Covariance of floral and vegetative traits in four species of Ranunculaceae: a comparison between specialized and generalized pollination systems

Theory predicts that tighter correlation between floral traits and weaker relationship between floral and vegetative traits more likely occur in specialized flowers than generalized flowers,favoring by precise fit with pollinators.However,traits and trait correlations frequently vary under different environments.Through detecting spatiotemporal variation in phenotypic traits (floral organ size and vegetative size) and trait correlations in four Ranunculaceae species,we examined four predictions.Overall,our results supported these predictions to a certain degree.The mean coefficient of variation (CV) of floral traits in two specialized species (Delphinium kamaonense and Aconitum gymnandrum) was marginally significantly lower than that of another two generalized species (Trollius ranunculoides and Anemone obtusiloba).The two specialized species also showed marginally significantly smaller CV in floral traits than vegetative size across the two species.The absolute mean correlation between floral and vegetative traits,or that between floral traits in species with specialized flowers was not significantly lower,or higher than that in generalized plants,weakly supporting the predictions.Furthermore,we documented a large variation in trait correlations of four species among different seasons and populations.Study of covariance of floral and vegetative traits will benefit from the contrast of results obtained from generalized and specialized pollination systems.     

Field Anesthesia and Health Assessment of Free-ranging <Emphasis Type="Italic">Cebus capucinus</Emphasis> in Panama

Health and disease are critical factors for understanding primate evolution and for developing effective conservation and management strategies. However, comprehensive health assessments of wild primate populations are rare, in part because of the difficulty and risk of chemically immobilizing subjects to obtain the necessary biological samples. We report here the results of a health assessment, as well as the methods and drug dosages used to capture white-faced capuchins (Cebus capucinus) on Barro Colorado Island, Panama. We captured and measured 24 capuchins as part of an ongoing radiotelemetry study, and collected biological samples from 9 of them for a comprehensive health survey. Telazol® was very effective for immobilizing and capturing capuchins, although the doses we used were higher than those recommended for captive capuchins. High Telazol doses immobilized individuals quickly, ensuring that we were able to find and recover the sedated monkeys. The capuchins were generally in good condition, and had few ecto-, hemo-, or intestinal parasites. However, all but 1 of the adults had substantial dental abnormalities. In addition, 1 juvenile had indeterminate genitalia that we believe to be the result of hypospadias. Seven of the capuchins tested positive for exposure to Herpesvirus tamarinus and all individuals tested positive for exposure to Cebus cytomegalovirus. Hematology, serum chemistry, and plasma mineral levels from the wild individuals were, for the most part, comparable to those recorded for captive Cebus capucinus, and contribute to establishing baseline health values for the species.     

Variation in stand structure,light and seedling abundance across a tropical moist forest chronosequence,Panama

Abstract. We asked whether forest structure and understory light environments across a tropical moist forest chronosequence followed predictions of a 4‐phase model of secondary succession (establishment, thinning, transition and steady‐state) and whether seedling density and diversity were functions of light availability as predicted by this model. Using aerial photographs, we identified eight second‐growth stands (two each aged ca. 20, 40, 70, and 100 yr) and two old‐growth stands within Barro Colorado Nature Monument, Panama. Trees and seedlings were sampled in nested, contiguous quadrats in 2 160‐m transects in each stand. Light was measured as percent transmittance of diffuse photosynthetically active radiation (TPAR) at each seedling quadrat and by estimation of percent total incident radiation during the growing season from hemispherical canopy photographs. Basal area, tree density, and canopy height followed predictions of the 4‐phase model. Percent total radiation, but not TPAR, declined with stand age as did seedling density. While seedlings were more likely to occur in quadrats at higher light levels, much variation in seedling density was not related to light availability. Seedling patch sizes were small irrespective of light patches, estimated as semivariance ranges. Seedling species richness was a function of seedling density; estimates of species diversity unbiased by density did not vary systematically as a function of stand age. Proximate seed sources, efficient dispersal mechanisms, and appropriate establishment conditions can promote establishment of species‐rich communities early in successions of heterogeneous tropical moist forest.     

Response of recruitment to light availability across a tropical lowland rain forest community

1.  Many hypotheses about species coexistence involve differential resource use and trade-offs in species' life-history traits. Quantifying resource use across most species in diverse communities, although, has seldom been attempted.
2.  We use a hierarchical Bayesian approach to quantify the light dependence of recruitment in 263 woody species in a 50-ha long-term forest census plot in Panama. Data on sapling recruitment were obtained using the 1985–1990 and 1990–1995 census intervals. Available light was estimated for each recruit from yearly censuses of canopy density.
3.  We use a power function (linear log–log relationship) to model the light effect on recruitment. Different responses of recruitment to light are expressed by the light effect parameter b . The distribution of b had a central mode at 0.8, suggesting that recruitment of many species responds nearly linearly to increasing light.
4.  Nearly every species showed increases in recruitment with increasing light. Just nine species (3%) had recruitment declining with light, while 198 species (75%) showed increasing recruitment in both census intervals. Most of the increases in recruitment were decelerating, i.e. the increase was less at higher light ( b  < 1). In the remaining species, the response to light varied between census intervals (24 species) or species did not have recruits in both intervals (41 species).
5.   Synthesis. Nearly all species regenerate better in higher light, and recruitment responses to light are spread along a continuum ranging from modest increase with light to a rather strict requirement for high light. These results support the hypothesis that spatio-temporal variation in light availability may contribute to the diversity of tropical tree species by providing opportunities for niche differentiation with respect to light requirements for regeneration.     

The genetic dimension of pest pressure in the tropical rainforest

Wet tropical forests are among the most diverse ecosystems on Earth and can host several hundreds of tree species per hectare. To maintain such diversity, the community must contain large numbers of relatively rare species rather than be dominated by a few very common trees, as is often the case in temperate forests. Explaining the mechanisms preventing dominance by common species has been a major task of tropical forest ecology. One of the most promising mechanisms is negative density dependence (NDD) of tree abundance driven by pests, including fungal diseases (‘pest pressure’). NDD entails that the chance of survival of a sapling increases with the distance from a mature tree of the same species, thus preventing species from becoming locally dominant. Curiously, the strength of NDD is negatively correlated with abundance, meaning that tree species that are more common generally show weaker NDD (Comita et al. 2010 ). Interactions between plants and soil pathogens have been shown to play an important role in NDD (Klironomos 2002 ), and rare species are apparently more strongly affected (Mangan et al. 2010 ). However, the genetic mechanisms underlying this phenomenon have remained obscure. In this issue of Molecular Ecology, Marden et al. ( 2017 ) suggest that reduced diversity of the genes involved in pathogen recognition (Resistance genes or R genes) could explain why NDD is stronger in locally rare species.     

Propagation of local interactions create global gap structure and dynamics in a tropical rainforest

Gap dynamics in tropical forests are of interest because an understanding of them can help to predict canopy structure and biodiversity. We present a simple cellular automaton model that is capable of capturing many of the trends seen in the canopy gap pattern of a complex tropical rainforest on the Barro Colorado Island (BCI) using a single set of model parameters. We fit the global and local densities, the cluster size distributions, and two correlation functions, for gaps, gap formations, and gap closures determined from a spatial map of the forest (1983-1984). To the best of our knowledge, this is the first report that the cluster size distributions of gap formations and closures in the BCI are both power laws. An important element in the model is that when a transition from gap to non-gap (closure), or vice versa (formation), occurs, this transition is allowed to expand into adjacent cells in order to make different cluster sizes of transitions. Model results are in excellent agreement with reported field data. The propagation of local interactions is necessary in order to obtain the complex dynamics of the gap pattern. We also establish a connection between the global and local densities via the neighborhood-dependent transition rates and the effective global transition rates.     

Spatial scale and sampling resolution affect measures of gap disturbance in a lowland tropical forest: implications for understanding forest regeneration and carbon storage

Treefall gaps play an important role in tropical forest dynamics and in determining above-ground biomass (AGB). However, our understanding of gap disturbance regimes is largely based either on surveys of forest plots that are small relative to spatial variation in gap disturbance, or on satellite imagery, which cannot accurately detect small gaps. We used high-resolution light detection and ranging data from a 1500 ha forest in Panama to: (i) determine how gap disturbance parameters are influenced by study area size, and the criteria used to define gaps; and (ii) to evaluate how accurately previous ground-based canopy height sampling can determine the size and location of gaps. We found that plot-scale disturbance parameters frequently differed significantly from those measured at the landscape-level, and that canopy height thresholds used to define gaps strongly influenced the gap-size distribution, an important metric influencing AGB. Furthermore, simulated ground surveys of canopy height frequently misrepresented the true location of gaps, which may affect conclusions about how relatively small canopy gaps affect successional processes and contribute to the maintenance of diversity. Across site comparisons need to consider how gap definition, scale and spatial resolution affect characterizations of gap disturbance, and its inferred importance for carbon storage and community composition.     

Mass spectrometry screening reveals widespread diversity in trichome specialized metabolites of tomato chromosomal substitution lines

Glandular secreting trichomes of cultivated tomato (Solanum lycopersicum) and close relatives produce a variety of structurally diverse volatile and non‐volatile specialized (‘secondary’) metabolites, including terpenes, flavonoids and acyl sugars. A genetic screen is described here to profile leaf trichome and surface metabolite extracts of nearly isogenic chromosomal substitution lines covering the tomato genome. These lines contain specific regions of the Solanum pennellii LA0716 genome in an otherwise ‘wild‐type’ M82 tomato genetic background. Regions that have an impact on the total amount of extractable mono‐ and sesquiterpenes (IL2‐2) or only sesquiterpenes (IL10‐3) or specifically influence accumulation of the monoterpene α‐thujene (IL1‐3 and IL1‐4) were identified using GC‐MS. A rapid LC‐TOF‐MS method was developed and used to identify changes in non‐volatile metabolites through non‐targeted analysis. Metabolite profiles generated using this approach led to the discovery of introgression lines producing different acyl chain substitutions on acyl sugar metabolites (IL1‐3/1‐4 and IL8‐1/8‐1‐1), as well as two regions that influence the quantity of acyl sugars (IL5‐3 and IL11‐3). Chromosomal region 1‐1/1‐1‐3 was found to influence the types of glycoalkaloids that are detected in leaf surface extracts. These results show that direct chemical screening is a powerful way to characterize genetic diversity in trichome specialized metabolism.     

Comprehensive mass spectrometry‐guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae

Plants produce a myriad of specialized metabolites to overcome their sessile habit and combat biotic as well as abiotic stresses. Evolution has shaped the diversity of specialized metabolites, which then drives many other aspects of plant biodiversity. However, until recently, large‐scale studies investigating the diversity of specialized metabolites in an evolutionary context have been limited by the impossibility of identifying chemical structures of hundreds to thousands of compounds in a time‐feasible manner. Here we introduce a workflow for large‐scale, semi‐automated annotation of specialized metabolites and apply it to over 1000 metabolites of the cosmopolitan plant family Rhamnaceae. We enhance the putative annotation coverage dramatically, from 2.5% based on spectral library matches alone to 42.6% of total MS/MS molecular features, extending annotations from well‐known plant compound classes into dark plant metabolomics. To gain insights into substructural diversity within this plant family, we also extract patterns of co‐occurring fragments and neutral losses, so‐called Mass2Motifs, from the dataset; for example, only the Ziziphoid clade developed the triterpenoid biosynthetic pathway, whereas the Rhamnoid clade predominantly developed diversity in flavonoid glycosides, including 7‐O‐methyltransferase activity. Our workflow provides the foundations for the automated, high‐throughput chemical identification of massive metabolite spaces, and we expect it to revolutionize our understanding of plant chemoevolutionary mechanisms.     

Quantitative trait loci analysis of seed‐specialized metabolites reveals seed‐specific flavonols and differential regulation of glycoalkaloid content in tomato

Given the potential health benefits (and adverse effects), of polyphenolic and steroidal glycoalkaloids in the diet there is a growing interest in fully elucidating the genetic control of their levels in foodstuffs. Here we carried out profiling of the specialized metabolites in the seeds of the Solanum pennellii introgression lines identifying 338 putative metabolite quantitative trait loci (mQTL) for flavonoids, steroidal glycoalkaloids and further specialized metabolites. Two putative mQTL for flavonols and one for steroidal glycoalkaloids were cross‐validated by evaluation of the metabolite content of recombinants harboring smaller introgression in the corresponding QTL interval or by analysis of lines from an independently derived backcross inbred line population. The steroidal glycoalkaloid mQTL was localized to a chromosomal region spanning 14 genes, including a previously defined steroidal glycoalkaloid gene cluster. The flavonoid mQTL was further validated via the use of transient and stable overexpression of the Solyc12g098600 and Solyc12g096870 genes, which encode seed‐specific uridine 5′‐diphosphate‐glycosyltransferases. The results are discussed in the context of our understanding of the accumulation of polyphenols and steroidal glycoalkaloids, and how this knowledge may be incorporated into breeding strategies aimed at improving nutritional aspects of plants as well as in fortifying them against abiotic stress.     

Relating belowground microbial composition to the taxonomic,phylogenetic, and functional trait distributions of trees in a tropical forest

The complexities of the relationships between plant and soil microbial communities remain unresolved. We determined the associations between plant aboveground and belowground (root) distributions and the communities of soil fungi and bacteria found across a diverse tropical forest plot. Soil microbial community composition was correlated with the taxonomic and phylogenetic structure of the aboveground plant assemblages even after controlling for differences in soil characteristics, but these relationships were stronger for fungi than for bacteria. In contrast to expectations, the species composition of roots in our soil core samples was a poor predictor of microbial community composition perhaps due to the patchy, ephemeral, and highly overlapping nature of fine root distributions. Our ability to predict soil microbial composition was not improved by incorporating information on plant functional traits suggesting that the most commonly measured plant traits are not particularly useful for predicting the plot‐level variability in belowground microbial communities.     

Impact of Atta colombica Colonies on Understory Vegetation and Light Availability in a Neotropical Forest1

We quantified patterns of vegetation removal and light availability above Atta colombica nests on Barro Colorado Island, Panama. Ants cleared vegetation less than 1 cm in diameter from an area of 77 m², and up to 3 m above ground level. Overall light availability 1.5 m above ground level was 49 percent greater at ant nest sites than at sites in undisturbed understory. These higher light levels fell within the range known to enhance growth of both shade tolerant and pioneer species.     

Herbivory Rate of Leaf-Cutting Ants in a Tropical Moist Forest in Panama at the Population and Ecosystem Scales

Leaf-cutting ants are frequently characterized as the major herbivores in the Neotropics, but quantitative data to back up this assumption are scarce. In this study, the consumption and herbivory rates for the entire leaf-cutting ant ( Atta colombica , Formicidae) population in an old secondary forest on Barro Colorado Island (BCI) in Panama were determined over 15 mo (on average 49 colonies). The number of harvested leaf fragments was calculated from monthly refuse deposition rates of the colonies and the regression between refuse deposition and harvesting rates. The inclusion of fragment characteristics (proportion of leaf fragments in the harvest, average fragment weight, and area) allowed us to calculate consumption and herbivory rates at colony, population, and ecosystem levels. The A. colombica population harvested 13.2 tons of biomass/yr and 13.1 ha of leaf area/yr, and deposited 9.4 tons of refuse material/yr. Rates varied considerably among colonies. At the ecosystem level, i.e. , per forest area, herbivory rates were 132 kg biomass/ha/yr and 1310 m² foliage/ha/yr. For the area on BCI where A. colombica occurs (100 ha), this is equivalent to 2.1 percent of the foliage area in the forest or 1.7 percent of the annual leaf-area production. This value is considerably lower than previously published estimates of leaf-cutting ant herbivory rates in tropical forests.     

Nutritional Values of 14 Fig Species and Bat Feeding Preferences in Panama1

Figs are a critical resource for many tropical frugivores, yet they often are referred to as low quality fruits. To determine their nutritional value, both as a group and for individual species, we analyzed 14 fig species from Barro Colorado Island (BCI), Panama, for fiber, tannins, lipids, protein, carbohydrates, amino acids, and minerals. Seeds and pulp were analyzed separately. Fig fruit pulp consisted of about one‐third digestible components, mostly carbohydrates with some lipids and proteins. Tannin, lignin, and water‐soluble carbohydrates showed considerable variation among species, as did fruit size. Figs contained high amounts of amino acids, such as leucine, lysine, valine, and arginine, and minerals, such as potassium, calcium, magnesium, sodium, and phosphorus. One species, Ficus insipida, contained the highest concentrations of almost all amino acids, many minerals, and protein. Small figs had as much nutritional value per gram as large figs. Free‐standing figs had higher percentages of protein, complex carbohydrates, and ash than strangler figs, which had higher percentages of water‐soluble carbohydrates, tannins, and hemicellulose. The guild of fruit‐eating bats on BCI included ten common species with diets dominated by figs. Fecal analyses and captures at ripe fig trees showed a consistent pattern of resource partitioning. Small bats preferentially ate small‐fruited and strangler figs while large bats consumed mostly large‐fruited and free‐standing figs. Small bats most often ate F. bullenei, which has high levels of lipid and carbohydrates, and F. yoponensis, which has high levels of protein. Medium and large bats most often ate F. insipida, a nutritionally superior species; their second most eaten species was F. obtusifolia, in which the large size may make it efficient to eat. Each bat ate a variety of fig species, supporting the idea that although no single species of fig may be sufficient to sustain frugivores, a mix of fig species can provide a complete set of nutrients.     

Distance‐dependent seedling mortality and long‐term spacing dynamics in a neotropical forest community

Negative distance dependence (NDisD), or reduced recruitment near adult conspecifics, is thought to explain the astounding diversity of tropical forests. While many studies show greater mortality at near vs. far distances from adults, these studies do not seek to track changes in the peak seedling curve over time, thus limiting our ability to link NDisD to coexistence. Using census data collected over 12 years from central Panama in conjunction with spatial mark‐connection functions, we show evidence for NDisD for many species, and find that the peak seedling curve shifts away from conspecific adults over time. We find wide variation in the strength of NDisD, which was correlated with seed size and canopy position, but other life‐history traits showed no relationship with variation in NDisD mortality. Our results document shifts in peak seedling densities over time, thus providing evidence for the hypothesized spacing mechanism necessary for diversity maintenance in tropical forests.