Use of a cytogenetic whole-genome comparison to resolve phylogenetic relationships among three species: implications for mammalian systematics and conservation biology

The objective was to apply a novel modification of a genome-wide, comparative cytogenetic technique (comparative genomic hybridization, comparative genomic hybridization (CGH)), to study species belonging to the myrmecophagous (ant/termite eating) mammalian orders/superorders (Pholidota, Tubulidentata, Carnivora, and Xenarthra), as a model for other applications in mammalian systematics and conservation biology. In this study, CGH was applied to high-quality metaphase spreads of pangolin (Pholidota), using probes of sloth and canine (Xenarthra and Carnivora, respectively) genomic DNA labeled with different fluorophores, thereby facilitating analysis of the visible color spectrum on pangolin karyotypes. Our results posited that pholidotes are closer to carnivores than to xenarthrans, which confirmed the current consensus that myrmecophagy in these mammalian lineages was more likely because of homoplasy (convergent evolution) than being an ancestral character. Since the modified CGH technique used is genome-wide, has chromosome-level resolution, and does not need full genome sequencing, it has considerable potential in systematics and other fields.     

Evolutionary convergence of primitive sabertooth craniomandibular morphology: the clouded leopard (<Emphasis Type="Italic">Neofelis nebulosa</Emphasis>) and <Emphasis Type="Italic">Paramachairodus ogygia</Emphasis> compared

The sabertoothed felids were among the most unusual predators in the late Tertiary ecosystems, and the sabertooth morphology is regarded as being absent from the modern ecosystems. In recent years, the primitive Paramachairodus has become well known and has yielded much valuable information on the primitive skull morphology among sabercats, providing the first evidence-based scenarios for the evolution of skull morphology in later sabercats. However, comparison of craniomandibular morphology of the extant clouded leopard Neofelis nebulosa and Paramachairodus reveals numerous similarities and subsequent divergence from other extant great cats. In several key aspects, the clouded leopard has approached a primitive sabercat craniomandibular morphology and has diverged markedly from its sister group, the Panthera lineage. A primitive sabertooth condition arose six times in the Tertiary period, not five as is traditionally advocated. The clouded leopard appears to be a useful model for understanding primitive sabercat morphology and could shed important light on sabercat evolution. The unusual nature of the clouded leopard implies that increased efforts should be spent on insuring the continuing survival of this rare and endangered species. Electronic Supplementary Material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Microwear, mechanics and the feeding adaptations of Australopithecus africanus

Recent studies of dental microwear and craniofacial mechanics have yielded contradictory interpretations regarding the feeding ecology and adaptations of Australopithecus africanus. As part of this debate, the methods used in the mechanical studies have been criticized. In particular, it has been claimed that finite element analysis has been poorly applied to this research question. This paper responds to some of these mechanical criticisms, highlights limitations of dental microwear analysis, and identifies avenues of future research.     

小麦的分类、起源与进化

小麦是世界历史上最古老的作物之一,约在一万年以前,在西南亚,人类首先成功地将小麦进行栽培生产粮食,因此小麦栽培历史和人类开化有着密切的相互关系。在现代世界农业中,小麦也是最重要的作物之一。它分布面积很广,从北纬67°的挪威、芬兰和苏联到南纬45°的阿根庭都有栽培。世界生产小麦的地区有苏联南部、美国中部平     

On the similar spatial arrangement of active site residues in PAPS-dependent and phenolic sulfate-utilizing sulfotransferases

Mammalian sulfotransferases (STs) utilize exclusively the sulfuryl group donor 3′-phosphoadenosine 5′-phosphosulfate (PAPS) to catalyze the sulfurylation reactions based on a sequential transfer mechanism. In contrast, the commensal intestinal bacterial arylsulfate sulfotransferases (ASSTs) do not use PAPS as the sulfuryl group donor, but instead catalyze sulfuryl transfer from phenolic sulfate to a phenol via a Ping-Pong mechanism. Interestingly, structural comparison revealed a similar spatial arrangement of the active site residues as well as the cognate substrates in mouse ST (mSULT1D1) and Escherichia coli CFT073 ASST, despite that their overall structures bear no discernible relationship. These observations suggest that the active sites of PAPS-dependent SULT1D1 and phenolic sulfate-utilizing ASST represent an example of convergent evolution.     

The future of DNA-DNA hybridization studies

Summary This article draws on many vertebrate examples to assess the future of DNA-DNA hybridization studies. I first discuss whether applications of the method have reached the point of diminishing returns, or rather the start of a great leap forward, in our evolutionary understanding. Vertebrate groups whose relationships are especially likely to be illuminated include parrots, pigeons, bats, pinnipeds, mammalian carnivores, frogs, and rodents. There are at least two reasons why classifications based on DNA-DNA hybridization may prove to differ from classifications based on particular character, whether these be noncoding DNA sequences or protein sequences or anatomical characters. Because evolutionary relationships can now be deduced independently of anatomical characters, this should permit a renaissance in comparative anatomical studies of adaptation. The origin of major functional shifts from changes in a small fraction of the genome is illustrated by polar bears, sea otters, warblers, vultures, and especially by humans.     

小麦的分类、起源与进化

小麦是世界历史上最古老的作物之一,约在一万年以前,在西南亚,人类首先成功地将小麦进行栽培生产粮食,因此小麦栽培历史和人类开化有着密切的相互关系。在现代世界农业中,小麦也是最重要的作物之一。它分布面积很广,从北纬67°的挪威、芬兰和苏联到南纬45°的阿根庭都有栽培。世界生产小麦的地区有苏联南部、美国中部平原和加拿大相邻地区、地中海地区、中国、印度、阿根廷北部和澳大利亚的西南部。这类作物在比较宽的环境 范围内都能获得高产。据统计,全世界有1/3的人口以小麦为主要粮食.消费的小麦食物卡值占全世界的20%以上。     

深龋修复的力学模型分析

目的:模拟下颌第一磨牙Ⅰ类洞深龋,计算机分析得到修复体最佳应力分布时基底材料与修复材料厚度比例。方法 采用三维有限元法建立数值模型,利用SAP84(V4.2)程序计算并作力学分析。结果:在能护髓前提下应尽量减少次基厚度(1)银汞修复时,银汞合金厚度应大于基底厚度时应力分布最佳。(2)树脂修复时,树脂厚度与基底厚度相近,应力分布最佳。结论 根据材料弹性模量来决定基底材料与修复材料厚度比例。     

The functional relationship between feeding type and jaw and cranial morphology in ungulates

The relationship between jaw and skull morphology and feeding type (grazer, mixed feeder, browser, frugivorous, omnivorous) was analysed in 94 species of extant ungulates. A total of 21 morphological traits of the jaw and skull (17 and 4, respectively) were analysed using analysis of covariance, with body mass as covariate. To take into account the phylogenetic effect, simulations were generated under the Brownian motion model of character evolution. Analysis of covariance was applied to these simulations and the simulated F-ratios were used to assess the signification of the F-ratios for the real values of the traits. The feeding types had a weak effect on ungulate cranial and jaw morphology in comparison with the phylogenetic effect, since, before phylogeny correction, the analysis of covariance showed statistically significant differences associated with feeding type in 15 out of the 21 traits analysed. After controlling for phylogeny, only 2 significant traits remained, the length of the coronoid process and the occipital height. Omnivorous species had shorter coronoid processes than grazers or mixed feeders, and the occipital height was greater in the omnivorous species than in the grazers, mixed feeders or browsers. The coronoid process is involved in the generation of bite force, being the effective moment arm of the temporalis muscle, and occipital height is positively related to the force exerted by the temporalis muscle. This result matches the hypothesis that species with a toughness diet should show higher bite force (“toughness” describes the resistance of a material to being mechanically broken down). When the omnivorous species were excluded from the analysis, no differences in jaw and skull morphology were detected between the rest of the feeding types. Received: 1 September 1998 / Accepted: 2 November 1998     

The proximate control of pupal color in swallowtail butterflies: implications for the evolution of environmentally cued pupal color in butterflies (Lepidoptera: Papilionidae)

The environmentally cued production of cryptic green/yellow or brown/melanized pupae is widespread in butterflies, occurring in the Nymphalidae, Pieridae, and the Papilionidae subfamily Papilioninae. The dimorphism is controlled by the hormone pupal melanization reducing factor (PMRF). In the nymphalid Inachis io dibutryl cAMP mimics PMRF, and inhibits pupal melanization. However, in the papilionid Papilio polyxenes PMRF stimulates browning, suggesting that the control of pupal color by PMRF has evolved independently in the swallowtail and nymphalid-pierid lineages. We examined this hypothesis by using ligatures to prevent hormone release in five species representing three Papilioninae tribes. One species, Papilio glaucus, produces only brown pupae. Ligatures resulted in green cuticle posterior to the ligature in all five swallowtail species, including P. glaucus, suggesting that the mode of action of PMRF is the same in the three tribes. We also found that in P. polyxenes injections of dibutryl cAMP into prepupal larvae mimic the effect of PMRF, by causing dose-dependent pupal browning. Our results support the hypothesis that the control of pupal color by PMRF has evolved independently in the two lineages. The observation that green pupal color can be induced in P. glaucus by ligature indicates that environmentally cued pupal color could evolve by facultative inhibition of PMRF release.     

Using 3D finite element models verified the importance of callus material and microstructure in biomechanics restoration during bone defect repair

Background: There is lack of further observations on the microstructure and material property of callus during bone defect healing and the relationships between callus properties and the mechanical strength. Methods: Femur bone defect model was created in rabbits and harvested CT data to reconstruct finite element models at 1 and 2 months. Three types of assumed finite element models were compared to study the callus properties, which assumed the material elastic property as heterogeneous (R-model), homogenous (H-model) or did not change from 1 to 2 months (U-model). Results: The apparent elastic moduli increased at 2 months (from 355.58 ± 132.67 to 1139.30 ± 967.43 MPa) in R-models. But there was no significant difference in apparent elastic moduli between R-models (355.58 ± 132.67 and 1139.30 ± 967.43 MPa) and H-models (344.79 ± 138.73 and 1001.52 ± 692.12 MPa) in 1 and 2 months. A significant difference of apparent elastic moduli was found between the R-model (1139.30 ± 967.43 MPa) and U-model group (207.15 ± 64.60 MPa) in 2 months. Conclusions: This study showed that the callus structure stability remodeled overtime to achieve a more effective structure, while the material quality of callus tissue is a very important factor for callus strength. At the meantime, this study showed an evidence that the material heterogeneity maybe not as important as it is in bone fracture model.     

A Batesian mimic and its model share color production mechanisms

Batesian mimics are harmless prey species that resemble dangerous ones (models),and thus receive protection from predators.How such adaptive resemblances evolve is a classical problem in evolutionary biology.Mimicry is typically thought to be difficult to evolve,especially if the model and mimic produce the convergent phenotype through different proximate mechanisms.However,mimicry may evolve more readily if mimic and model share similar pathways for producing the convergent phenotype.In such cases,these pathways can be co-opted in ancestral mimic populations to produce high-fidelity mimicry without the need for major evolutionary innovations.Here,we show that a Batesian mimic,the scarlet kingsnake Lampropettis elapsoides,produces its coloration using the same physiological mechanisms as does its model,the eastern coral snake Micrurus fulvius.Therefore,precise color mimicry may have been able to evolve easily in this system.Generally,we know relatively little about the proximate mechanisms underlying mimicry.     

Things that go bump in the night: evolutionary interactions between cephalopods and cetaceans in the tertiary

Echolocation has evolved independently in several vertebrate groups, and hypotheses about the origin of echolocation in these groups often invoke abiotic mechanisms driving morphological evolution. In bats, for example, the ecological setting associated with the origin of echolocation has been linked to global warming during the Palaeocene–Eocene; similarly, the origin of toothed whales (odontocetes) has been broadly correlated with the establishment of the circum-Antarctic current. These scenarios, and the adaptational hypotheses for the evolution of echolocation with which they are associated, neglect a consideration of possible biotic mechanisms. Here we propose that the origin of echolocation in odontocetes was initially an adaptation for nocturnal epipelagic feeding – primarily on diel migrating cephalopods. We test this hypothesis using data on the temporal, geographical, and water column distributions of odontocetes and cephalopods, and other global events from their respective tertiary histories. From this analysis, we suggest that echolocation in early odontocetes aided nocturnal feeding on cephalopods and other prey items, and that this early system was exapted for deep diving and hunting at depths below the photic zone where abundant cephalopod resources were available 24 h a day. This scenario extends to the evolution of other cephalopod feeding (teuthophagous) marine vertebrates such as pinnipeds and Mesozoic marine reptiles.     

Gametophytic simplicity in Laurasian and Gondwanan Polytrichopsida — the phylogeny and taxonomy of the Oligotrichum morphology

Abstract

Phylogenetic analyses have largely resolved generic and higher level relationships within the Polytrichopsida, enabling polarisation of characters and the identification of macro-evolutionary trends. Topologies show strong geographic patterning, with major groups having predominantly Northern or Southern Hemisphere distributions and some general morphologies having arisen independently on either side of the equator. While most cases of apparent convergence have been taxonomically visible due to sufficient higher-level characters being present to distinguish unrelated genera, convergent reduction may have resulted in conflation of similar gametophytic morphologies in classification. We present further evidence for the polyphyly of Oligotrichum DC. as currently circumscribed, showing how this morphology has probably arisen through reduction on multiple occasions to produce distinct lineages that have lacked taxonomic identity. We present a preliminary arrangement of the species currently recognised in Oligotrichum, accommodating selected Southern Hemisphere taxa in Itatiella G.L.Sm., and combining Atrichopsis compressa (Hook.f. & Wilson) G.L.Sm. and Oligotrichum tenuirostre (Hook.) A.Jaeger under Notoligotrichum G.L.Sm. For several species that clearly do not belong in Oligotrichum but remain of ambiguous affinity to other genera we avoid making new combinations, as ongoing combined molecular and morphological studies have considerable potential to elucidate their relationships in the near future.