the first domestic horses appear there. Our results suggest that not only the Eastern steppes, but also the Iberian Peninsula provided refugia for wild horses in the Holocene, and that the genetic contribution of these wild populations to local domestic stock may have been considerable. In contrast, the consistently low levels of diversity in central Europe and the UK suggest that domestic horses in these regions largely derive from horses that were imported from the Eastern refugium, the Iberian refugium, or both.     

亚洲栽培稻主要驯化性状研究进展

水稻是研究谷类作物驯化的良好材料, 其中种子落粒性消失、休眠性减弱和株型上的变化是水稻驯化过程中的3个关键事件, 造就了高产、发芽整齐及可密植的现代水稻。落粒性丧失一直被认为是野生稻驯化形态学上的最直接证据, 而控制落粒的主要基因Sh4和qSH1分别暗示不同的水稻驯化历史。种子休眠性的减弱适应了现代农业生产上同步发芽的需求, Sdr4、qSD7-1和qSD12基因是目前已知的调控种子休眠性的3个关键位点。野生稻匍匐生长等特点与其长期所在的易变生境有关, 而栽培稻的直立生长形态则适应了农业上密植生产的需要, 受PROG1等基因控制。野生稻的异交特性促进了驯化基因在群体间传播, 而自花授粉则使驯化基因得以稳定遗传, 从而加快人工选择的累积。目前的水稻驯化研究侧重于单基因或一些中性标记, 而对控制驯化性状的网络化通路的进化研究却相对缺乏。随着功能基因组研究的深入, 驯化性状的分子机理将会被全面揭示, 而基于此的网络化通路研究必将更加真实地反应水稻驯化过程。文章综述了水稻关键驯化性状分子机理的研究进展, 为驯化基因网络的研究提供参考, 也为水稻分子设计改良提供新的思路。     

Cross-linking/mass spectrometry as a new field and the proteomics information mountain of tomorrow

The European Proteomics Association (EuPA) 2012 Scientific Congress ‘New Horizons and Applications for Proteomics’, hosted by the British Society for Proteome Research (BSPR)

Glasgow, Scotland, UK, 12 July 2012

Cross-linking/mass spectrometry ended decades of method developments and entered the era of applications at this year’s European Proteomics Association meeting. The train has started moving, with successful applications of this tool by multiple pioneering laboratories addressing biological and structural problems. Proteomics, on the other side, sees ever increasing data volumes, leading to questions as to how to store the data mountain publically, use it and convert it into testable hypotheses. The European Proteomics Association meeting has been complementary to the American Society for Mass Spectrometry meeting in many ways, also thanks to its more manageable size and the vision of the organizers in inviting some of Europe’s best emerging minds.     

Mouse genomics gets the royal treatment

A report on the Genetics Society autumn meeting The mouse: genetics and genome', The Royal Society, London, UK, 14 November 2003.     

Advances in the conservation of British mammals, 1954–2004: 50 years of progress with The Mammal Society

1. The Mammal Society was established in 1954 to link amateurs and professionals in promoting the study of mammals. It now directly assists British conservation science, and has fostered The British Deer Society, the National Federation of Badger Groups, The Bat Conservation Trust, the Ungulate Research Group and Sea Watch Foundation. The Society also has strong links with the Zoological Society of London, the Vincent Wildlife Trust and the People's Trust for Endangered Species/Mammals Trust UK, as well as with many other non‐governmental organizations (NGOs) and statutory bodies. 2. The Mammal Society provides fora for discussion, scientific symposia, mammal publications, and practical studies. It has also instigated major advances in the presentation of scientific knowledge through three editions of The Handbook of British Mammals under three successive editors: H.N. Southern, G.B. Corbet and S. Harris. 3. From the 1970s the Society has highlighted conservation concerns (e.g. the decline of otters and persecution and management of badgers), informed legislation, supported many surveys, including harvest mice, pine marten, polecat, small rodents, hares, yellow‐necked mice and foxes, and published authoritative species’ accounts, guides to methodology, Mammal Review, Notes/Communications from The Mammal Society, the annual Current Projects on British Mammals and other scientific and educational material. 4. Country‐wide mammal recording and training (Look Out for Mammals) developed in the 1990s alongside the Endangered British Mammals Fund. The ‘ground breaking’A Red Data Book for British Mammals, and A Review of British Mammals, both drew on Mammal Society expertise, helping to meet the UK Government's conservation responsibilities and emphasizing the growing influence of The Society. Co‐operative monitoring has been developed with the British Trust for Ornithology through the Winter Mammal Monitoring scheme and is further projected with more than 20 NGOs and statutory bodies forming the ‘Tracking Mammals Partnership’. 5. The Mammal Society now advises on UK Biodiversity Action Plans and plays a lead role in UK mammal conservation, highlighting problems and promoting solutions. However, many British mammals are still declining, many are neither legally protected nor subject to national conservation initiatives, and data are still lacking on the status of many terrestrial and most marine species. Much has been done, but there is still much to do.     

Salt stress under the scalpel – dissecting the genetics of salt tolerance

Salt stress limits the productivity of crops grown under saline conditions, leading to substantial losses of yield in saline soils and under brackish and saline irrigation. Salt tolerant crops could alleviate these losses while both increasing irrigation opportunities and reducing agricultural demands on dwindling freshwater resources. However, despite significant efforts, progress towards this goal has been limited, largely because of the genetic complexity of salt tolerance for agronomically important yield‐related traits. Consequently, the focus is shifting to the study of traits that contribute to overall tolerance, thus breaking down salt tolerance into components that are more genetically tractable. Greater consideration of the plasticity of salt tolerance mechanisms throughout development and across environmental conditions furthers this dissection. The demand for more sophisticated and comprehensive methodologies is being met by parallel advances in high‐throughput phenotyping and sequencing technologies that are enabling the multivariate characterisation of vast germplasm resources. Alongside steady improvements in statistical genetics models, forward genetics approaches for elucidating salt tolerance mechanisms are gaining momentum. Subsequent quantitative trait locus and gene validation has also become more accessible, most recently through advanced techniques in molecular biology and genomic analysis, facilitating the translation of findings to the field. Besides fuelling the improvement of established crop species, this progress also facilitates the domestication of naturally salt tolerant orphan crops. Taken together, these advances herald a promising era of discovery for research into the genetics of salt tolerance in plants.     

作物驯化的遗传学研究及其在大豆育种中的应用

驯化遗传学是进化生物学研究的一个重要分支, 对作物驯化历程进行深入探索, 可以更好地认识人类早期农耕文明的产生和发展, 了解物种的形成乃至生命的起源和进化, 对指导人们利用野生资源来改良现有的栽培作物和培育新的有价值的品种也具有重要的意义。本文综述了作物驯化的遗传学研究内容和进展, 以及重要作物大豆驯化起源的研究概况, 探讨了目前作物驯化研究对大豆驯化遗传学及野生大豆资源综合利用的指导意义。     

作物驯化的遗传学研究及其在大豆育种中的应用

驯化遗传学是进化生物学研究的一个重要分支,对作物驯化历程进行深入探索,可以更好地认识人类早期农耕文明的产生和发展,了解物种的形成乃至生命的起源和进化,对指导人们利用野生资源来改良现有的栽培作物和培育新的有价值的品种也具有重要的意义。本文综述了作物驯化的遗传学研究内容和进展,以及重要作物大豆驯化起源的研究概况,探讨了目前作物驯化研究对大豆驯化遗传学及野生大豆资源综合利用的指导意义。