反义核酸药物的研究现状

反义药物以其合理设计药物的可能性和精确的特异性广泛吸引了人们的注意,但反义药物的研究并非如人们最初预想的那样简单。本文从其特异性,稳定性,透过靶细胞的能力,作用强度,活性判定,给药途径,安全性和毒性,生产成本等诸方面对反义药物的研究现状,现存问题进行了综述。相信伴随这些问题的解决,反义药物很可能成为药典的一部分,给疾病的治疗带来益处。     

Conformational studies of antisense DNA by PFG NMR

Pulsed field gradient diffusion constant measurements were used to resolve the ambiguity in determining the conformational states of single-stranded DNA dodecanucleotides (d1s, d4s and d5s). For d1s and d5s, because of the spectral symmetry conventional NMR analyses cannot differentiate whether they are hairpins or homo-duplexes. However, the diffusion constants of these sequences at 300 K are 1.4 times greater than those of the comparison complementary duplexes. This result agrees well with what is expected for D_hairpin>/D_duplex based on classic liquid-phase translational diffusion models and the Einstein–Stokes equation, confirming that d1s and d5s form hairpins. d4s did not show a structured spectral pattern, but its diffusion constant measurement suggests that this sequence may not be a random coil. The DNA sequences studied contain chemically modified backbone linkages and are potential antisense agents for gene regulation. The knowledge of their diffusion constants, in combination with conventional NMR analysis and other biophysical spectroscopic measurements, provides new insights into the relationships of chemical structure and conformational preference of antisense oligonucleotides and their analogs.     

Current status of fertility control methods in India

Approximately 48.2% of couples of 15 to 49 years of age practice family planning methods in India. Female sterilization accounts for 34.2%, with male sterilization declining from 3·4% in 1992–93 to 1·9% in 1998–99. Use of the condom increased to 3·1% from 2·4%. There is an urgent need for research to develop new contraceptive modalities especially for men and also for women and to make existing methods more safe, affordable and acceptable. Current efforts in India to develop a male contraceptive are mainly directed towards (i) development of antispermatogenic agents to suppress sperm production, (ii) prevention of sperm maturation, (iii) prevention of sperm transport through vas deferens or rendering these sperm infertile and (iv) prevention of sperm deposition. Research work in the field of prevention of sperm transport through vas deferens has made significant advances. Styrene maleic anhydride (SMA) disturbed the electrical charge of spermatozoa leading to acrosome rupture and consequent loss in fertilizing ability of sperm. A multicentre phase-III clinical trial using SMA is continuing and it is hoped that the SMA approach would be available in the near future as an indigenously developed injectable intra-vasal male contraceptive. The safety and efficacy of available oral contraceptives were evaluated. An indigenously developed oral contraceptive ‘Centchorman’, which is a nonsteroidal, weakly estrogenic but potently antiestrogenic, was found to be safe and effective and is now being marketed in India since 1991 as a ‘once a week’ pill. Cyclofem and Mesigyna have been recommended as injectable contraceptives with proper counselling and service delivery by Indian studies. It has been recommended that these injectable contraceptives be added to the existing range of contraceptive methods available in the National Family Planning Programme. Based on the Indian studies CuT 200 was also recommended. Studies have indicated the advantage of intrauterine devices (IUD); they are long acting, relatively easily removed and fertility returns rapidly after their removal. Recent studies have recommended CuT 200 for use up to 5 years. The combination of some plant products i.e.Embelia ribes, Borax andPiper longum has been found to be safe and effective as a female contraceptive and the results of phase-I clinical trials are encouraging. Research work is going on in the country in various areas with special reference to hormonal contraceptive — a three monthly injectable contraceptive, immuno-contraceptives, antiprogestins, etc.     

中国非人灵长类物种的行为偏侧研究进展

行为偏侧是指动物进行某一行为时偏好使用某一侧肢体或感觉器官。行为偏侧作为脑偏侧所对应的可观测的行为指标,是动物行为适应性进化的代表性特征之一,它在个体水平上影响着个体适合度,在群体水平上是社会性物种的一种进化稳定策略,具有重要的生态和进化意义。中国非人灵长类资源丰富,而中国非人灵长类的行为偏侧研究起步较晚,始于二十世纪八十年代。本文系统归纳中国非人灵长类物种的行为偏侧研究进展,并基于当前研究现状,为今后发展提出积极建议。     

Current status of genome-wide association studies in cancer

Genome-wide association studies in cancer have already identified over 150 regions associated with two dozen specific cancers. Already, a handful of multi-cancer susceptibility regions have been uncovered, providing new insights into perhaps common mechanisms of carcinogenesis. For each new susceptibility allele, investigators now face the arduous task of interrogating each region beginning with fine mapping prior to pursuing the biological basis for the direct association of one or more variants. It appears that there may be a significant number of common alleles that contribute to the heritability of a specific cancer. Since each region confers a small contribution to the risk for cancer, it is daunting to consider any single nucleotide polymorphism (SNP) as a clinical test. Since the complex genomic architecture of each cancer differs, additional genotyping and sequence analysis will be required to comprehensively catalog susceptibility alleles followed by the formidable task of understanding the interactions between genetic regions as well as the environment. It will be critical to assess the applicability of genetic tests in specific clinical settings, such as when to perform screening tests with calculable risks (e.g., biopsies or chemoprevention), before incorporating SNPs into clinical practice. To advance the current genomic observations to the clinical venue, new studies will need to be designed to validate the utility of known genetic variants in assessing risk for cancer as well as its outcomes.     

冬虫夏草研究的新进展

冬虫夏草是冬虫夏草菌寄生于虫草蝙蝠蛾（Hepialus armoricanus）幼虫体后发育成的真菌子座和充满菌丝的僵死幼虫的复合体,与人参、鹿茸齐名,为我国三大珍贵滋补防病中药材。冬虫草源流于我国,主产于四川、青海、西藏和甘肃等省,从冬虫夏草的基本概况、生物学特性、理化成分、人工培育现状及其应用前景等进行了综述,以期推动冬虫夏草资源的研究和开发利用进程。     

植物泛基因组研究进展与展望

随着测序技术和生物信息学的快速发展,已有数百种植物的参考基因组被测序,极大地促进了植物功能基因组学、进化遗传学和分子育种学等领域的蓬勃发展。然而,随着研究的深入,越来越多的证据表明来自单一个体的参考基因组远不能代表整个物种的遗传多样性,由此催生了泛基因组(Pan-genome)的概念,并已成功应用于20余种植物的研究,揭示了丰富的遗传变异,发掘了大量的新基因,深化了对相关物种遗传多样性的认识。本文简述了泛基因组的概念、构建方法以及在当前植物研究中的应用现状,最后对其未来发展进行了展望。     

全基因组基因-基因相互作用研究现状

复杂疾病目前正在全球范围流行, 极大地影响人类的健康。研究发现, 复杂疾病的性状受到多个位点的相互作用影响。目前的全基因组关联分析(Genome-wide association study, GWAS)仅仅解析单个SNP位点对疾病易感性的贡献, 单纯依靠这一种策略并不能在寻找复杂疾病的病因上得到根本性的突破。基因-基因相互作用可能是复杂疾病致病的主要因素之一。针对这一点, 科学家已经提出了一些检验基因相互作用的算法, 包括惩罚logistic回归模型、多因子降维(Multifactor dimensional reduction)、集合关联法(Set-association approach)、贝叶斯网络(Bayesian networks)、随机森林法等。文章首先对目前这些方法做了综述, 并指出了其中的不足, 包括计算复杂度太高、假设驱动、数据会过度拟合、对低维数据不敏感等, 进而简述了一种由笔者所在实验室开发的基于GPU的研究基因相互作用的算法, 该算法复杂度低, 不需要任何假设, 没有边际效应, 有很好的稳定性, 速度快, 适用于进行全基因组范围内的基因-基因相互作用计算。     

Current status of theoretical studies on essential genes in microbes

Essential genes are indispensable for the survival of an organism in optimal conditions. Recently, study on essential gene is becoming a hot topic of microbiology, genomics, and bioinformatics. This paper described the experiments that determined essential genes in some microbes and the theoretical researches on essential genes were reviewed. The major content contained comparison of essential genes and non-essential genes based on information on evolutionary conservation and sequence composition, and in silico prediction of essential genes, and analysis of the chromosomal distributions of essential genes. Finally, related progresses were concluded and the open problems were pointed out.     

微生物必需基因的理论研究现状

必需基因是生物体在优化条件下生长不可缺少的基因。近年来,对必需基因的研究已逐渐成为微生物学、基因组学和生物信息学研究领域的热点。文章首先描述了已经实验确定必需基因的微生物物种。然后,对必需基因的理论研究现状进行了综述。从进化保守性和序列组成两方面比较必需基因和非必需基因的差异,到必需基因的理论预测及必需基因在染色体上的分布等。最后,对这一重要研究领域的进展进行了总结和展望。     

Current status of biodosimetry based on standard cytogenetic methods

Knowledge about dose levels in radiation protection is an important step for risk assessment. However, in most cases of real or suspected accidental exposures to ionizing radiation (IR), physical dosimetry cannot be performed for retrospective estimates. In such situations, biological dosimetry has been proposed as an alternative for investigation. Briefly, biodosimetry can be defined as individual dose evaluation based on biological endpoints induced by IR (so-called biomarkers). The relationship between biological endpoints and absorbed dose is not always straightforward: nausea, vomiting and diarrhoea, for example, are the most well-known biological effects of individual irradiation, but a precise correlation between those symptoms and absorbed dose is hardly achieved. The scoring of unstable chromosomal-type aberrations (such as dicentrics and rings) and micronuclei in mitogen-stimulated peripheral blood, up till today, has been the most extensively biodosimetry assay employed for such purposes. Dicentric assay is the gold standard in biodosimetry, since its presence is generally considered to be specific to radiation exposure; scoring of micronuclei (a kind of by-product of chromosomal damages) is easier and faster than that of dicentrics for dose assessment. In this context, the aim of this work is to present an overview on biodosimetry based on standard cytogenetic methods, highlighting its advantages and limitations as tool in monitoring of radiation workers’ doses or investigation into accidental exposures. Recent advances and perspectives are also briefly presented.     

工业生物技术中DNA合成发展现状及展望

DNA合成是生命科学领域的共性支撑技术和合成生物学的关键使能技术。以合成生物学为基础的工业生物技术持续快速发展,迫切需要更加便捷、经济、安全的DNA来源以满足其日益增长的大规模DNA合成需求。工业化DNA合成在通量、成本、速度等方面的优势日益凸显,有力推动了工业生物技术研发效率的提升和研发成本的下降。但是现有技术在生产过程中还存在着使用大量有机试剂、资源浪费等问题。随着DNA合成规模的持续快速提升,有毒化学品危害、成本负担、环境负担等问题日益突出。本文结合我们的工作实践,对工业生物技术中DNA合成需求、合成策略以及可持续发展面临的问题和解决方案研究进展进行探讨。     

鞘翅目昆虫核酸分子系统学研究现状

从研究对象、研究种类、研究内容等方面对鞘翅目Coleoptera核酸分子系统学研究的近况进行了总结和分析,研究中应用的技术主要有DNA序列分析、RELP技术、RAPD技术、AFLP技术、分子杂交技术和SSCD技术。并认为这些技术的应用对补充和完善传统分类方法,深入探讨各类群的分类地位和系统发育关系具有重要作用。     

Analysis of telomeric DNA: Current approaches and methods

Terminal parts of linear chromosomes in eukaryotes are represented by telomeric DNA and associated proteins. Length, sequence and structure are the major parameters of telomeric DNA. The present review describes a set of molecular, cellular and genetic methods used to study the parameters of telomeric DNA.