环境因子对山西太岳山典型森林类型物种多样性及其功能多样性的影响

该研究采用典型样地法,调查群落内物种分布并测量植物功能性状(叶面积和植株高度),对山西太岳山不同坡位华北落叶松-白桦混交林以及辽东栎次生林物种多样性及其功能多样性进行比较分析,探究环境因子对不同群落层次(乔木、灌木、草本)物种多样性及其功能多样性的影响机制,以及环境因子与群落构建之间的联系,为森林生态系统多样性研究以及经营管理提供理论依据。结果显示:(1)华北落叶松-白桦混交林的物种分布更加均匀,物种多样性和功能多样性(乔木层)均显著高于辽东栎次生林。(2)华北落叶松-白桦混交林乔木层功能均匀度与功能分散指数显著高于辽东栎次生林,但灌木草本层低于辽东栎次生林。(3)不同群落层次的物种多样性与功能多样性均呈正相关关系,影响物种分布和性状分布的环境因子存在差异,物种多样性受多种环境因子的综合影响,而单个环境因子对功能多样性影响较大,环境解释力与林分类型和群落层次相关。(4)乔木层物种多样性主要受土壤pH、冠层结构(MLA、林分开度)以及光照影响,灌木层物种多样性与土壤pH和MLA密切相关,林下总辐射、土壤养分(SOC、STN)、土壤相对含水率是影响草本层物种分布的主要环境因子;冠层结构(MLA、林分开度)是影响乔木层功能多样性最主要的环境因子,土壤pH和坡位分别是华北落叶松-白桦混交林和辽东栎次生林灌木层功能多样性的主要影响因子,影响草本层功能多样性的主要环境因子是土壤相对含水率与LAI。研究表明,在垂直分层的森林生态系统中,不同群落层次竞争的主要环境资源存在差异,乔木层通过改变冠层结构和林内环境限制林下物种分布和性状分布。     

Phylogenetic and Functional Diversity Within Toluene-Degrading,Sulphate-Reducing Consortia Enriched from a Contaminated Aquifer

Three toluene-degrading microbial consortia were enriched under sulphate-reducing conditions from different zones of a benzene, toluene, ethylbenzene and xylenes (BTEX) plume of two connected contaminated aquifers. Two cultures were obtained from a weakly contaminated zone of the lower aquifer, while one culture originated from the highly contaminated upper aquifer. We hypothesised that the different habitat characteristics are reflected by distinct degrader populations. Degradation of toluene with concomitant production of sulphide was demonstrated in laboratory microcosms and the enrichment cultures were phylogenetically characterised. The benzylsuccinate synthase alpha-subunit (bssA) marker gene, encoding the enzyme initiating anaerobic toluene degradation, was targeted to characterise the catabolic diversity within the enrichment cultures. It was shown that the hydrogeochemical parameters in the different zones of the plume determined the microbial composition of the enrichment cultures. Both enrichment cultures from the weakly contaminated zone were of a very similar composition, dominated by Deltaproteobacteria with the Desulfobulbaceae (a Desulfopila-related phylotype) as key players. Two different bssA sequence types were found, which were both affiliated to genes from sulphate-reducing Deltaproteobacteria. In contrast, the enrichment culture from the highly contaminated zone was dominated by Clostridia with a Desulfosporosinus-related phylotype as presumed key player. A distinct bssA sequence type with high similarity to other recently detected sequences from clostridial toluene degraders was dominant in this culture. This work contributes to our understanding of the niche partitioning between degrader populations in distinct compartments of BTEX-contaminated aquifers.     

Using Phylogenetic,Functional and Trait Diversity to Understand Patterns of Plant Community Productivity

Background

Two decades of research showing that increasing plant diversity results in greater community productivity has been predicated on greater functional diversity allowing access to more of the total available resources. Thus, understanding phenotypic attributes that allow species to partition resources is fundamentally important to explaining diversity-productivity relationships.

Methodology/Principal Findings

Here we use data from a long-term experiment (Cedar Creek, MN) and compare the extent to which productivity is explained by seven types of community metrics of functional variation: 1) species richness, 2) variation in 10 individual traits, 3) functional group richness, 4) a distance-based measure of functional diversity, 5) a hierarchical multivariate clustering method, 6) a nonmetric multidimensional scaling approach, and 7) a phylogenetic diversity measure, summing phylogenetic branch lengths connecting community members together and may be a surrogate for ecological differences. Although most of these diversity measures provided significant explanations of variation in productivity, the presence of a nitrogen fixer and phylogenetic diversity were the two best explanatory variables. Further, a statistical model that included the presence of a nitrogen fixer, seed weight and phylogenetic diversity was a better explanation of community productivity than other models.

Conclusions

Evolutionary relationships among species appear to explain patterns of grassland productivity. Further, these results reveal that functional differences among species involve a complex suite of traits and that perhaps phylogenetic relationships provide a better measure of the diversity among species that contributes to productivity than individual or small groups of traits.     

SNP Mining in Crassostrea gigas EST Data: Transferability to Four Other Crassostrea Species,Phylogenetic Inferences and Outlier SNPs under Selection

Oysters, with high levels of phenotypic plasticity and wide geographic distribution, are a challenging group for taxonomists and phylogenetics. Our study is intended to generate new EST-SNP markers and to evaluate their potential for cross-species utilization in phylogenetic study of the genus Crassostrea. In the study, 57 novel SNPs were developed from an EST database of C. gigas by the HRM (high-resolution melting) method. Transferability of 377 SNPs developed for C. gigas was examined on four other Crassostrea species: C. sikamea, C. angulata, C. hongkongensis and C. ariakensis. Among the 377 primer pairs tested, 311 (82.5%) primers showed amplification in C. sikamea, 353 (93.6%) in C. angulata, 254 (67.4%) in C. hongkongensis and 253 (67.1%) in C. ariakensis. A total of 214 SNPs were found to be transferable to all four species. Phylogenetic analyses showed that C. hongkongensis was a sister species of C. ariakensis and that this clade was sister to the clade containing C. sikamea, C. angulata and C. gigas. Within this clade, C. gigas and C. angulata had the closest relationship, with C. sikamea being the sister group. In addition, we detected eight SNPs as potentially being under selection by two outlier tests (fdist and hierarchical methods). The SNPs studied here should be useful for genetic diversity, comparative mapping and phylogenetic studies across species in Crassostrea and the candidate outlier SNPs are worth exploring in more detail regarding association genetics and functional studies.     

Integrating Taxonomic,Functional and Phylogenetic Beta Diversities: Interactive Effects with the Biome and Land Use across Taxa

The spatial distribution of species, functional traits and phylogenetic relationships at both the regional and local scales provide complementary approaches to study patterns of biodiversity and help to untangle the mechanisms driving community assembly. Few studies have simultaneously considered the taxonomic (TBD), functional (FBD) and phylogenetic (PBD) facets of beta diversity. Here we analyze the associations between TBD, FBD, and PBD with the biome (representing different regional species pools) and land use, and investigate whether TBD, FBD and PBD were correlated. In the study design we considered two widely used indicator taxa (birds and ants) from two contrasting biomes (subtropical forest and grassland) and land uses (tree plantations and cropfields) in the southern Neotropics. Non-metric multidimensional scaling showed that taxonomic, functional and phylogenetic distances were associated to biome and land use; study sites grouped into four groups on the bi-dimensional space (cropfields in forest and grassland, and tree plantations in forest and grassland), and that was consistent across beta diversity facets and taxa. Mantel and PERMANOVA tests showed that TBD, FBD and PBD were positively correlated for both bird and ant assemblages; in general, partial correlations were also significant. Some of the functional traits considered here were conserved along phylogeny. Our results will contribute to the development of sound land use planning and beta diversity conservation.     

西藏东南部色季拉山兰科植物的区系特征和物种多样性

对我国西藏东南部色季拉山兰科植物的区系地理特征和物种多样性进行了研究.结果表明:1.色季拉山有兰科植物35属67种,是西藏兰科植物分布最为丰富的地域之一;2.色季拉山兰科植物生活型齐全,陆生、附生、腐生3种类型皆有,陆生兰最多,共21属42种,分别占总属数和总种数的60.00％和62.69％,附生兰有11属21种,腐生兰有4属4种;3.就6个海拔带分析,色季拉山兰科植物的物种分布数量呈现随海拔升高逐渐减少的趋势,其中陆生兰从低到高分布于整个山体的各个海拔带,附生兰所有种均分布在中低海拔,4种腐生兰在该区内仅分布在2 800 ～3 730 m比较狭窄的区域内;4.兰科物种的分布区类型表明:色季拉山兰科植物区系成分比较复杂,热带成分和温带成分属相当,以热带成分稍多,而就种的类型看,热带分布类型相对较少,温带分布类型占较大优势,共有43种,占总种数的64.18％,反映了色季拉山兰科植物区系为热带与温带相交错,并向温带过渡的性质;其次,种的类型内东亚分布最多,共有30种,占总种数的44.78％,占温带分布的69.77％,其中中国-喜马拉雅分布变型20种,占东亚分布的66.67％,反映了色季拉山区兰科植物区系具有一定的高山植物区系的特色.中国特有分布12种,也证实了该区兰科植物区系具有特有现象发达的年轻性及其较强的衍化、特化性质.     

Geographic Variation in Plant Community Structure of Salt Marshes: Species,Functional and Phylogenetic Perspectives

In general, community similarity is thought to decay with distance; however, this view may be complicated by the relative roles of different ecological processes at different geographical scales, and by the compositional perspective (e.g. species, functional group and phylogenetic lineage) used. Coastal salt marshes are widely distributed worldwide, but no studies have explicitly examined variation in salt marsh plant community composition across geographical scales, and from species, functional and phylogenetic perspectives. Based on studies in other ecosystems, we hypothesized that, in coastal salt marshes, community turnover would be more rapid at local versus larger geographical scales; and that community turnover patterns would diverge among compositional perspectives, with a greater distance decay at the species level than at the functional or phylogenetic levels. We tested these hypotheses in salt marshes of two regions: The southern Atlantic and Gulf Coasts of the United States. We examined the characteristics of plant community composition at each salt marsh site, how community similarity decayed with distance within individual salt marshes versus among sites in each region, and how community similarity differed among regions, using species, functional and phylogenetic perspectives. We found that results from the three compositional perspectives generally showed similar patterns: there was strong variation in community composition within individual salt marsh sites across elevation; in contrast, community similarity decayed with distance four to five orders of magnitude more slowly across sites within each region. Overall, community dissimilarity of salt marshes was lowest on the southern Atlantic Coast, intermediate on the Gulf Coast, and highest between the two regions. Our results indicated that local gradients are relatively more important than regional processes in structuring coastal salt marsh communities. Our results also suggested that in ecosystems with low species diversity, functional and phylogenetic approaches may not provide additional insight over a species-based approach.     

Eriophyoid Mites (Acariformes,Eriophyoidea) from Rosaceae: Taxonomic Diversity,Host-Parasite Relationships,and Ability to Cause Galls

A review on the complex of species of eriophyoid mites associated with Rosaceae is given, focused on the phylogeny, biology, and distribution of their host plants and galls induced by these mites. About 200 species of 39 genera from 3 families ofEriophyoidea are known from Rosaceae. Among them, 6 species from 2 genera belong to Phytoptidae, 178 species from 27 genera, to Eriophyidae, and 28 species from 10 genera, to Diptilomiopidae; 7 genera of the latter family are represented on Rosaceae by a single species each. The ability to induce galls is discussed using the example of the most widespread and numerous genera of the family Eriophyidae from Rosaceae. Mites of two large subfamilies, Eriophyinae and Phyllocoptinae, include both vagrant and concealed forms. The types of galls caused by mites are related to the systematic position of mites and the distribution of mites and their host plants. The hypothesis of host shifts of eriophyoid mites from other plant families to Rosaceae is considered. Most of the species which presumably switched to Rosaceae have been described from Southeast Asia. Morphological similarity between vagrant and concealed forms from the paraphyletic tribes Eriophyini and Phyllocoptini, and also Aceriini and Anthocoptini is discussed. Their pairwise similarity might be the result of evolution (Eriophyini → Phyllocoptini and Aceriini → Anthocoptini) connected with change oflife style.     

Contrasting Taxonomic and Phylogenetic Diversity Responses to Forest Modifications: Comparisons of Taxa and Successive Plant Life Stages in South African Scarp Forest

The degradation of natural forests to modified forests threatens subtropical and tropical biodiversity worldwide. Yet, species responses to forest modification vary considerably. Furthermore, effects of forest modification can differ, whether with respect to diversity components (taxonomic or phylogenetic) or to local (α-diversity) and regional (β-diversity) spatial scales. This real-world complexity has so far hampered our understanding of subtropical and tropical biodiversity patterns in human-modified forest landscapes. In a subtropical South African forest landscape, we studied the responses of three successive plant life stages (adult trees, saplings, seedlings) and of birds to five different types of forest modification distinguished by the degree of within-forest disturbance and forest loss. Responses of the two taxa differed markedly. Thus, the taxonomic α-diversity of birds was negatively correlated with the diversity of all plant life stages and, contrary to plant diversity, increased with forest disturbance. Conversely, forest disturbance reduced the phylogenetic α-diversity of all plant life stages but not that of birds. Forest loss neither affected taxonomic nor phylogenetic diversity of any taxon. On the regional scale, taxonomic but not phylogenetic β-diversity of both taxa was well predicted by variation in forest disturbance and forest loss. In contrast to adult trees, the phylogenetic diversity of saplings and seedlings showed signs of contemporary environmental filtering. In conclusion, forest modification in this subtropical landscape strongly shaped both local and regional biodiversity but with contrasting outcomes. Phylogenetic diversity of plants may be more threatened than that of mobile species such as birds. The reduced phylogenetic diversity of saplings and seedlings suggests losses in biodiversity that are not visible in adult trees, potentially indicating time-lags and contemporary shifts in forest regeneration. The different responses of taxonomic and phylogenetic diversity to forest modifications imply that biodiversity conservation in this subtropical landscape requires the preservation of natural and modified forests.     

Entomopathogenic Nematodes: Biodiversity, Geographical Distribution and the Convention on Biological Diversity

This paper addresses three major issues. Firstly, molecular taxonomy and its application to elucidate the biodiversity and biogeography of entomopathogenic nematodes is considered. Accurate identification is fundamental for understanding biodiversity, and because these nematodes are morphologically conservative, molecular techniques will provide the insights necessary to develop a robust, morphologically based taxonomy. Secondly, a review of the knowledge on their biogeography and habitat specificity, including a consideration of the limitations to the available data is given. Much of the information is presented in two tables which summarize the distributions of recognized species at continental and national levels. Thirdly, this paper provides a brief consideration of the Convention on Biological Diversity and its implications for future work with entomopathogenic nematodes and biological control.     

139 Taxonomic Re-Examination of Eight Species of Nitella (Charales, Charophyceae) from Asia, And Phylogenetic Relationships Within the Genus Based on rbcL and Atpb Gene Sequences

Eight taxa of Nitella, collected from Asia, were investigated using LM and SEM of the oospores and sequencing of rbc L gene to improve understanding of their taxonomic status. Our SEM observations demonstrated that the oospore morphology of six taxa – N. capitulifera (= N. acuminata f. capitulifera ), N. japonica (= N. furcata f. japonica ), N. tumulosa (= N. furcata f. tumulosa ), N. megaspora comb. nov. (= N. pseudoflabellata f. megaspora ), N. gracillima (= N. gracilis f. gracillima ), and N. axilliformis (= N. translucens f. axilliformis ) – is distinctly different from that of the species to which R.D. Wood assigned them as infraspecific taxa. Our rbc L sequence data showed that N. japonica is separated phylogenetically from N. furcata , N. tumulosa from N. furcata , N. megaspora from N. pseudoflabellata , and N. axilliformis from N. translucens . In addition, to re-examine the taxonomic system of Nitella proposed by R.D. Wood, who treated oospore wall ornamentations as a diagnosis at the infraspecific level, we carried out molecular phylogenetic analyses using the combined sequence dataset for atpB and rbc L genes of these eight species, as well as twelve species of Nitella previously studied. The combined sequence data resolved five robust clades within the subgenus Tieffallenia that were characterized by differences in oospore wall ornamentation. However, the species and sectional diagnoses of R.D. Wood, such as the form and cell number of dactyls in vegetative thalli, were variable within the clades. Therefore, R.D. Wood's taxonomic system appears unnatural, at least within the subgenus Tieffallenia .     

Mixed Infections, Cryptic Diversity, and Vector-Borne Pathogens: Evidence from Polygenis Fleas and Bartonella Species

Coinfections within hosts present opportunities for horizontal gene transfer between strains and competitive interactions between genotypes and thus can be a critical element of the lifestyles of pathogens. Bartonella spp. are Alphaproteobacteria that parasitize mammalian erythrocytes and endothelial cells. Their vectors are thought to be various biting arthropods, such as fleas, ticks, mites, and lice, and they are commonly cited as agents of various emerging diseases. Coinfections by different Bartonella strains and species can be common in mammals, but little is known about specificity and coinfections in arthropod vectors. We surveyed the rate of mixed infections of Bartonella in flea vectors (Polygenis gwyni) parasitizing cotton rats (Sigmodon hispidus) in which previous surveys indicated high rates of infection. We found that nearly all fleas (20 of 21) harbored one or more strains of Bartonella, with rates of coinfection approaching 90%. A strain previously identified as common in cotton rats was also common in their fleas. However, another common strain in cotton rats was absent from P. gwyni, while a rare cotton rat strain was quite common in P. gwyni. Surprisingly, some samples were also coinfected with a strain phylogenetically related to Bartonella clarridgeiae, which is typically associated with felids and ruminants. Finally, a locus (pap31) that is characteristically borne on phage in Bartonella was successfully sequenced from most samples. However, sequence diversity in pap31 was novel in the P. gwyni samples, relative to other Bartonella previously typed with pap31, emphasizing the likelihood of large reservoirs of cryptic diversity in natural populations of the pathogen.