Natural genetic variation in plant photosynthesis

Natural genetic variation in plant photosynthesis is a largely unexplored and as a result an underused genetic resource for crop improvement. Numerous studies show genetic variation in photosynthetic traits in both crop and wild species, and there is an increasingly detailed knowledge base concerning the interaction of photosynthetic phenotypes with their environment. The genetic factors that cause this variation remain largely unknown. Investigations into natural genetic variation in photosynthesis will provide insights into the genetic regulation of this complex trait. Such insights can be used to understand evolutionary processes that affect primary production, allow greater understanding of the genetic regulation of photosynthesis and ultimately increase the productivity of our crops.     

Millet-inspired systems metabolic engineering of NUE in crops

The use of nitrogen (N) fertilizers in agriculture has a great ability to increase crop productivity. However, their excessive use has detrimental effects on the environment. Therefore, it is necessary to develop crop varieties with improved nitrogen use efficiency (NUE) that require less N but have substantial yields. Orphan crops such as millets are cultivated in limited regions and are well adapted to lower input conditions. Therefore, they serve as a rich source of beneficial traits that can be transferred into major crops to improve their NUE. This review highlights the tremendous potential of systems biology to unravel the enzymes and pathways involved in the N metabolism of millets, which can open new possibilities to generate transgenic crops with improved NUE.     

Genetic and management approaches to boost UK wheat yields by ameliorating water deficits

Faced with the challenge of increasing global food production, there is the need to exploit all approaches to increasing crop yields. A major obstacle to boosting yields of wheat (an important staple in many parts of the world) is the availability and efficient use of water, since there is increasing stress on water resources used for agriculture globally, and also in parts of the UK. Improved soil and crop management and the development of new genotypes may increase wheat yields when water is limiting. Technical and scientific issues concerning management options such as irrigation and the use of growth-promoting rhizobacteria are explored, since these may allow the more efficient use of irrigation. Fundamental understanding of how crops sense and respond to multiple abiotic stresses can help improve the effective use of irrigation water. Experiments are needed to test the hypothesis that modifying wheat root system architecture (by increasing root proliferation deep in the soil profile) will allow greater soil water extraction thereby benefiting productivity and yield stability. Furthermore, better knowledge of plant and soil interactions and how below-ground and above-ground processes communicate within the plant can help identify traits and ultimately genes (or alleles) that will define genotypes that yield better under dry conditions. Developing new genotypes will take time and, therefore, these challenges need to be addressed now.     

Resistance to biotic and abiotic stress in the Triticeae

Poverty, hunger and malnutrition occur in many parts of the world despite the enormous progress that has taken place in agriculture and food production in the last century. It is estimated for wheat, that by 2020 the world will require a 60% increase in production to meet the projected requirement. Resistance to both biotic and abiotic stresses will be critical in reaching this goal. Distinct advantages accompany the use of genetic resistance to biotic and abiotic stresses. The most important advantage is the fact that response to the stress situation occurs independently of the managerial ability, skill and resource level of the producer. Anyone can use a stress resistant crop. Immense progress has been made in the field of functional genomics and molecular manipulation. It is clear that the restraining factor in future will not be the availability of scientific techniques and tools, or for that matter, genetic resources; but the human and financial capacity to achieve the goals on a world-wide scale so that they really do make a difference to the livelihood of the poor. Triticeae form a meaningful proportion of staple and non-staple food crops around the world. To achieve world-wide food security in the future, Triticeae with resistance to stresses will have to play a major role. The future demands crops with stable yield irrespective of environmental constraints, good quality and a high nutritional value; crops that are free of pesticide residues and other harmful substances.     

臭氧胁迫对冬小麦光响应能力及PSⅡ光能吸收与利用的影响

为准确评价O3胁迫对冬小麦光响应能力和PSⅡ光能吸收、分配与利用的影响,通过OTC设置了活性碳过滤空气(CF,4—28 nL/L)、不通风(5H,15—68 nL/L)、环境空气(NF,7—78 nL/L)、100nL/L O3 (CF100,96—108 nL/L)和150nL/L O3 (CF150,145—160nL/L) 等5种O3熏蒸处理,用IMAGING-PAM测量了冬小麦（丰抗13）扬花期的Fo、Fm及自然光下的快速光曲线。结果表明,O3胁迫显著降低了冬小麦PSⅡ的最大量子效率(Fv/Fm)、最大光合速率(Pm)、半饱和光强(Pm/α)、吸光系数(IA)、调节性热耗散的量子产额(Y(NPQ))和非光化学淬灭系数(NPQ),显著提高了冬小麦的初始光能利用效率(α)、非调节性热耗散的量子产额(Y(NO))和PSⅡ吸收光能的日累计损失（Daily ∑Y(NO)+ Daily ∑Y(NPQ)）;CF处理显著提高了冬小麦的Pm、α、Y(NPQ)、NPQ及PSⅡ日累计利用的光能（Daily ∑Y(Ⅱ)）;当其余4组的Y(NPQ)和NPQ趋于饱和时,NF仍在以较快的速率上升。O3胁迫显著降低了冬小麦吸收、利用光能的能力和光保护能力,改变了PSⅡ吸收光能的分配结构,提高了冬小麦对光强变化的敏感性,加剧了光抑制,致使冬小麦受到O3和过剩光能的双重伤害;CF处理下冬小麦的光合能力和光保护能力显著提高,但对强光的潜在耐受能力低于NF;固城的空气质量已对冬小麦造成一定影响,极可能导致产量损失。     

Generating high-yielding varieties by genetic manipulation of plant architecture

Despite a huge population increase since the 1960s, the green revolution more than doubled world grain production and averted large-scale famine. Food crop productivity will have to be further raised, however, because the world population is still increasing rapidly. Among several parameters associated with the increase in yield potential, genes that control plant height and tiller number (in cereal crops) have recently been identified. In addition, a promising strategy to generate semi-dwarf varieties has been developed. Recent advances in plant genome analyses and plant biotechnology will realize a second green revolution through the genetic engineering of food crops.     

Genomics and molecular breeding in lesser explored pulse crops: Current trends and future opportunities

Pulses are multipurpose crops for providing income, employment and food security in the underprivileged regions, notably the FAO-defined low-income food-deficit countries. Owing to their intrinsic ability to endure environmental adversities and the least input/management requirements, these crops remain central to subsistence farming. Given their pivotal role in rain-fed agriculture, substantial research has been invested to boost the productivity of these pulse crops. To this end, genomic tools and technologies have appeared as the compelling supplement to the conventional breeding. However, the progress in minor pulse crops including dry beans (Vigna spp.), lupins, lablab, lathyrus and vetches has remained unsatisfactory, hence these crops are often labeled as low profile or lesser researched. Nevertheless, recent scientific and technological breakthroughs particularly the next generation sequencing (NGS) are radically transforming the scenario of genomics and molecular breeding in these minor crops. NGS techniques have allowed de novo assembly of whole genomes in these orphan crops. Moreover, the availability of a reference genome sequence would promote re-sequencing of diverse genotypes to unlock allelic diversity at a genome-wide scale. In parallel, NGS has offered high-resolution genetic maps or more precisely, a robust genetic framework to implement whole-genome strategies for crop improvement. As has already been demonstrated in lupin, sequencing-based genotyping of the representative sample provided access to a number of functionally-relevant markers that could be deployed straight away in crop breeding programs. This article attempts to outline the recent progress made in genomics of these lesser explored pulse crops, and examines the prospects of genomics assisted integrated breeding to enhance and stabilize crop yields.     

Advances in development of transgenic pulse crops

It is three decades since the first transgenic pulse crop has been developed. Todate, genetic transformation has been reported in all the major pulse crops like Vigna species, Cicer arietinum, Cajanus cajan, Phaseolus spp, Lupinus spp, Vicia spp and Pisum sativum, but transgenic pulse crops have not yet been commercially released. Despite the crucial role played by pulse crops in tropical agriculture, transgenic pulse crops have not moved out from laboratories to large farm lands compared to their counterparts - 'cereals' and the closely related leguminous oil crop - 'soybean'. The reason for lack of commercialization of transgenic pulse crops can be attributed to the difficulty in developing transgenics with reproducibility, which in turn is due to lack of competent totipotent cells for transformation, long periods required for developing transgenics and lack of coordinated research efforts by the scientific community and long term funding. With optimization of various factors which influence genetic transformation of pulse crops, it will be possible to develop transgenic plants in this important group of crop species with more precision and reproducibility. A translation of knowledge from information available in genomics and functional genomics in model legumes like Medicago truncatula and Lotus japonicus relating to factors which contribute to enhancing crop yield and ameliorate the negative consequences of biotic and abiotic stress factors may provide novel insights for genetic manipulation to improve the productivity of pulse crops.     

Mind the gap: how do climate and agricultural management explain the ‘yield gap’ of croplands around the world?

Aim As the demands for food, feed and fuel increase in coming decades, society will be pressed to increase agricultural production – whether by increasing yields on already cultivated lands or by cultivating currently natural areas – or to change current crop consumption patterns. In this analysis, we consider where yields might be increased on existing croplands, and how crop yields are constrained by biophysical (e.g. climate) versus management factors. Location This study was conducted at the global scale. Methods Using spatial datasets, we compare yield patterns for the 18 most dominant crops within regions of similar climate. We use this comparison to evaluate the potential yield obtainable for each crop in different climates around the world. We then compare the actual yields currently being achieved for each crop with their ‘climatic potential yield’ to estimate the ‘yield gap’. Results We present spatial datasets of both the climatic potential yields and yield gap patterns for 18 crops around the year 2000. These datasets depict the regions of the world that meet their climatic potential, and highlight places where yields might potentially be raised. Most often, low yield gaps are concentrated in developed countries or in regions with relatively high‐input agriculture. Main conclusions While biophysical factors like climate are key drivers of global crop yield patterns, controlling for them demonstrates that there are still considerable ranges in yields attributable to other factors, like land management practices. With conventional practices, bringing crop yields up to their climatic potential would probably require more chemical, nutrient and water inputs. These intensive land management practices can adversely affect ecosystem goods and services, and in turn human welfare. Until society develops more sustainable high‐yielding cropping practices, the trade‐offs between increased crop productivity and social and ecological factors need to be made explicit when future food scenarios are formulated.     

Polyamines and abiotic stress tolerance in plants

Environmental stresses including climate change, especially global warming, are severely affecting plant growth and productivity worldwide. It has been estimated that two-thirds of the yield potential of major crops are routinely lost due to the unfavorable environmental factors. On the other hand, the world population is estimated to reach about 10 billion by 2050, which will witness serious food shortages. Therefore, crops with enhanced vigour and high tolerance to various environmental factors should be developed to feed the increasing world population. Maintaining crop yields under adverse environmental stresses is probably the major challenge facing modern agriculture where polyamines can play important role. Polyamines (PAs)(putrescine, spermidine and spermine) are group of phytohormone-like aliphatic amine natural compounds with aliphatic nitrogen structure and present in almost all living organisms including plants. Evidences showed that polyamines are involved in many physiological processes, such as cell growth and development and respond to stress tolerance to various environmental factors. In many cases the relationship of plant stress tolerance was noted with the production of conjugated and bound polyamines as well as stimulation of polyamine oxidation. Therefore, genetic manipulation of crop plants with genes encoding enzymes of polyamine biosynthetic pathways may provide better stress tolerance to crop plants. Furthermore, the exogenous application of PAs is also another option for increasing the stress tolerance potential in plants. Here, we have described the synthesis and role of various polyamines in abiotic stress tolerance in plants.Key words: abiotic stress tolerance, putrescine, spermidine, spermine, polyamines     

Possible changes to arable crop yields by 2050

By 2050, the world population is likely to be 9.1 billion, the CO₂ concentration 550 ppm, the ozone concentration 60 ppb and the climate warmer by ca 2°C. In these conditions, what contribution can increased crop yield make to feeding the world?CO₂ enrichment is likely to increase yields of most crops by approximately 13 per cent but leave yields of C4 crops unchanged. It will tend to reduce water consumption by all crops, but this effect will be approximately cancelled out by the effect of the increased temperature on evaporation rates. In many places increased temperature will provide opportunities to manipulate agronomy to improve crop performance. Ozone concentration increases will decrease yields by 5 per cent or more.Plant breeders will probably be able to increase yields considerably in the CO₂-enriched environment of the future, and most weeds and airborne pests and diseases should remain controllable, so long as policy changes do not remove too many types of crop-protection chemicals. However, soil-borne pathogens are likely to be an increasing problem when warmer weather will increase their multiplication rates; control is likely to need a transgenic approach to breeding for resistance. There is a large gap between achievable yields and those delivered by farmers, even in the most efficient agricultural systems. A gap is inevitable, but there are large differences between farmers, even between those who have used the same resources. If this gap is closed and accompanied by improvements in potential yields then there is a good prospect that crop production will increase by approximately 50 per cent or more by 2050 without extra land. However, the demands for land to produce bio-energy have not been factored into these calculations.     

Prospects of photosynthetic research for increasing agricultural productivity,with emphasis on the tropical C4Amaranthus and the cassava C3-C4 crops

Productivity of most improved major food crops showed stagnation in the past decades. As human population is projected to reach 9–10 billion by the end of the 21^st century, agricultural productivity must be increased to ensure their demands. Photosynthetic capacity is the basic process underlying primary biological productivity in green plants and enhancing it might lead to increasing potential of the crop yields. Several approaches may improve the photosynthetic capacity, including integrated systems management, in order to close wide gaps between actual farmer’s and the optimum obtainable yield. Conventional and molecular genetic improvement to increase leaf net photosynthesis (P_N) are viable approaches, which have been recently shown in few crops. Bioengineering the more efficient CC₄ into C₃ system is another ambitious approach that is currently being applied to the C₃ rice crop. Two under-researched, yet old important crops native to the tropic Americas (i.e., the CC₄ amaranths and the C₃-CC₄ intermediate cassava), have shown high potential P_N, high productivity, high water use efficiency, and tolerance to heat and drought stresses. These physiological traits make them suitable for future agricultural systems, particularly in a globally warming climate. Work on crop canopy photosynthesis included that on flowering genes, which control formation and decline of the canopy photosynthetic activity, have contributed to the climate change research effort. The plant breeders need to select for higher P_N to enhance the yield and crop tolerance to environmental stresses. The plant science instructors, and researchers, for various reasons, need to focus more on tropical species and to use the research, highlighted here, as an example of how to increase their yields.     

Plant breeding: Past achievements and expectations for the future

Plant breeding improvements have been responsible for 50 percent or more of the gains in yield per unit area of major crop plants in the United States over the past 50 yr. Rates of gain attributable to genetic improvements have averaged 1% per year, have generally been linear, and show no sign of slackening. Extrapolations indicate that varieties and hybrids of the year 2000 will yield, on average, 15% more than those of 1985 Improvements in tolerance to environmental stress, in grain-to-straw ratios, and in standability, as well as maintenance of required levels of resistance to disease, insect and nematode pests, have been the major genetic causes of higher achieved yields and will continue to be the foundation for further gains in productivity and stability. Broadened genetic diversity is also an increasingly important goal to promote stability and increase productivity potentials. Proportionately large research inputs are now needed to maintain desired rates of improvement, compared to earlier years. It seems likely that contributions from biotechnology will become increasingly important in years to come if improvement rates are to be maintained.     

Applications and potential of genome editing in crop improvement

Genome-editing tools provide advanced biotechnological techniques that enable the precise and efficient targeted modification of an organism’s genome. Genome-editing systems have been utilized in a wide variety of plant species to characterize gene functions and improve agricultural traits. We describe the current applications of genome editing in plants, focusing on its potential for crop improvement in terms of adaptation, resilience, and end-use. In addition, we review novel breakthroughs that are extending the potential of genome-edited crops and the possibilities of their commercialization. Future prospects for integrating this revolutionary technology with conventional and new-age crop breeding strategies are also discussed.     

FACE-ing the global change: Opportunities for improvement in photosynthetic radiation use efficiency and crop yield

The earth is rapidly changing through processes such as rising [CO₂], [O₃], and increased food demand. By 2050 the projected atmospheric [CO₂] and ground level [O₃] will be 50% and 20% higher than today. To meet future agricultural demand, amplified by an increasing population and economic progress in developing countries, crop yields will have to increase by at least 50% by the middle of the century. FACE (Free Air Concentration Enrichment) experiments have been conducted for more than 20 years in various parts of world to estimate, under the most realistic agricultural conditions possible, the impact of the CO₂ levels projected for the middle of this century on crops. The stimulations of crop seed yields by the projected CO₂ levels across FACE studies are about 18% on average and up to 30% for the hybrid rice varieties and vary among crops, cultivars, nitrogen levels and soil moisture. The observed increase in crop yields under the projected CO₂ levels fall short of what would be required to meet the projected future food demand, even with the most responsive varieties. Crop biomass production and seed yield is the product of photosynthetic solar energy conversion. Improvement in photosynthetic radiation use efficiency stands as the most promising opportunity allowing for major increases in crop yield in a future that portends major changes in climate and crop growing environments. Our advanced understanding of the photosynthetic process along with rapidly advancing capabilities in functional genomics, genetic transformation and synthetic biology promises new opportunities for crop improvement by greater photosynthesis and crop yield. Traits and genes that show promise for improving photosynthesis are briefly reviewed, including enhancing leaf photosynthesis capacity and reducing photorespiration loss, manipulating plant hormones’ responses for better ideotypes, extending duration of photosynthesis, and increasing carbon partitioning to the sink to alleviate feedback inhibition of photosynthesis.     

Deficit irrigation affects seasonal changes in leaf physiology and oil quality of Olea europaea (cultivars Frantoio and Leccino)

The olive tree is a traditionally nonirrigated crop that occupies quite an extensive agricultural area in Mediterranean-type agroecosystems. Improvements in water-use efficiency of crops are essential under the scenarios of water scarcity predicted by global change models for the Mediterranean region. Recently, irrigation has been introduced to increase the low land productivity, but there is little information on ecophysiological aspects and quality features intended for a sagacious use of water, while being of major importance for the achievement of high-quality products as olive oil. Therefore, deficit irrigation programmes were developed to improve water-use efficiency, crop productivity and quality in a subhumid zone of Southern Italy with good winter–spring precipitation. The response of mature olive trees to deficit irrigation in deep soils was studied on cultivars Frantoio and Leccino by examining atmospheric environment and soil moisture, gas exchange and plant water status, as well as oil yield and chemical analysis. Trees were not irrigated (rainfed) or subjected to irrigation at 66% and 100% of crop evapotranspiration (ET_C), starting from pit hardening to early fruit veraison. Improvements in the photosynthetic capacity induced by increasing soil water availability were only of minor importance. However, plant water status was positively influenced by deficit irrigation, with 66% and 100% of ET_C treatments hardly differing from one another though consistently diverging from rainfed plants. The effect of water stress on photosynthesis was mainly dependent on diffusion resistances in response to soil moisture. Leccino showed higher instantaneous water-use efficiency than Frantoio. Crop yield increased proportionally to the amount of seasonal water volume, confirming differences between cultivars in water-use efficiency. The unsaturated/saturated and the monounsaturated/polyunsaturated fatty acid ratios of the oil also differed between cultivars, while the watering regime had minor effects. Although irrigation can modify the fatty acid profile, polyphenol contents were scarcely affected by the water supply. Irrigation to 100% of ET_C in the period August–September might be advisable to achieve high-quality yields, while saving consistent amounts of water.     

The Effect of Soil Erosion on Europe’s Crop Yields

Abstract Soil erosion negatively affects crop yields and may have contributed to the collapse of ancient civilizations. Whether erosion may have such an impact on modern societies as well, is subject to debate. In this paper we quantify the relationship between crop yields and soil water available to plants, the most important yield-determining factor affected by erosion, at the European scale. Using information on the spatial distribution of erosion rates we calculate the potential threat of erosion-induced productivity losses. We show that future reductions in productivity in Europe as a whole are relatively small and do not pose a substantial threat to crop production within the coming century. However, within Europe there is considerable variability, and although productivity in northern Europe is not likely to be significantly reduced by soil erosion, for the southern countries the threat of erosion-induced productivity declines is stronger.     

Plant nutrition in the 20th and perspectives for the 21st century

This paper briefly presents the knowledge of plant nutrition in 1900 and its expansion since then in two areas - the discovery of the micronutrients and the absorption of nutrients from soils.Application of macro- and micronutrient fertilizers has contributed substantially to the huge increase in world food production experienced this century. In developed countries, excessive fertilizer use has led to serious problems of nutrient pollution; here, plant nutritionists will be concerned with monitoring nutrient status of crops and soils to maintain crop production with minimum loss of nutrients to the environment, and development of cultivars with high nutrient efficiency in soils with luxury supplies of nutrients.In many developing countries, soil infertility limits productivity; here, plant nutritional research can raise productivity by diagnosis of nutrient deficiencies and toxicities of crops on previously unfertilized soils, their correction with minimal fertilizer and treatment costs, and development of cultivars with high nutrient efficiency in deficient soils and high tolerance of natural toxicities.The pre-occupation of developed countries with pollution is blinding them to the urgent needs of developing countries for fertilizers and fertilizer research to increase crop production ha-1 as an alternative to clearing more land.     

Role of modern chemistry in sustainable arable crop protection

Organic chemistry has been, and for the foreseeable future will remain, vitally important for crop protection. Control of fungal pathogens, insect pests and weeds is crucial to enhanced food provision. As world population continues to grow, it is timely to assess the current situation, anticipate future challenges and consider how new chemistry may help meet those challenges. In future, agriculture will increasingly be expected to provide not only food and feed, but also crops for conversion into renewable fuels and chemical feedstocks. This will further increase the demand for higher crop yields per unit area, requiring chemicals used in crop production to be even more sophisticated. In order to contribute to programmes of integrated crop management, there is a requirement for chemicals to display high specificity, demonstrate benign environmental and toxicological profiles, and be biodegradable. It will also be necessary to improve production of those chemicals, because waste generated by the production process mitigates the overall benefit. Three aspects are considered in this review: advances in the discovery process for new molecules for sustainable crop protection, including tests for environmental and toxicological properties as well as biological activity; advances in synthetic chemistry that may offer efficient and environmentally benign manufacturing processes for modern crop protection chemicals; and issues related to energy use and production through agriculture.     

Genetic and genomic resources of sorghum to connect genotype with phenotype in contrasting environments

With the recent development of genomic resources and high‐throughput phenotyping platforms, the 21st century is primed for major breakthroughs in the discovery, understanding and utilization of plant genetic variation. Significant advances in agriculture remain at the forefront to increase crop production and quality to satisfy the global food demand in a changing climate all while reducing the environmental impacts of the world's food production. Sorghum, a resilient C₄ grain and grass important for food and energy production, is being extensively dissected genetically and phenomically to help connect the relationship between genetic and phenotypic variation. Unlike genetically modified crops such as corn or soybean, sorghum improvement has relied heavily on public research; thus, many of the genetic resources serve a dual purpose for both academic and commercial pursuits. Genetic and genomic resources not only provide the foundation to identify and understand the genes underlying variation, but also serve as novel sources of genetic and phenotypic diversity in plant breeding programs. To better disseminate the collective information of this community, we discuss: (i) the genomic resources of sorghum that are at the disposal of the research community; (ii) the suite of sorghum traits as potential targets for increasing productivity in contrasting environments; and (iii) the prospective approaches and technologies that will help to dissect the genotype–phenotype relationship as well as those that will apply foundational knowledge for sorghum improvement.