Lunar and seasonal patterns in fecundity of an indeterminate,multiple‐spawning surgeonfish,the yellow tang Zebrasoma flavescens

Adult bull sharks Carcharhinus leucas were monitored with electronic tags to investigate horizontal and vertical movements in the Atlantic and Pacific Oceans. In both locations, C. leucas showed some fidelity to specific coastal areas with only limited horizontal movements away from the tagging sites after tag attachment. Fish tagged in the Bahamas were detected mostly in the upper 20 m of the water column in water 25-26° C, whereas C. leucas tagged in Fiji spent most of their time below 20 m in water usually >26° C. The results highlight the importance of coastal inshore habitats for this species.     

Isolation and characterization of 16 microsatellite loci in the humbug damselfish, Dascyllus aruanus (family Pomacentridae)

Here we report on 16 microsatellite loci designed for the damselfish Dascyllus aruanus. All loci were tested on 98 individuals and were polymorphic (seven to 35 alleles). Expected heterozygosity ranged from 0.705 to 0.942. Six loci showed Hardy-Weinberg disequilibrium due to the occurrence of null alleles. Cross-species amplifications conducted within the genus Dascyllus (D. carneus, D. strasburgi, D. trimaculatus) lead to polymorphic fragments in 32 out of 48 tests. These 16 loci will enable future research into the behavioural ecology and population ecology of Dascyllus aruanus throughout the Indo-Pacific.     

Characterization of 16 microsatellite loci for a common coral reef fish,the fierce shrimpgoby Ctenogobiops feroculus

We developed 16 pairs of primers for microsatellite loci of the fierce shrimpgoby, Ctenogobiops feroculus. Analysis of 35–40 gobies per locus from five islands in French Polynesia indicated that allele frequency varied from two to 30 per locus, while observed heterozygosity ranged between 0.05 and 0.98. These microsatellites should provide insight into patterns of dispersal and connectivity among populations of this common coral reef fish.     

An evaluation of a double‐tailed deformity in a coral‐reef surgeonfish Acanthurus nigrofuscus (Acanthuridae) using micro‐computed tomography

X‐ray micro‐computed tomography scans were used to examine the caudal‐fin structure of an unusual double‐tailed deformity in an adult brown surgeonfish Acanthurus nigrofuscus from the Great Barrier Reef. In both this case and in a similar double‐tailed deformity in a juvenile Tomini surgeonfish Ctenochaetus tominiensis from the Philippines, the caudal fin was duplicated along the dorsoventral axis. Detailed examination of the A. nigrofuscus specimen revealed that the deformity was associated with duplication and reflection of the hypural plates and the posterior vertebrae, yet the fish survived to adulthood, indicating that the effects of duplication on survival may be limited.     

Isolation and characterization of microsatellite loci in the mosquito Anopheles stephensi Liston (Diptera: Culicidae)

The mosquito Anopheles stephensi is an important malaria vector in India, Pakistan, Iran and Afghanistan. Differences in egg morphology and chromosomal characters have been described between urban and rural forms of this mosquito but the population genetic structure remains unclear. In India this species is mainly urban, rural populations are largely zoophilic and not thought to transmit malaria. In eastern Afghanistan and the Punjab and Northwest Frontier Province, Pakistan, it is the major malaria vector. We have developed primers for 16 microsatellite loci to assist in defining the population structure and epidemiological importance of this mosquito.     

Isolation and characterization of polymorphic microsatellite loci in the Hawaiian flycatcher,the elepaio (Chasiempis sandwichensis)

Thirteen polymorphic microsatellite loci were isolated and characterized from two clades of an endemic Hawaiian flycatcher, the elepaio (Chasiempis sandwichensis). Seven dinucleotide repeats and one trinucleotide repeat were cloned from Kauai elepaio; five dinucleotide repeats were cloned from Oahu elepaio. Polymorphism was assessed in a sample of Oahu elepaio (n = 22) revealing two to 16 alleles per locus. Observed heterozygosity ranged from 0.14 to 0.91. However, linkage analysis exposed highly significant linkage disequilibrium between two of the most polymorphic loci. Twelve loci are therefore expected to be useful for investigations of population structure.     

Climate change and larval transport in the ocean: fractional effects from physical and physiological factors

Changes in larval import, export, and self‐seeding will affect the resilience of coral reef ecosystems. Climate change will alter the ocean currents that transport larvae and also increase sea surface temperatures (SST), hastening development, and shortening larval durations. Here, we use transport simulations to estimate future larval connectivity due to: (1) physical transport of larvae from altered circulation alone, and (2) the combined effects of altered currents plus physiological response to warming. Virtual larvae from islands throughout Micronesia were moved according to present‐day and future ocean circulation models. The Hybrid Coordinate Ocean Model (HYCOM) spanning 2004–2012 represented present‐day currents. For future currents, we altered HYCOM using analysis from the National Center for Atmospheric Research Community Earth System Model, version 1‐Biogeochemistry, Representative Concentration Pathway 8.5 experiment. Based on the NCAR model, regional SST is estimated to rise 2.74 °C which corresponds to a ~17% decline in larval duration for some taxa. This reduction was the basis for a separate set of simulations. Results predict an increase in self‐seeding in 100 years such that 62–76% of islands experienced increased self‐seeding, there was an average domainwide increase of ~1–3% points in self‐seeding, and increases of up to 25% points for several individual islands. When changed currents alone were considered, approximately half (i.e., random) of all island pairs experienced decreased connectivity but when reduced PLD was added as an effect, ~65% of connections were weakened. Orientation of archipelagos relative to currents determined the directional bias in connectivity changes. There was no universal relationship between climate change and connectivity applicable to all taxa and settings. Islands that presently export large numbers of larvae but that also maintain or enhance this role into the future should be the focus of conservation measures that promote long‐term resilience of larval supply.     

Isolation and characterization of 12 microsatellite loci for Rhamnus alaternus (Rhamnaceae)

Twelve polymorphic microsatellite loci were developed for Rhamnus alaternus using an enriched-library approach. We detected 69 alleles in 49 individuals genotyped (mean number of alleles per locus was 4.79) in two different populations. The values of observed and expected heterozygosities ranged from 0.045 to 0.963 and 0.089 to 0.873 respectively. Levels of polymorphism and the exclusionary power of the developed markers render them readily applicable for studies of contemporary pollen and seed gene flow through parentage analyses.     

Early life history and settlement of the slender filefish, <Emphasis Type="Italic">Monacanthus tuckeri</Emphasis> (Monacanthidae), at Calabash Caye,Turneffe Atoll,Belize

Synopsis We examined early life history traits and patterns of settlement of the slender filefish, Monacanthus tuckeri, at Calabash Caye, Turneffe Atoll, Belize. A settlement peak was evident at the new moon, and no settlement occurred at the full moon. However, settlement rates at the quarter moons could not be estimated due to sampling gaps. Many reef fishes show new moon settlement peaks, so M. tuckeri shares some characteristics with the primarily perciform species on coral reefs. Pelagic larval duration was long (mean = 42 days) and variable, suggesting that dispersal patterns might be diverse. Size at settlement was large (mean = 32 mm total length) and also variable. Larval duration and size at settlement were outside of the average values exhibited by reef fishes, but are not beyond the extreme end of the range, and might be explained by association with pelagic debris prior to settlement. There were no differences in overall settlement rates on reef and seagrass habitats, and fish settling to either habitat did not differ in larval duration, size at settlement, or larval growth rate. This suggests that settlement to alternative habitats may be random, or driven by availability of suitable microhabitat, rather than habitat quality or individual traits.     

Isolation and characterization of microsatellite loci from chub Leuciscus cephalus (Pisces: Cyprinidae)

Twelve microsatellite markers were isolated from chub Leuciscus cephalus Linné, 1766 (Cyprinidae), a freshwater fish widely distributed in Europe. We assessed the level of genetic diversity for these loci in 24 individuals sampled in the Rhone river watershed. Nine loci were polymorphic, displaying from two to 13 alleles per locus with expected heterozygosity ranging from 0.160 to 0.887. Simultaneous migration of different polymerase chain reaction products was developed for routine analysis of L. cephalus populations.     

Isolation and characterization of 13 microsatellite loci for Neochamaelea pulverulenta (Cneoraceae)

We report 13 polymorphic nuclear microsatellite loci for Neochamaelea pulverulenta (Cneoraceae) using an enriched-library approach. Although this plant species is tetraploid, expected patterns for tetrasomic segregation were completely absent, and all loci analysed showed a diploid pattern of inheritance. We detected a total of 102 alleles in 57 individuals genotyped (mean number of alleles per locus was 7.85). The values of observed and expected heterozygosities ranged from 0.193 to 0.737 and 0.425 to 0.812 respectively. Disomic segregation, levels of polymorphism and the exclusionary power of the developed markers render them readily applicable for parentage assignment of dispersed seeds, and for analyses of spatial genetic structure and population connectivity.     

Isolation and characterization of 16 polymorphic microsatellite loci in the endemic Hawaiian damselfly Megalagrion xanthomelas (Odonata: Coenagrionidae)

Microsatellite loci have been isolated from two species of endemic Hawaiian damselflies, Megalagrion xanthomelas and M. eudytum, that are of conservation concern. Sixteen polymorphic loci were characterized in 32 M. xanthomelas from one population on Molokai and one on Hawaii Island. The total number of alleles per locus ranged from two to 16 and observed population heterozygosity ranged from 0.0 to 0.963. Eleven of these loci amplified successfully in M. eudytum as well. These loci will be used to further conservation efforts and infer genetic consequences of Pleistocene glaciations.     

Isolation and characterization of 16 polymorphic microsatellite loci for Frangula alnus (Rhamnaceae)

We report the first 16 polymorphic nuclear microsatellite markers developed for Frangula alnus (Rhamnaceae). Markers were tested on all three subspecies as well as on three local populations, including analyses of both leaf and seed endocarps. A total of 87 alleles were found (mean number of alleles per locus was 5.44) for 72 individuals genotyped. Observed and expected heterozygosities ranged from 0.097 to 0.792 and from 0.093 to 0.794, respectively. The levels of polymorphism and exclusionary power of the developed markers render them applicable for parentage analyses and measurements of seed dispersal through direct comparison of endocarps and adult tree genotypes.     

Spatio-temporal patterns of recruitment of labroid fishes (Pisces: Labridae and Scaridae) to damselfish territories

Recent studies have shown that recruitment variability is an important process structuring reef fish assemblages. The aim of this study is to describe the spatio-temporal patterns of recruitment of three abundant labroid taxa (Coris schroederi, Halichoeres melanurus and Scarus spp.), using damselfish territories as replicate units of habitat. Temporal recruitment patterns of each taxa were consistent among three sites along 2 km of reef tract, with small differences among sites probably the result of hydrological or random factors operating at that scale. Recruitment of only one species (C. schroederi) showed consistent differences in the magnitude of recruitment among sites, which was probably due to an overriding effect of habitat selection for the location of the territories on the reef profile at one site. Two taxa, C. schroederi and Scarus spp., recruited in low to moderate rates over many weeks with moderate recruitment peaks detected in one year only. This pattern may be characteristic of many labroid species that have protracted periods of production of larvae. In contrast, H. melanurus recruited in a single short pulse of high magnitude each summer, which suggests that production of larvae by this species may occur over a more restricted period of time. No strong pattern of lunar entrainment of recruitment was detected for any taxa, which may be due to a lack of lunar periodicity in production of larvae. Further studies are now required to identify the processes that are important in determining patterns of labroid recruitment. This revised version was published online in August 2006 with corrections to the Cover Date.     

Isolation and characterization of highly polymorphic microsatellite markers from the marine invasive species Crepidula fornicata (Gastropoda: Calyptraeidae)

Many marine organisms have pelagic larvae and these are often important agents of dispersal and establishment of exotic species. The larval phase and the hermaphroditic reproductive system of the invasive marine gastropod Crepidula fornicata are crucial in determining the success of this species along the European coasts. To analyse these factors, we developed seven microsatellite loci specific to C. fornicata. On the same set of individuals, the microsatellite loci exhibited a greater level of polymorphism than previously studied allozyme markers and, thus, will permit fine‐scale analysis and larval pool studies.     

Isolation and characterization of nine polymorphic microsatellite loci of the kelp greenling, Hexagrammos decagrammus, a temperate reef fish

Nine polymorphic microsatellite loci were developed and characterized for the temperate reef fish species, Hexagrammos decagrammus (kelp greenling). The number of alleles varied from three to 22 in a sample of 22 individuals from one population. Expected heterozygosities ranged from 0.354 to 0.979. These microsatellites allow us to investigate reproductive success of individuals, alternative mating strategies as well as population structure and metapopulation dynamics of this species.     

Characterization of microsatellite multiplexes for population genetic studies of bluehead wrasse (Thalassoma bifasciatum,Pisces: Labridae)

Bluehead wrasse (Thalassoma bifasciatum) are common coral reef fish found throughout the Caribbean. Larval duration in the plankton is relatively long for this species, which raises the possibility of long‐distance transport by ocean currents. Several nongenetic studies suggest, however, that most recruits were spawned locally. Determination of the relative importance of local recruitment vs. immigration for recruitment is needed for the effective management of populations and establishment of marine reserves. We characterized seven new polymorphic microsatellite loci for bluehead wrasse and optimized them into PCR multiplexes with three previously published loci to determine the level of dispersal between populations.     

Isolation and characterization of 11 polymorphic microsatellite markers for the marine gastropod Concholepas concholepas (Brugière, 1789)

Because of its long‐lived planktonic stage, the marine gastropod Concholepas concholepas is expected to exchange larvae over large distances. However, discrepancies between expected and realized dispersal have been documented in marine invertebrates. To investigate relationships between potential and effective (i.e. gene flow) dispersal, we developed 11 microsatellite markers and investigate their usefulness by analysing two populations distant by c. 4000 km. The 11 loci were found to be highly polymorphic in both populations, with 12–51 alleles according to the locus. This polymorphism is strong enough to allow fine‐scale population analyses including larval studies and paternity analyses.