A core‐transient framework for trait‐based community ecology: an example from a tropical tree seedling community

Trait‐based studies in community ecology have generally focused on the community as a unit where all species occur due to stochasticity, determinism or some mixture of the two. However, the processes governing population dynamics may vary greatly among species. We propose a core‐transient framework for trait‐based community studies where a core group of species has a strong link to the local environment while transient species have weaker responses to the environment. Consistent with the expectations of the framework, we found that common species exhibit clear linkages between performance and their environment and traits while rare species tend to have weaker or non‐significant relationships. Ultimately, trait‐based ecology should move beyond applying a set of processes to a community as a whole and towards quantifying inter‐specific variation in the drivers of population dynamics that ultimately scale up to determine community structure.     

Beyond hectares: four principles to guide reforestation in the context of tropical forest and landscape restoration

New climate change agreements emerging from the 21st Conference of the Parties and ambitious international commitments to implement forest and landscape restoration (FLR) are generating unprecedented political awareness and financial mobilization to restore forests at large scales on deforested or degraded land. Restoration interventions aim to increase functionality and resilience of landscapes, conserve biodiversity, store carbon, and mitigate effects of global climate change. We propose four principles to guide tree planting schemes focused on carbon storage and commercial forestry in the tropics in the context of FLR. These principles support activities and land uses that increase tree cover in human‐modified landscapes, while also achieving positive socioecological outcomes at local scales, in an appropriate contextualization: (1) restoration interventions should enhance and diversify local livelihoods; (2) afforestation should not replace native tropical grasslands or savanna ecosystems; (3) reforestation approaches should promote landscape heterogeneity and biological diversity; and (4) residual carbon stocks should be quantitatively and qualitatively distinguished from newly established carbon stocks. The emerging global restoration movement and its growing international support provide strong momentum for increasing tree and forest cover in mosaic landscapes. The proposed principles help to establish a platform for FLR implementation and monitoring based on a broad set of socioenvironmental benefits including, but not solely restricted, to carbon mitigation and wood production.     

利用DNA条形码技术识别植物物种

DNA条形码技术能够快速、准确地识别物种,对于开展基础性的分类学研究和应用性的生物多样性研究极为重要.本文对鼎湖山20 hm²大样地183个植物物种进行DNA条形码测序.结果表明： 单个条形码片段时, psbA-trnH的综合成功率最高(75%),其次是matK(70%)和rbcL(56%);片段组合时,matK+rbcL+psbA-trnH三片段组合的物种水平识别率在87%以上,随后是matK+psbA-trnH(85%)、rbcL+psbA-trnH(83%)和matK+rbcL(81%).综合了亚热带波多黎各的LFDP样地(143个种)和热带巴拿马的BCI样地(296个种)以及圭亚那的Nouragues样地(254个种)3个森林类型的研究结果,评价DNA条形码各片段在4个森林样地的通用性.在热带和亚热带地区的森林样地中,各片段测序成功率分别为rbcL(93%,95.1%)、psbA-trnH(91.5%,94.6%)和matK(68.5%,79.7%).在植物类群水平上,核心条形码片段matK+rbcL组合的物种准确识别率不高,只在局部群落中表现较为理想;而三位点DNA条形码片段组合在热带和亚热带森林样地中综合成功率可达84%和90%.     

Improving Planting Stocks for the Brazilian Atlantic Forest Restoration through Community‐Based Seed Harvesting Strategies

High‐diversity reforestation can help jumpstart tropical forest restoration, but obtaining viable seedlings is a major constraint: if nurseries do not offer them, it is hard to plant all the species one would like. From 2007 to 2009, we investigated five different seed acquisition strategies employed by a well‐established tree nursery in southeastern Brazil, namely (1) in‐house seed harvesters; (2) hiring a professional harvester; (3) amateur seed harvesters; or (4) a seed production cooperative, as well as (5) participating in a seed exchange program. In addition, we evaluated two strategies not dependent on seeds: harvesting seedlings from native tree species found regenerating under Eucalyptus plantations, and in a native forest remnant. A total of 344 native tree and shrub species were collected as seeds or seedlings, including 2,465 seed lots. Among these, a subset of 120 species was obtained through seed harvesting in each year. Overall, combining several strategies for obtaining planting stocks was an effective way to increase species richness, representation of some functional groups (dispersal syndromes, planting group, and shade tolerance), and genetic diversity of seedlings produced in forest tree nurseries. Such outcomes are greatly desirable to support high‐diversity reforestation as part of tropical forest restoration. In addition, community‐based seed harvesting strategies fostered greater socioeconomic integration of traditional communities in restoration projects and programs, which is an important bottleneck for the advance of ecological restoration, especially in developing countries. Finally, we discuss some of the limitations of the various strategies for obtaining planting stocks and the way forward for their improvement.     

海南岛坝王岭热带天然要植物物种多样性研究

采用植物群落学和植物种群学的研究方法,从数量和质量 特征两个方面研究了海南岛坝王岭热带天然林的植物物种多样性。结果表明：⑴该地区不同植物群落的优势种类组成差别较大,彼此之间的物种相似性水平低;⑵相对于低地雨林而言,该地区的山地雨林物种数量较多,物种均匀度较高,主要优势种的优势程度较弱;⑶在优先考虑物种稀有性的前提下,根据各物物种在群落中所处的位置及其分布情况,可将该地区的植物物种分为珍稀濒危种、特     

A trait‐based trade‐off between growth and mortality: evidence from 15 tropical tree species using size‐specific relative growth rates

A life‐history trade‐off between low mortality in the dark and rapid growth in the light is one of the most widely accepted mechanisms underlying plant ecological strategies in tropical forests. Differences in plant functional traits are thought to underlie these distinct ecological strategies; however, very few studies have shown relationships between functional traits and demographic rates within a functional group. We present 8 years of growth and mortality data from saplings of 15 species of Dipterocarpaceae planted into logged‐over forest in Malaysian Borneo, and the relationships between these demographic rates and four key functional traits: wood density, specific leaf area (SLA), seed mass, and leaf C:N ratio. Species‐specific differences in growth rates were separated from seedling size effects by fitting nonlinear mixed‐effects models, to repeated measurements taken on individuals at multiple time points. Mortality data were analyzed using binary logistic regressions in a mixed‐effects models framework. Growth increased and mortality decreased with increasing light availability. Species differed in both their growth and mortality rates, yet there was little evidence for a statistical interaction between species and light for either response. There was a positive relationship between growth rate and the predicted probability of mortality regardless of light environment, suggesting that this relationship may be driven by a general trade‐off between traits that maximize growth and traits that minimize mortality, rather than through differential species responses to light. Our results indicate that wood density is an important trait that indicates both the ability of species to grow and resistance to mortality, but no other trait was correlated with either growth or mortality. Therefore, the growth mortality trade‐off among species of dipterocarp appears to be general in being independent of species crossovers in performance in different light environments.     

Seed Menus: An integrated decision‐support framework for native plant restoration in the Mojave Desert

The combination of ecosystem stressors, rapid climate change, and increasing landscape‐scale development has necessitated active restoration across large tracts of disturbed habitats in the arid southwestern United States. In this context, programmatic directives such as the National Seed Strategy for Rehabilitation and Restoration have increasingly emphasized improved restoration practices that promote resilient, diverse plant communities, and enhance native seed reserves. While decision‐support tools have been implemented to support genetic diversity by guiding seed transfer decisions based on patterns in local adaptation, less emphasis has been placed on identifying priority seed mixes composed of native species assemblages. Well‐designed seed mixes can provide foundational ecosystem services including resilience to disturbance, resistance to invasive species, plant canopy structure to facilitate natural seedling recruitment, and habitat to support wildlife and pollinator communities. Drawing from a newly developed dataset of species distribution models for priority native plant taxa in the Mojave Desert, we created a novel decision support tool by pairing spatial predictions of species habitat with a database of key species traits including life history, flowering characteristics, pollinator relationships, and propagation methods. This publicly available web application, Mojave Seed Menus, helps restoration practitioners generate customized seed mixes for native plant restoration in the Mojave Desert based on project locations. Our application forms part of an integrated Mojave Desert restoration program designed to help practitioners identify species to include in local seed mixes and nursery stock development while accounting for local adaptation by identifying appropriate seed source locations from key restoration species.     

A novel index to aid in prioritizing habitats for site‐based conservation

Funding biodiversity conservation strategies are usually minimal, thus prioritizing habitats at high risk should be conducted. We developed and tested a conservation priority index (CPI) that ranks habitats to aid in prioritizing them for conservation. We tested the index using 1897 fish species from 273 African inland lakes and 34 countries. In the index, lake surface area, rarity, and their International Union for Conservation of Nature (IUCN) Red List status were incorporated. We retrieved data from the Global Biodiversity Information Facility (GBIF) and IUCN data repositories. Lake Nyasa had the highest species richness (424), followed by Tanganyika (391), Nokoué (246), Victoria (216), and Ahémé (216). However, lakes Otjikoto and Giunas had the highest CPI of 137.2 and 52.1, respectively. Lakes were grouped into high priority (CPI > 0.5; n = 56) and low priority (CPI < 0.5; n = 217). The median surface area between priority classes was significantly different (W = 11,768, p < .05, effect size = 0.65). Prediction accuracy of Random Forest (RF) and eXtreme Gradient Boosting (XGBoost) for priority classes were 0.912 and 0.954, respectively. Both models exhibited lake surface area as the variable with the highest importance. CPI generally increased with a decrease in lake surface area. This was attributed to less ecological substitutability and higher exposure levels of anthropogenic stressors such as pollution to a species in smaller lakes. Also, the highest species richness per unit area was recorded for high‐priority lakes. Thus, smaller habitats or lakes may be prioritized for conservation although larger waterbodies or habitats should not be ignored. The index can be customized to local, regional, and international scales as well as marine and terrestrial habitats.     

Plant biodiversity inventory and conservation of two tropical dry evergreen forests on the Coromandel coast, south India

Species diversity, population structure, abundance and dispersion patterns of all woody plants 10cm gbh were inventoried in two 1-ha plots of tropical dry evergreen (sacred grove or temple) forests at Kuzhanthaikuppam (KK) and Thirumanikkuzhi (TM) on the Coromandel coast of south India. Site KK is a stunted forest (average tree height ca 6 m) and TM a tall forest (average tree height ca 10 m). A total of 54 species (in 47 genera and 31 families) were recorded. Species richness and stand density were 42 and 38 species and 1367 and 974 individuals ha–1 respectively for the sites KK and TM. About 50% of the total species were common to both the sites. Site TM is twofold more voluminous (basal area 29.48 m2 ha–1) than KK (basal area 15.44 m2 ha–1). Nearly one third of the individuals are multi-stemmed in the low-statured site KK whereas one fourth of the tree density is multi-stemmed in TM. Species abundance pattern varied between the two sites. The abundance of three species in KK and two species in TM is pronounced. Memecylon umbellatum, the most abundant species contributing to one third of total stand density in KK, is least represented in TM. Species richness, density and diversity indices decreased with increasing girth threshold. Most species exhibited clumped dispersion of individuals both at 0.25 and 1-ha scales. Population structure for girth frequency is an expanding one for both the sites, except for basal area distribution in KK. Variations in plant diversity and abundance are related to site attributes and human impacts. In the light of habitat uniqueness, species richness and sacred grove status, the need for conservation is emphasized.     

Trait‐based analysis of decline in plant species ranges during the 20th century: a regional comparison between the UK and Estonia

Although the distribution ranges and abundance of many plant species have declined dramatically in recent decades, detailed analysis of these changes and their cause have only become possible following the publication of second‐ and third‐generation national distribution atlases. Decline can now be compared both between species and in different parts of species' ranges. We extracted data from distribution atlases to compare range persistence of 736 plant species common to both the UK and Estonia between survey periods encompassing almost the same years (1969 and 1999 in the UK and 1970 and 2004 in Estonia). We determined which traits were most closely associated with variation in species persistence, whether these were the same in each country, and the extent to which they explained differences in persistence between the countries. Mean range size declined less in Estonia than in the UK (24.3% vs. 30.3%). One‐third of species in Estonia (239) maintained >90% of their distribution range compared with one‐fifth (141) in the UK. In Estonia, 99 species lost >50% of their range compared with 127 species in the UK. Persistence was very positively related to original range in both countries. Major differences in species persistence between the studied countries were primarily determined by biogeographic (affiliation to floristic element) and ecoevolutionary (plant strategy) factors. In contrast, within‐country persistence was most strongly determined by tolerance of anthropogenic activities. Decline of species in the families Orchidaceae and Potamogetonaceae was significantly greater in the UK than in Estonia. Almost all of the 736 common and native European plant species in our study are currently declining in their range due to pressure from anthropogenic activities. Those species with low tolerance of human activity, with biotic pollination vectors and in the families referred to above are the most vulnerable, especially where human population density is high.     

A trait‐based approach reveals the feeding selectivity of a small endangered Mediterranean fish

Functional traits are growing in popularity in modern ecology, but feeding studies remain primarily rooted in a taxonomic‐based perspective. However, consumers do not have any reason to select their prey using a taxonomic criterion, and prey assemblages are variable in space and time, which makes taxon‐based studies assemblage‐specific. To illustrate the benefits of the trait‐based approach to assessing food choice, we studied the feeding ecology of the endangered freshwater fish Barbus meridionalis. We hypothesized that B. meridionalis is a selective predator which food choice depends on several prey morphological and behavioral traits, and thus, its top‐down pressure may lead to changes in the functional composition of in‐stream macroinvertebrate communities. Feeding selectivity was inferred by comparing taxonomic and functional composition (13 traits) between ingested and free‐living potential prey using the Jacob's electivity index. Our results showed that the fish diet was influenced by 10 of the 13 traits tested. Barbus meridionalis preferred prey with a potential size of 5–10 mm, with a medium–high drift tendency, and that drift during daylight. Potential prey with no body flexibility, conical shape, concealment traits (presence of nets and/or cases, or patterned coloration), and high aggregation tendency had a low predation risk. Similarly, surface swimmers and interstitial taxa were low vulnerable to predation. Feeding selectivity altered the functional composition of the macroinvertebrate communities. Fish absence favored taxa with weak aggregation tendency, weak flexibility, and a relatively large size (10–20 mm of potential size). Besides, predatory invertebrates may increase in fish absence. In conclusion, our study shows that the incorporation of the trait‐based approach in diet studies is a promising avenue to improve our mechanistic understanding of predator–prey interactions and to help predict the ecological outcomes of predator invasions and extinctions.     

Plants for nitrogen management in riparian zones: A proposed trait‐based framework to select effective species

Restoring plants to the riparian zone is regarded as management best practice in river restoration and has the potential to reduce the impact of nitrogen (N) pollution on aquatic organisms and improve water quality for human use. Plant characteristics and the interplay of hydrology and biogeochemistry control N retention in the riparian zone. The balance between processes such as denitrification and plant assimilation determines riparian N retention. Plant traits are likely to mediate these N removal processes through variations in root form, growth character, foliage production (quantity, quality and rate of return to the soil) and by altering conditions in the rhizosphere soil. Vegetation can slow N transfer via direct plant uptake of N (during periods of rapid vegetation growth) and changes induced to soil hydrology, nutrient cycling and microbial activity, principally denitrification. Few studies have focused on species‐dependent effects on N movement through soil and across boundaries. We propose a new framework, based on a literature review of plant traits with respect to N cycling, which can be used to select plant species with traits likely to maximise N removal during transport through the riparian zone. In the proposed framework, inter‐specific differences in traits known to influence N mobility: root form, growth rate, foliar characteristics and rhizosphere processes, are used to describe species’ potential impact on N removal. Plant trait data may be drawn from studies outside the riparian zone; for example forest ecology, horticulture or forestry research, and candidate species are scored to predict N removal efficiency. We apply the framework to New Zealand's native riparian plant assemblages to demonstrate the trait‐based approach. This framework can guide restoration management decisions and investment in riparian revegetation in a manner that is not restricted to geographically specific or well‐studied species.     

A pre‐adaptive approach for tropical forest restoration during climate change using naturally occurring genetic variation in response to water limitation

Effective reforestation of degraded tropical forests depends on selecting planting material suited to the stressful environments typical at restoration sites that can be exacerbated by increased duration and intensity of dry spells expected with climate change. While reforestation efforts in nontropical systems are incorporating drought‐adapted genotypes into restoration programs to cope with drier conditions, such approaches have not been tested or implemented in tropical forests. As the first effort to examine genetic variation in plant response to drought in a tropical wet forest, we established a watering experiment using five replicated maternal lines (i.e. seedlings from different maternal trees) of five dipterocarp species native to Borneo. Apart from the expected species level variation in growth and herbivory (3‐fold variation in both cases), we also found intraspecific variation so that growth in some cases varied 2‐fold, and herbivory 3‐fold, among genetically different maternal lines. In two species we found that among‐maternal line variation in growth rate was negatively correlated with tolerance to water limitation, that is, the maternal lines that performed the best in the high water treatment lost proportionally more of their growth during water limitation. We argue that selection for tolerance to future drier conditions is not only likely to impact population genetics of entire forests, but likely extends from forest trees to the communities of canopy arthropods associated with these trees. In tropical reforestation efforts where increased drought is predicted from climate change, including plant material resilient to drier conditions may improve restoration effectiveness.     

Ungulates increase forest plant species richness to the benefit of non‐forest specialists

Large wild ungulates are a major biotic factor shaping plant communities. They influence species abundance and occurrence directly by herbivory and plant dispersal, or indirectly by modifying plant‐plant interactions and through soil disturbance. In forest ecosystems, researchers’ attention has been mainly focused on deer overabundance. Far less is known about the effects on understory plant dynamics and diversity of wild ungulates where their abundance is maintained at lower levels to mitigate impacts on tree regeneration. We used vegetation data collected over 10 years on 82 pairs of exclosure (excluding ungulates) and control plots located in a nation‐wide forest monitoring network (Renecofor). We report the effects of ungulate exclusion on (i) plant species richness and ecological characteristics, (ii) and cover percentage of herbaceous and shrub layers. We also analyzed the response of these variables along gradients of ungulate abundance, based on hunting statistics, for wild boar (Sus scrofa), red deer (Cervus elaphus) and roe deer (Capreolus capreolus). Outside the exclosures, forest ungulates maintained higher species richness in the herbaceous layer (+15%), while the shrub layer was 17% less rich, and the plant communities became more light‐demanding. Inside the exclosures, shrub cover increased, often to the benefit of bramble (Rubus fruticosus agg.). Ungulates tend to favour ruderal, hemerobic, epizoochorous and non‐forest species. Among plots, the magnitude of vegetation changes was proportional to deer abundance. We conclude that ungulates, through the control of the shrub layer, indirectly increase herbaceous plant species richness by increasing light reaching the ground. However, this increase is detrimental to the peculiarity of forest plant communities and contributes to a landscape‐level biotic homogenization. Even at population density levels considered to be harmless for overall plant species richness, ungulates remain a conservation issue for plant community composition.