Fire, climate change and biodiversity in Amazonia: a Late-Holocene perspective

Fire is an important and arguably unnatural component of many wet Amazonian and Andean forest systems. Soil charcoal has been used to infer widespread human use of landscapes prior to European Conquest. An analysis of Amazonian soil carbon records reveals that the records have distinct spatial and temporal patterns, suggesting that either fires were only set in moderately seasonal areas of Amazonia or that strongly seasonal and aseasonal areas are undersampled. Synthesizing data from 300 charcoal records, an age–frequency diagram reveals peaks of fire apparently coinciding with some periods of very strong El Niño activity. However, the El Niño record does not always provide an accurate prediction of fire timing, and a better match is found in the record of insolation minima. After the time of European contact, fires became much scarcer within Amazonia. In both the Amazonia and the Andes, modern fire pattern is strongly allied to human activity. On the flank of the Andes, forests that have never burned are being eroded by fire spreading downslope from grasslands. Species of these same forests are being forced to migrate upslope due to warming and will encounter a firm artificial fire boundary of human activity.     

Phenological response to climate change in China: a meta‐analysis

The change in the phenology of plants or animals reflects the response of living systems to climate change. Numerous studies have reported a consistent earlier spring phenophases in many parts of middle and high latitudes reflecting increasing temperatures with the exception of China. A systematic analysis of Chinese phenological response could complement the assessment of climate change impact for the whole Northern Hemisphere. Here, we analyze 1263 phenological time series (1960–2011, with 20+ years data) of 112 species extracted from 48 studies across 145 sites in China. Taxonomic groups include trees, shrubs, herbs, birds, amphibians and insects. Results demonstrate that 90.8% of the spring/summer phenophases time series show earlier trends and 69.0% of the autumn phenophases records show later trends. For spring/summer phenophases, the mean advance across all the taxonomic groups was 2.75 days decade^?1 ranging between 2.11 and 6.11 days decade^?1 for insects and amphibians, respectively. Herbs and amphibians show significantly stronger advancement than trees, shrubs and insect. The response of phenophases of different taxonomic groups in autumn is more complex: trees, shrubs, herbs and insects show a delay between 1.93 and 4.84 days decade^?1, while other groups reveal an advancement ranging from 1.10 to 2.11 days decade^?1. For woody plants (including trees and shrubs), the stronger shifts toward earlier spring/summer were detected from the data series starting from more recent decades (1980s–2000s). The geographic factors (latitude, longitude and altitude) could only explain 9% and 3% of the overall variance in spring/summer and autumn phenological trends, respectively. The rate of change in spring/summer phenophase of woody plants (1960s–2000s) generally matches measured local warming across 49 sites in China (R = ?0.33, P < 0.05).     

Life in proto‐Amazonia: Middle Miocene mammals from the Fitzcarrald Arch (Peruvian Amazonia)

The Middle Miocene has been identified as a time of great diversification in modern lineages now distributed in tropical South America, and when basic archetypal traits defining Amazonia appear, including climatic humid conditions, basic floral physiognomy and phylogenetic composition of modern rainforests. Nonetheless, Middle Miocene localities in South America are poorly known, especially at low latitudes where only one species‐rich locality, La Venta in Colombia, has been extensively studied. The present contribution describes the mammal fauna of Fitzcarrald, a new Middle Miocene local fauna from western Amazonia in Peru. Fitzcarrald is correlated with the Laventan South American Land Mammal Age based on the presence of taxa defining the ‘Miocochilius assemblage zone’ in La Venta. The mammalian fauna of Fitzcarrald comprises 24 taxa among cingulates, folivores, astrapotheres, notoungulates, litopterns, rodents, odontocetes and a possible marsupial. At this time, tropical South America was characterized by the presence of the Pebas megawetland, a huge lacustrine complex that provided unique ecological and environmental conditions most likely isolating northern South America from southern South America. These isolating conditions might have come to an end with its disappearance in the Late Miocene and the establishment of the subsequent Acre system, the predecessor fluvial system of modern Amazonia. Results of faunistic similarity between Fitzcarrald and other Miocene faunas throughout South America support these scenarios. The Fitzcarrald mammal fauna exhibits first appearance datums and last appearance datums of various taxa, showing that tropical South America has played a crucial role in the evolutionary history and biogeography of major clades, and revealing a more complex biological history than previously proposed, based on the record from the southern cone of the continent.     

Drying as a primary hydrological determinant of biodiversity in river systems: a broad‐scale analysis

Determining and understanding relationships between biodiversity and hydrology is a critical goal in ecology, particularly given biodiversity in the freshwater realm is in crisis. Despite the prevalence of rivers experiencing natural drying disturbances (which we collectively refer to as intermittent rivers), and projections of increased frequency and duration of drying events, the importance of drying relative to other flow‐related determinants of river biodiversity remains understudied. We assessed the influence of drying on alpha‐ and beta‐diversity using discharge and macroinvertebrate data collated from Australia and southwest Europe over broad spatial and temporal scales, providing information on current and past drying events, and combining a wide variety of flow metrics. We found clear evidence that drying acts as a strong environmental filter and is a primary hydrological determinant of alpha‐diversity; even when considering both intermittent and perennial rivers, drying‐event conditions were its most important predictors. Macroinvertebrate richness declined with increasing durations of drying over the long‐term (Australia) and recent (Australia and southwest Europe) history of river discharge, and with decreasing predictability of event timing (Australia). Our analysis also revealed that: responses can be taxon specific due to variation in traits of resistance and resilience to drying; some taxa may respond just as or more strongly to variation in other discharge components (e.g. high‐ or low‐flow events) than to drying; and together these phenomena may result in differing community‐level responses within and across regions. Patterns of beta‐diversity across the wide biogeographical range of our study suggested that convergent and divergent niche‐selection processes may act in combination on aquatic communities of rivers experiencing drying disturbances. However, strong ability to disperse by flight (not by water) weakened beta‐diversity patterning among rivers. Our findings can be used to improve understanding of biodiversity organisation in disturbed systems, notably in those with dendritic features, including intermittent rivers.     

Terrestrial invertebrates inhabiting lowland river floodplains of Central Amazonia and Central Europe: a review

1. Amazonian terrestrial invertebrates produce high population densities during favourable periods and may suffer a drastic decrease during occasional floods and droughts. However, the monomodal, predictable flood pulse of the larger Amazonian rivers favours the development of morphological (respiratory organs, wing‐dimorphism), phenological (synchronization of life cycles, univoltine mode of life), physiological (flooding ability, gonad dormancy, alternating number of developmental stages), and behavioural adaptations (migration, temporal diving) with numerous interactions. 2. In lowlands of Central Europe, the flood pulse of large rivers is less predictable than in Central Amazonia and is superimposed by the seasonal light/temperature pulse (summer/winter regime). Some terrestrial invertebrates show physiological resistance against inundation or drought, phenologies fitting the normal annual rhythm of water level fluctuation (quiescence or diapause of eggs or adult invertebrates), high dispersal ability and migration. However, most species survive simply using a `risk strategy', combining high reproduction rates, dispersal and reimmigration following catastrophic events. 3. The diversity of species in terrestrial invertebrates is lower in lowland riverine ecosystems of Central Amazonia and Central Europe compared with the respective uplands because of flood stress in these systems. However, floodplains in Central Amazonia possess a greater number of endemic species in comparison with Central European floodplains because of long periods of fairly stable climatic conditions in comparison with large palaeoclimatic changes in Central Europe.     

Land cover change or land‐use intensification: simulating land system change with a global‐scale land change model

Land‐use change is both a cause and consequence of many biophysical and socioeconomic changes. The CLUMondo model provides an innovative approach for global land‐use change modeling to support integrated assessments. Demands for goods and services are, in the model, supplied by a variety of land systems that are characterized by their land cover mosaic, the agricultural management intensity, and livestock. Land system changes are simulated by the model, driven by regional demand for goods and influenced by local factors that either constrain or promote land system conversion. A characteristic of the new model is the endogenous simulation of intensification of agricultural management versus expansion of arable land, and urban versus rural settlements expansion based on land availability in the neighborhood of the location. Model results for the OECD Environmental Outlook scenario show that allocation of increased agricultural production by either management intensification or area expansion varies both among and within world regions, providing useful insight into the land sparing versus land sharing debate. The land system approach allows the inclusion of different types of demand for goods and services from the land system as a driving factor of land system change. Simulation results are compared to observed changes over the 1970–2000 period and projections of other global and regional land change models.     

Soil carbon stock change following afforestation in Northern Europe: a meta‐analysis

Northern Europe supports large soil organic carbon (SOC) pools and has been subjected to high frequency of land‐use changes during the past decades. However, this region has not been well represented in previous large‐scale syntheses of land‐use change effects on SOC, especially regarding effects of afforestation. Therefore, we conducted a meta‐analysis of SOC stock change following afforestation in Northern Europe. Response ratios were calculated for forest floors and mineral soils (0–10 cm and 0–20/30 cm layers) based on paired control (former land use) and afforested plots. We analyzed the influence of forest age, former land‐use, forest type, and soil textural class. Three major improvements were incorporated in the meta‐analysis: analysis of major interaction groups, evaluation of the influence of nonindependence between samples according to study design, and mass correction. Former land use was a major factor contributing to changes in SOC after afforestation. In former croplands, SOC change differed between soil layers and was significantly positive (20%) in the 0–10 cm layer. Afforestation of former grasslands had a small negative (nonsignificant) effect indicating limited SOC change following this land‐use change within the region. Forest floors enhanced the positive effects of afforestation on SOC, especially with conifers. Meta‐estimates calculated for the periods <30 years and >30 years since afforestation revealed a shift from initial loss to later gain of SOC. The interaction group analysis indicated that meta‐estimates in former land‐use, forest type, and soil textural class alone were either offset or enhanced when confounding effects among variable classes were considered. Furthermore, effect sizes were slightly overestimated if sample dependence was not accounted for and if no mass correction was performed. We conclude that significant SOC sequestration in Northern Europe occurs after afforestation of croplands and not grasslands, and changes are small within a 30‐year perspective.     

The impact of global climate change on tropical forest biodiversity in Amazonia

Aim To model long‐term trends in plant species distributions in response to predicted changes in global climate. Location Amazonia. Methods The impacts of expected global climate change on the potential and realized distributions of a representative sample of 69 individual Angiosperm species in Amazonia were simulated from 1990 to 2095. The climate trend followed the HADCM2GSa1 scenario, which assumes an annual 1% increase of atmospheric CO₂ content with effects mitigated by sulphate forcing. Potential distributions of species in one‐degree grid cells were modelled using a suitability index and rectilinear envelope based on bioclimate variables. Realized distributions were additionally limited by spatial contiguity with, and proximity to, known record sites. A size‐structured population model was simulated for each cell in the realized distributions to allow for lags in response to climate change, but dispersal was not included. Results In the resulting simulations, 43% of all species became non‐viable by 2095 because their potential distributions had changed drastically, but there was little change in the realized distributions of most species, owing to delays in population responses. Widely distributed species with high tolerance to environmental variation exhibited the least response to climate change, and species with narrow ranges and short generation times the greatest. Climate changed most in north‐east Amazonia while the best remaining conditions for lowland moist forest species were in western Amazonia. Main conclusions To maintain the greatest resilience of Amazonian biodiversity to climate change as modelled by HADCM2GSa1, highest priority should be given to strengthening and extending protected areas in western Amazonia that encompass lowland and montane forests.     

Display behaviour,social organization and vocal repertoire of Blue‐backed Manakin Chiroxiphia pareola napensis in northwest Amazonia

Members of the avian family Pipridae (manakins) have served as a model system for studies aimed at understanding cooperation among individuals, traits involved in sexual selection and the evolution of female preferences. These studies rely on a detailed natural history baseline, yet multiple manakin taxa remain unstudied, precluding comparative analyses and assessment of geographical variation. The Blue‐backed Manakin Chiroxiphia pareola is a widely distributed species with four recognized subspecies; however, most published information on display behaviour, social organization and vocalizations are derived from an island population of one subspecies, Chiroxiphia pareola atlantica. To describe the social organization and patterns of activity of the subspecies C. p. napensis, we studied a population in eastern Ecuador and collected data from seven display areas or leks within the Tiputini Biodiversity Station. We used focal observations, camera traps and automatic song recorders to collect information for the field seasons from January to March 2013 and video cameras from February to March 2014. Males were active most of the day with a peak in activity at noon. Display areas were occupied by one to five males, ranging from > 2 to > 18 years old. The vocal repertoire included duet song displays and a variety of calls. We provide sonograms for all six observed vocalizations, including two previously unrecorded vocalizations for the species, and comment on the possible behavioural context of each vocalization. We describe five distinct display elements and the dance display behaviour, and highlight differences relative to other species of the genus. The first part of the dance display involved cooperative dancing, whereas the second part was a solo display, usually performed by alpha males. Our work reveals some differences between C. p. napensis and C. p. atlantica, such as a possible aggressive interaction between males of different ages and hierarchical status that has not been reported before and the apparent absence of mechanical wing sounds in C. p. napensis. The data reported here help advance our knowledge of the evolution of display behaviour among manakins.     

The French 35-hour workweek: a wide-ranging social change

The reduction of the legal working week to 35 hours in France has generated wide-ranging social change. We examine the resulting changes in working-time patterns as well as their repercussions on the use of the time gained and on the quality of life and health. To compensate the reduction in the length of the working week, companies have modified the working-time patterns, by extending operation time (shiftwork, atypical schedules) and by matching the on-site workforce to production requirements (flexible working hours). They have sought to make more efficient use of working time: job intensification or job compression. The effects on the off-the-job life and health are linked to the shiftwork and atypical schedules designed to increase the company's operating time, and adjustments to the company's need for flexibilization impose working time/free time patterns that are at odds with biological rhythms and social life patterns. Changes to working-time patterns have unexpected consequences for work organization: heightened difficulties for the individual and the crew. These changes may generate a range of health problems related to overwork and stress. The way some companies have adapted may call into question the usefulness of work done by employees, thus damaging their social identity and mental well-being.     

Within‐group relatedness is correlated with colony‐level social structure and reproductive sharing in a social fish

In group‐living species, the degree of relatedness among group members often governs the extent of reproductive sharing, cooperation and conflict within a group. Kinship among group members can be shaped by the presence and location of neighbouring groups, as these provide dispersal or mating opportunities that can dilute kinship among current group members. Here, we assessed how within‐group relatedness varies with the density and position of neighbouring social groups in Neolamprologus pulcher, a colonial and group‐living cichlid fish. We used restriction site‐associated DNA sequencing (RADseq) methods to generate thousands of polymorphic SNPs. Relative to microsatellite data, RADseq data provided much tighter confidence intervals around our relatedness estimates. These data allowed us to document novel patterns of relatedness in relation to colony‐level social structure. First, the density of neighbouring groups was negatively correlated with relatedness between subordinates and dominant females within a group, but no such patterns were observed between subordinates and dominant males. Second, subordinates at the colony edge were less related to dominant males in their group than subordinates in the colony centre, suggesting a shorter breeding tenure for dominant males at the colony edge. Finally, subordinates who were closely related to their same‐sex dominant were more likely to reproduce, supporting some restraint models of reproductive skew. Collectively, these results demonstrate that within‐group relatedness is influenced by the broader social context, and variation between groups in the degree of relatedness between dominants and subordinates can be explained by both patterns of reproductive sharing and the nature of the social landscape.     

Role of social cognition in post‐traumatic stress disorder: A review and meta‐analysis

Social functioning is a key component of recovery after a potentially traumatic experience, and the buffering role of the social support in trauma resilience and recovery has been very well documented. Factors contributing to resilience and recovery are notable because although most people will experience a traumatic event during their lifetimes, only 6% to 10% are diagnosed with post‐traumatic stress disorder (PTSD). The relationship between an individual and their social environment is determined both by the quality of the social environment itself, and by the individual's perception and understanding of information conveyed by the other people around them. However, little research has considered the contribution of these internal social cognitive processes to PTSD risk or resilience. The current review draws on the existing literature on social cognitive functioning in trauma exposure and PTSD, identifying key questions and themes for future research. We utilized a meta‐analytic approach to assess the evidence for alterations in social cognition in PTSD, finding a consistent large deficit in social cognitive performance in PTSD groups relative to trauma‐exposed and healthy controls. We then reviewed the literature on the interaction of genes and the social environment, supporting the hypothesis that social cognitive deficits are a preexisting risk factor for PTSD. Finally, we reviewed relevant neuroimaging findings, which suggest that alterations in social cognition affect the perception of threat cues in PTSD. Overall, research on social cognition and PTSD is still emerging, but existing findings suggest this is an important and understudied area for the understanding of PTSD.     

The implication of irrigation in climate change impact assessment: a European‐wide study

This study evaluates the impacts of projected climate change on irrigation requirements and yields of six crops (winter wheat, winter barley, rapeseed, grain maize, potato, and sugar beet) in Europe. Furthermore, the uncertainty deriving from consideration of irrigation, CO₂ effects on crop growth and transpiration, and different climate change scenarios in climate change impact assessments is quantified. Net irrigation requirement (NIR) and yields of the six crops were simulated for a baseline (1982–2006) and three SRES scenarios (B1, B2 and A1B, 2040–2064) under rainfed and irrigated conditions, using a process‐based crop model, SIMPLACE . We found that projected climate change decreased NIR of the three winter crops in northern Europe (up to 81 mm), but increased NIR of all the six crops in the Mediterranean regions (up to 182 mm yr^?1). Climate change increased yields of the three winter crops and sugar beet in middle and northern regions (up to 36%), but decreased their yields in Mediterranean countries (up to 81%). Consideration of CO₂ effects can alter the direction of change in NIR for irrigated crops in the south and of yields for C3 crops in central and northern Europe. Constraining the model to rainfed conditions for spring crops led to a negative bias in simulating climate change impacts on yields (up to 44%), which was proportional to the irrigation ratio of the simulation unit. Impacts on NIR and yields were generally consistent across the three SRES scenarios for the majority of regions in Europe. We conclude that due to the magnitude of irrigation and CO₂ effects, they should both be considered in the simulation of climate change impacts on crop production and water availability, particularly for crops and regions with a high proportion of irrigated crop area.     

Rehabilitation of a Bauxite Tailing Substrate in Central Amazonia: The Effect of Litter and Seed Addition on Flood‐Prone Forest Restoration

Impacts of mining activity can be particularly difficult to remediate in wetland ecosystems subject to inundation pulses due to the reduced length of the plant growing season. We used a factorial experiment to test whether litter and seed addition could be used to increase the efficiency of ecological restoration on a flood‐prone forest (known as igapó) impacted by deposition of bauxite tailings. Our results clearly showed that the addition of litter collected from pristine igapó areas increased plant growth, seedling density, and seedling species richness. The increase in individual plant growth was echoed at the community level with higher leaf area index values on litter addition plots compared to controls. Litter addition can enhance reaccumulation of nutrient pools during successional development, which has been proposed as an important feature to ensure self‐sustainability of areas under restoration. The success of the seed addition treatment depended on the species used. Of the seven sown species, only Acosmium nitens (a leguminous nitrogen‐fixing species) showed high establishment. The introduction of nitrogen‐fixing species is also expected to build up the nitrogen pool in the system as has been reported for restoration programs in non‐inundated forests. These practices have the advantage, compared to direct fertilizing, of not causing eutrophication of water bodies when applied to flood‐prone vegetation.     

Impact of tropical land‐use change on soil organic carbon stocks – a meta‐analysis

Land‐use changes are the second largest source of human‐induced greenhouse gas emission, mainly due to deforestation in the tropics and subtropics. CO₂ emissions result from biomass and soil organic carbon (SOC) losses and may be offset with afforestation programs. However, the effect of land‐use changes on SOC is poorly quantified due to insufficient data quality (only SOC concentrations and no SOC stocks, shallow sampling depth) and representativeness. In a global meta‐analysis, 385 studies on land‐use change in the tropics were explored to estimate the SOC stock changes for all major land‐use change types. The highest SOC losses were caused by conversion of primary forest into cropland (?25%) and perennial crops (?30%) but forest conversion into grassland also reduced SOC stocks by 12%. Secondary forests stored less SOC than primary forests (?9%) underlining the importance of primary forests for C stores. SOC losses are partly reversible if agricultural land is afforested (+29%) or under cropland fallow (+32%) and with cropland conversion into grassland (+26%). Data on soil bulk density are critical in order to estimate SOC stock changes because (i) the bulk density changes with land‐use and needs to be accounted for when calculating SOC stocks and (ii) soil sample mass has to be corrected for bulk density changes in order to compare land‐use types on the same basis of soil mass. Without soil mass correction, land‐use change effects would have been underestimated by 28%. Land‐use change impact on SOC was not restricted to the surface soil, but relative changes were equally high in the subsoil, stressing the importance of sufficiently deep sampling.