Distribution of ectomycorrhizal and pathogenic fungi in soil along a vegetational change from Japanese black pine (Pinus thunbergii) to black locust (Robinia pseudoacacia)

The nitrogen-fixing tree black locust (Robinia pseudoacacia L.) seems to affect ectomycorrhizal (ECM) colonization and disease severity of Japanese black pine (Pinus thunbergii Parl.) seedlings. We examined the effect of black locust on the distribution of ECM and pathogenic fungi in soil. DNA was extracted from soil at depths of 0–5 and 5–10 cm, collected from the border between a Japanese black pine- and a black locust-dominated forest, and the distribution of these fungi was investigated by denaturing gradient gel electrophoresis. The effect of soil nutrition and pH on fungal distribution was also examined. Tomentella sp. 1 and Tomentella sp. 2 were not detected from some subplots in the Japanese black pine-dominated forest. Ectomycorrhizas formed by Tomentella spp. were dominant in black locust-dominated subplots and very little in the Japanese black pine-dominated forest. Therefore, the distribution may be influenced by the distribution of inoculum potential, although we could not detect significant relationships between the distribution of Tomentella spp. on pine seedlings and in soils. The other ECM fungi were detected in soils in subplots where the ECM fungi was not detected on pine seedlings, and there was no significant correlation between the distribution of the ECM fungi on pine seedlings and in soils. Therefore, inoculum potential seemed to not always influence the ECM community on roots. The distribution of Lactarius quieticolor and Tomentella sp. 2 in soil at a depth of 0–5 cm positively correlated with soil phosphate (soil P) and that of Tomentella sp. 2 also positively correlated with soil nitrogen (soil N). These results suggest the possibility that the distribution of inoculum potential of the ECM fungi was affected by soil N and soil P. Although the mortality of the pine seedlings was higher in the black locust-dominated area than in the Japanese black pine-dominated area, a pathogenic fungus of pine seedlings, Cylindrocladium pacificum, was detected in soil at depths of 0–5 and 5–10 cm from both these areas. This indicates that the disease severity of pine seedlings in this study was influenced by environmental conditions rather than the distribution of inoculum potential.     

On microalgal settlements and the sluggish development of marine biofouling in Port Blair waters,Andamans

Settlement of microalgae was investigated on Perspex®, aluminium and zinc coupons immersed in Port Blair Bay waters for over 3 months. Commencement of fouling was exceptionally slow, and few microalgae were found until 14 days. Settlement occurred thereafter, and 47 microalgal species contributed to the fouling. The dominant forms belonged to the genera Navicula and Nitzschia, whereas Coscinodiscus eccentricus, Gyrosigma balticum and Trichodesmium erythraeum also accounted for high proportions of the settlements. The dominance of Nitzschia sigma was particularly marked on zinc coupons, suggesting an ability by the organism to resist toxicity. Settlement of both centric and pennate diatoms was observed in the early and mid periods, and absolute dominance of the pennate diatoms subsequently. The fouling mass was low even after 103 days, and it is speculated that strong ultraviolet radiation might be the prime reason for the sluggish development of marine biofouling in these oceanic island waters.     

Grazing and UV radiation effects on an Antarctic intertidal microalgal assemblage: a long-term field study

A 15 week field experiment (austral summer Nov–Mar) was carried out in an intertidal hard bottom platform in Antarctica (King George Island). To test whether grazing and ultraviolet radiation (UVR) influenced the succession of a benthic microalgal assemblage, a two-factorial design was used (1) ambient radiation, >280 nm; (2) ambient minus UV-B, >320 nm; (3) ambient minus UVR, >400 nm versus grazer–no grazer). On four sampling occasions microalgae were identified, counted and carbon contents were calculated. The assemblage was dominated by the diatom genera Navicula and Cocconeis. Biomass was generally low in all treatments but was significantly reduced by grazing throughout the experiment. No significant UV effects were found. Grazer absence particularly favoured diatoms of the genus Cocconeis. We conclude that the Antarctic microalgal assemblage was unaffected by present day UVR whereas grazers acted as important drivers on the intertidal microalgal community structure.     

Application of a rapid thin section method for observations on decomposing litter in mor humus form in a subalpine coniferous forest

Morphological changes in the decomposing litter ofAbies spp. andBetula spp. in a mor humus form were studied by a rapid thin section method. According to the morphological characteristics, the epidermis, mesophyll and vascular bundleof Abies needle litter were classified into four types: (i) newly fallen; (ii) slightly decomposed; (iii) moderately decomposed; and (iv) greatly decomposed. The distribution of these tissue types along the profile of the forest floor was then investigated. The morphological changes in other litter types, such as branches, scales andBetula leaves during decomposition were observed directly with microscope and electron microscope. Five vertical thin sections and 80 horizontal thin sections were used for these observations and investigations. the decomposition ofAbies litter was slower than that ofBetula litter. The relative decomposition rate of the tissues was in the order of: mesophyll>vascular bundle >epidermis inAbies needles; mesophyll≥epidermis>vascular bundles inBetula leaves; and inner bark >xylem>outer bark in bothAbies andBetula branches. The last remains of the litter were usually stomata, segments of seminiferous scale and outer bark ofAbies. The decomposition of plant litter occurred mainly within the L and F layers of the soil (0–5 cm in depth).Abies needles andBetula leaves completely disappeared at depths of 0–6 cm and 0–4 cm, respectively. Branches disappeared within the top of 5 cm and 6–8 cm forBetula and forAbies, respectively. The scales ofAbies were most slowly decomposed in the soil layers.     

Distribution characteristics of fungal communities with depth in paddy fields of three soil types in China

Little is known about the distribution of fungal communities with soil depth on relatively large scales. In this study, typical paddy soils in three regions (Hailun, Changshu, and Yingtan) from north to south China were selected to investigate the vertical distribution (0-100 cm) of the fungal community by Illumina MiSeq sequencing, and to identify the main factors influencing the fungal community distribution. The results indicated that the structure of the soil fungal community changed significantly with region and soil depth. Soil fungal taxa such as Zygomycota, Glomeromycota, Saccharomycete, Kazachstania, Mortierella, Massariosphaeria, Hypholoma, and Zopfiella were enriched at depths of 0–20 cm, whereas Dothideomycetes, Microbotryomycetes, Tremellomycetes, Sporobolomyces, Cryptococcus, Rhodotorula, Fusarium, and Pyrenochaetopsis had high relative abundances at 80–100 cm. Variance partitioning analysis indicated that the geographic distance contributed more to the fungal community variation than environmental variables on a large scale. In addition, soil total carbon and nitrogen contents were the main environmental factors driving the vertical distribution of the fungal community in paddy soils.     

The contribution of epipelon to total sediment microalgae in a shallow temperate eutrophic loch (Loch Leven, Scotland)

Benthic microalgae are known to perform important ecosystem functions in shallow lakes. As such it is important to understand the environmental variables responsible for regulating community structure, positioning and biomass. We tested the hypothesis that the positioning (across a depth gradient of 2–22 m overlying water depth) and relative biomass (determined using bulk and lens tissue harvested chlorophyll (Chl) a concentrations) of the epipelon community would vary independently with season (12 monthly samples) and across natural gradients of light and habitat disturbance relative to the total benthic algal community (i.e. all viable microalgae in the surface sediments) in a shallow eutrophic loch. Total sediment microalgal Chl a concentrations (TS-Chl; range: 5–874 μg Chl a g⁻¹ dw) were highest in winter and in the deepest site (20 m overlying water depth), apparently as a result of phytoplanktonic settling and sediment focussing processes. Epipelic Chl a concentrations (Epi-Chl; range: <0.10–6.0 μg Chl a g⁻¹ dw) were highest in winter/spring, a period when water clarity was highest and TS-Chl lowest. Principal components analysis highlighted strong associations between Epi-Chl and sites of intermediate depths (2.5–5.5 m) in all seasons except autumn/winter. Autumn/winter represented the season with the highest average wind speeds preceding sampling, during which the highest Epi-Chl concentrations were associated with the deepest sites. Epi-Chl was associated with intermediate light and habitat disturbance during spring/summer and summer/autumn and varied positively with habitat disturbance, only, in autumn/winter and winter/spring. The epipelon community structure also varied with depth; diatoms dominated shallow water sediments, cyanobacteria dominated deep water sediments, and sediments at sites of intermediate depth returned the highest biovolume estimates and the most diverse communities. This study has strengthened the hypothesis that the structure and biomass of benthic microalgal communities in lakes are regulated by habitat disturbance and water clarity, both of which are expected to respond to climate change and eutrophication. The degree to which these structural responses reflect functional performance requires clarification.     

Winter phytoplankton communities in different depths of three mesotrophic lakes (Łęczna-Włodawa Lakeland, Eastern Poland)

Phytoplankton samples were collected from three mesotrophic lakes: Piaseczno, Rogóźno and Krasne during winter seasons (from January to March). The samples were analyzed for species analysis and abundance of planktonic algae in relation to different depths of water column (0–7 m). Selected water physical-chemical parameters were also measured. Abundance of phytoplankton depended strongly on the thickness of snow and ice cover or mixing conditions. The maximal phytoplankton total number reached about 5 × 10⁶ ind. L⁻¹ beneath the clear ice in the Krasne Lake, minimal numbers were recorded under the thick snow and ice layers in the Piaseczno Lake (2 × 10³ ind. L⁻¹). The winter phytoplankton communities were dominated by flagellates principally cryptomonads (Cryptomonas spp. Rhodomonas minuta), euglenophytes (Trachelomonas volvocina, T. volvocinopsis), dinoflagellates (Peridinium bipes, Gymnodinium helveticum) and chrysophytes (Mallomonas elongata, M. akrokomos, Dinobryon sociale) or non-motile small species of blue-green algae (e.g. Rhabdoderma lineare, Limnothrix redekei), diatoms (Stephanodiscus spp., Asterionella formosa), and green algae (e.g. Scenedesmus spp., Monoraphidium spp.). Phytoplankton abundance and structure showed differentiation during the winter season and along the water column as well.     

The microphytobenthos of Königshafen—spatial and seasonal distribution on a sandy tidal flat

A microphytobenthic species composition of a tidal flat in the northern Wadden Sea was analysed regarding cell numbers and biomass (in carbon units). The three sampling sites differed in tidal inundation from 15 cm to about 90 cm water depth at high tide. The sediment was sandy at all three stations. A cluster analysis revealed a separation of the benthic diatoms into three areas: aNereis-Corophium-belt, a seagrass-bed and theArenicola-flat. Small epipsammic diatoms were most abundant and dominated the microalgal biomass. A microphytobenthic “spring bloom” even started beneath the ice cover of the flat in January. Lowest values of cell numbers and biomass of benthic microalgae were found in summer. Highest values were measured in the uppermost area (Nereis-Corophium-belt), and only here was an autumnal increase of benthic microalgae found. Further cluster analysis within each of the three areas revealed seasonal differences although the majority of species were present all year round. Many species were most abundant in spring, and some showed a bimodal distribution (spring-autumn) in the year of investigation.     

Effects of low nitrogen-phosphorus ratios in the phytoplankton community in Laguna de Bay, a shallow eutrophic lake in the Philippines

The effects of low nitrogen-phosphorus ratios on microalgae from a large eutrophic freshwater lake in the Philippines were investigated. Natural microalgal populations from Laguna de Bay, the largest lake in the Philippines, were cultured using three different nitrogen-phosphorus weight ratios (2N:1P; 6N:1P and 12N:1P) at two phosphorus concentrations (0.25 and 0.5 mg l^–1) in each case. The growth and genera composition of the cultures under the different treatments were followed for a 12-week period. Community level responses were assessed based on species richness (s), Shannon-Wiener Index (H), Simpson Index () and Evenness (J). Among the different microalgal groups, only the chlorophytes showed a significantly higher density in response to the 12N:1P treatment at the higher P concentration, indicating that the nutrient ratio had a significant interaction with the nutrient levels used in the experiments. The genera found in the different treatments were generally similar; however, the degree of dominance of some varied with treatment during the experiment. The succession of dominant genera also differed among the N:P treatments. The diatoms like Fragilaria, Aulacoseira (= Melosira) and Nitzschia dominated the lowest N:P. On the other hand, chlorophytes (Kirchneriella and Scenedesmus) dominated the highest N:P treatment, particularly from the second to the seventh week of the experiments with the diatoms becoming co-dominant only towards the eighth week until the end of the experimental. The 6N:1P treatment showed a mixed dominance between the diatoms and the chlorophyte genera. The various indices of diversity indicate significantly lower diversity only in the 12N:1P at 0.5 mg l^–1 P and not in 12N:1P at 0.25 mg l^–1 P.     

Settlement, growth and survival of abalone, Haliotis discus hannai, in response to eight monospecific benthic diatoms

The settlement, early growth and survival of the larval abalone Haliotis discus hannai in response to eight monospecific benthic diatoms were examined in the laboratory. Postlarvae showed active settling and feeding behaviour in all diatom species and in naturally occurring diatoms. Larval settlement rates differed significantly between experimental substrata after 24 h and 48 h. Nitzschia sp. (96.67 %), Hantzschia amphioxys var. leptocephala (95.00 %) and Navicula seminulum (90.00 %) strongly induced larval settlement of H. discus hannai. Postlarvae could feed on benthic diatoms (< 36 μm in shell length) with both weak and strong adhesion on the 4th day after settlement. Greatest growth (shell length) occurred on Nitzschia sp. (786.84 μm ± 2.50 SE and 773.09 μm ± 2.09 SE). Survival of postlarvae was also greatest on Nitzschia sp. (95.33 % ± 1.45 SE). These results indicate the effectiveness of Nitzschia sp., H. amphioxys var. leptocephala, N. seminulum, Rhaphoneis surirella and Navicula corymbosa as single species over natural diatoms in larval settlement and postlarvae growth of H. discus hannai. Thus, Nitzschia sp. has the best potential diet for larval settlement and postlarvae growth of H. discus hannai. H. amphioxys var. leptocephala and N. seminulum can be used as cues to induce larvae settlement, and R. surirella and N. corymbosa can be used as food for growing postlarval.     

Promiscuous arbuscular mycorrhizal symbiosis of yam (Dioscorea spp.), a key staple crop in West Africa

Yam (Dioscorea spp.) is a tuberous staple food crop of major importance in the sub-Saharan savannas of West Africa. Optimal yields commonly are obtained only in the first year following slash-and-burn in the shifting cultivation systems. It appears that the yield decline in subsequent years is not merely caused by soil nutrient depletion but might be due to a loss of the beneficial soil microflora, including arbuscular mycorrhizal fungi (AMF), associated with tropical “tree-aspect” savannas and dry forests that are the natural habitats of the wild relatives of yam. Our objective was to study the AMF communities of natural savannas and adjacent yam fields in the Southern Guinea savanna of Benin. AMF were identified by morphotyping spores in the soil from the field sites and in AMF trap cultures with Sorghum bicolor and yam (Dioscorea rotundata and Dioscorea cayenensis) as bait plants. AMF species richness was higher in the savanna than in the yam-field soils (18–25 vs. 11–16 spp.), but similar for both ecosystems (29–36 spp.) according to the observations in trap cultures. Inoculation of trap cultures with soil sampled during the dry season led to high AMF root colonization, spore production, and species richness (overall 45 spp.) whereas inoculation with wet-season soil was inefficient (two spp. only). The use of D. cayenensis and D. rotundata as baits yielded 28 and 29 AMF species, respectively, and S. bicolor 37 species. AMF root colonization, however, was higher in yam than in sorghum (70–95 vs. 11–20%). After 8 months of trap culturing, the mycorrhizal yam had a higher tuber biomass than the nonmycorrhizal controls. The AMF actually colonizing D. rotundata roots in the field were also studied using a novel field sampling procedure for molecular analyses. Multiple phylotaxa were detected that corresponded with the spore morphotypes observed. It is, therefore, likely that the legacy of indigenous AMF from the natural savanna plays a crucial role for yam productivity, particularly in the low-input traditional farming systems prevailing in West Africa.     

Differential Responses of Soil Organic Carbon Fractions and Carbon Turnover Related Enzyme Activities to Wheat Straw Incorporation in Subtropical China

Soil organic carbon (SOC) fractions and C turnover related enzyme activities are essential for nutrient cycling. This is because they are regarded as important indicators of soil fertility and quality. We measured the effects of wheat straw incorporation on SOC fractions and C turnover related enzyme activities in a paddy field in subtropical China. Soil samples were collected from 0–10 cm and 10–20 cm depths after rice harvesting. The total SOC concentrations were higher in the high rate of wheat straw incorporation treatment (NPKS2) than in the not fertilized control (CK) (P < 0.05). The concentrations of labile C fractions [i.e., water soluble organic C (WSOC), hot-water soluble organic C (HWSOC), microbial biomass C (MBC), and easily oxidizable C (EOC)], were higher in the moderate NPKS1 and NPKS2 treatments than in CK and the fertilized treatment without straw (NPK) (P < 0.05). The geometric means of labile C (GMC) and C pool management index (CPMI) values were highest in NPKS2 (P < 0.05). The SOC concentrations correlated positively with the labile C fractions (P < 0.05). Soil cellulase activity and the geometric mean of enzyme activities (GMea) were higher in NPKS2 than in CK in all soil layers (P < 0.05), and the invertase activity was higher in NPKS2 than in CK in the 0–10 cm layer (P < 0.05). Stepwise multiple linear regression indicated that the formation of the SOC, WSOC, HWSOC, MBC, and EOC was mostly enhanced by the cellulase and invertase activities (P < 0.05). Therefore, the high rate of wheat straw incorporation may be recommended to increase soil C pool levels and soil fertility in subtropical paddy soils.     

Indigenous Populations of Three Closely Related <Emphasis Type="Italic">Lysobacter</Emphasis> spp. in Agricultural Soils Using Real-Time PCR

Previous research had shown that three closely related species of Lysobacter, i.e., Lysobacter antibioticus, Lysobacter capsici, and Lysobacter gummosus, were present in different Rhizoctonia-suppressive soils. However, the population dynamics of these three Lysobacter spp. in different habitats remains unknown. Therefore, a specific primer–probe combination was designed for the combined quantification of these three Lysobacter spp. using TaqMan. Strains of the three target species were efficiently detected with TaqMan, whereas related non-target strains of Lysobacter enzymogenes and Xanthomonas campestris were not or only weakly amplified. Indigenous Lysobacter populations were analyzed in soils of 10 organic farms in the Netherlands during three subsequent years with TaqMan. These soils differed in soil characteristics and crop rotation. Additionally, Lysobacter populations in rhizosphere and bulk soil of different crops on one of these farms were studied. In acid sandy soils low Lysobacter populations were present, whereas pH neutral clay soils contained high populations (respectively, <4.0–5.87 and 6.22–6.95 log gene copy numbers g⁻¹ soil). Clay content, pH and C/N ratio, but not organic matter content in soil, correlated with higher Lysobacter populations. Unexpectedly, different crops did not significantly influence population size of the three Lysobacter spp. and their populations were barely higher in rhizosphere than in bulk soil.     

Diatom composition and biomass variability in nearshore waters of Maxwell Bay, Antarctica, during the 1992/1993 austral summer

 Diatom composition and biomass were investigated in the nearshore water (<30 m in depth) of Maxwell Bay, Antarctica during the 1992/1993 austral summer. Epiphytic or epilithic diatoms such as Fragilaria striatula, Achnanthes brevipes var. angustata and Licmophora spp. dominated the water column microalgal populations. Within the bay, diatom biomass in surface water was several times higher at the nearshore (2.4–14 μg C l^-1) than at the offshore stations (>100 m) (1.2–3.2 μg C l^-1) with a dramatic decrease towards the bay mouth. Benthic forms accounted for >90% of diatom carbon in all nearshore stations, while in the offshore stations planktonic forms such as Thalassiosira antarctica predominated (50–>90%). Microscopic examination revealed that many of these diatoms have become detached from a variety of macroalgae growing in the intertidal and shallow subtidal bottoms. Epiphytic diatoms persistently dominated during a 19-day period in the water column at a fixed nearshore station, and the biomass of these diatoms fluctuated from 0.86 to 53 μg C l^-1. A positive correlation between diatom biomass and wind speed strongly suggests that wind-driven resuspension of benthic forms is the major mechanism increasing diatom biomass in the water column. Received: 28 April 1995/Accepted: 1 April 1996     

Detection of Sphingomonas spp in soil by PCR and sphingolipid biomarker analysis

Sphingomonas spp possess unique abilities to degrade refractory contaminants and are found ubiquitously in the environment. We developed Sphingomonas genus-specific PCR primers (SPf-190 and SPr1-852) which showed specific amplification of a 627-bp 16S rDNA fragment from Sphingomonas spp. A PCR assay using these Sphingomonas specific primers was developed to detect Sphingomonas aromaticivorans B0695R in three texturally distinct soil types, showing detection limits between 1.3–2.2 × 10³ CFU g⁻¹ dry soil. A sphingolipid extraction protocol was also developed to monitor Sphingomonas populations in soil quantitatively. The detection limit of the assay was 20 pmol g⁻¹ dry soil, equivalent to about 3 × 10⁵ cells g⁻¹ dry soil. Survival of S. aromaticivorans B0695R was monitored in the three different soils by antibiotic selective plate counting, PCR and sphingolipid analysis. All three approaches showed that the B0695R cells persisted in the low biomass Sequatchie sub-soil at about 3–5 × 10⁷cells g⁻¹ dry soil. In comparison to the plate counting assay, both the PCR and sphingolipid analysis detected a significantly higher level of B0695R cells in the clay soil and Sequatchie top-soil, indicating the possibility of the presence of viable but non-culturable B0695R cells in the soils. The combination of PCR and sphingolipid analysis may provide a more realistic estimation of Sphingomonas population in the environment. Received 17 March 1999/ Accepted in revised form 07 April 1999     

Distribution of chlorophytic phytoplankton in Northern Thailand

The distribution of phytoplankton was investigated in standing water bodies such as reservoirs, ponds and marshes. Thirty sampling sites in Northern Thailand were studied during 1998–2005. The water quality could be classified as oligotrophic-mesotrophic to eutrophic status. Twelve families, 51 genera and 181 species of chlorophytic phytoplankton were found. The dominant genera were Staurastrum spp., Cosmarium spp., Scenedesmus spp. and Pediastrum spp. The distribution of these species was mainly affected by the water quality. Presented at the International Symposium Biology and Taxonomy of Green Algae V, Smolenice, June 26–29, 2007, Slovakia.     

Multiple losses of photosynthesis in Nitzschia (Bacillariophyceae)

In order to obtain insights into the evolution of colorless (apochlorotic) diatoms, we investigated newly established apochlorotic strains of Nitzschia spp. using light and electron microscopy and molecular phylogenetic analyses. Fluorescence microscopic observations demonstrated that the apochlorotic diatoms lack chlorophylls. Transmission electron microscopy of two apochlorotic strains also demonstrated that their plastids lacked thylakoids; instead, having four‐membrane‐bound organelles without thylakoids, similar to nonphotosynthetic plastid remnants. From the apochlorotic strains, we also found plastid small subunit rRNA genes that were unusually long branched in phylogenetic analyses, as observed in other nonphotosynthetic plastids. Molecular phylogenetic analysis of the nucleus‐encoded large subunit rRNA genes showed eight distinct lineages for apochlorotic diatoms. The eight apochlorotic lineages were not monophyletic, suggesting that the loss of photosynthesis took place multiple times independently within Nitzschia. Several diatoms, including Nitzschia spp., are mixotrophic, which is an expected mode of nutrition that would help explain the evolutionary switch from a photosynthetic lifestyle to a heterotrophic lifestyle.     

Microbiological and chemical properties of soil associated with macropores at different depths in a red-duplex soil in NSW Australia

Some agricultural soils in South Eastern Australia with duplex profiles have subsoils with high bulk density, which may limit root penetration, water uptake and crop yield. In these soils, a large proportion (up to 80%) of plant roots maybe preferentially located within the macropores or in the soil within 1–10 mm of the macropores, a zone defined as the macropore sheath (MPS). The chemical and microbiological properties of MPS soil manually dissected from a 1–3 mm wide region surrounding the macropores was compared with that of adjacent bulk soil (>10 mm from macropores) at 4 soil depths (0–20 cm, 20–40 cm, 40–60 cm and 60–80 cm). Compared to the bulk soil, the MPS soil had higher organic C, total N, bicarbonate-extractable P, Ca⁺, Cu, Fe and Mn and supported higher populations of bacteria, fungi, actinomycetes, Pseudomonas spp., Bacillus spp., cellulolytic bacteria, cellulolytic fungi, nitrifying bacteria and the root pathogen Pythium.In addition, analysis of carbon substrate utilization patterns showed the microbial community associated with the MPS soil to have higher metabolic activity and greater functional diversity than the microbial community associated with the bulk soil at all soil depths. Phospholipid fatty acids associated with bacteria and fungi were also shown to be present in higher relative amounts in the MPS soil compared to the bulk soil. Whilst populations of microbial functional groups in the MPS and the bulk soil declined with increasing soil depth, the differentiation between the two soils in microbiological properties occurred at all soil depths. Soil aggregates (< 0.5 mm diameter) associated with plant roots located within macropores were found to support a microbial community that was quantitatively and functionally different to that in the MPS soil and the bulk soil at all soil depths. The microbial community associated with these soil aggregates thus represented a third recognizable environment for plant roots and microorganisms in the subsoil.     

Soil microbial parameters and stability of soil aggregate fractions under different grassland communities on the Loess Plateau,China

Over-grazing and large-scale monocultures on the Loess plateau in China have caused serious soil erosion by water and wind. Grassland revegetation has been reported as one of the most effective counter measures. Therefore, we investigated soil aggregation, aggregate stability and soil microbial activities as key parameters for soil remediation through grassland revegetation. The results showed that soil microbial biomass carbon (Cmic) and microbial biomass nitrogen (Nmic) increased under revegetated grass communities compared to cropland and overgrazed pastures and were higher in surface layers (0–10 cm) than in the subsurface (10–20 cm). Although there are variations between the four investigated grassland communities, their values were 10 to 50 times higher in comparison to the cropland and overgrazed pastures, similar to the increase in soil enzyme activities, such as β-glucosidase and β-glucosaminidase. Soil aggregate stability (SAS) showed clear differences between the different land uses with two main soil aggregate fractions measured by ultra sound: < 63 μm and 100–250 μm, with approximately 70% and 10% of the total soil volume respectively. We also found positive correlations between SAS and soil microbial parameters, such as Cmic, Nmic, and soil enzyme activities. From this, we concluded that revegetation of eroded soils by grasses accelerates soil rehabilitation.     

Benthic microalgae in coral reef sediments of the southern Great Barrier Reef,Australia

The abundance and productivity of benthic microalgae in coral reef sediments are poorly known compared with other, more conspicuous (e.g. coral zooxanthellae, macroalgae) primary producers of coral reef habitats. A survey of the distribution, biomass, and productivity of benthic microalgae on a platform reef flat and in a cross-shelf transect in the southern Great Barrier Reef indicated that benthic microalgae are ubiquitous, abundant (up to 995.0 mg chlorophyll (chl) a m^–2), and productive (up to 110 mg O₂ m^–2 h^–1) components of the reef ecosystem. Concentrations of benthic microalgae, expressed as chlorophyll a per surface area, were approximately 100-fold greater than the integrated water column concentrations of microalgae throughout the region. Benthic microalgal biomass was greater on the shallow water platform reef than in the deeper waters of the cross-shelf transect. In both areas the benthic microalgal communities had a similar composition, dominated by pennate diatoms, dinoflagellates, and cyanobacteria. Benthic microalgal populations were potentially nutrient-limited, based on responses to nitrogen and phosphorus enrichments in short-term (7-day) microcosm experiments. Benthic microalgal productivity, measured by O₂ evolution, indicated productive communities responsive to light and nutrient availability. The benthic microalgal concentrations observed (92–995 mg chl a m^–2) were high relative to other reports, particularly compared with temperate regions. This abundance of productive plants in both reef and shelf sediments in the southern Great Barrier Reef suggests that benthic microalgae are key components of coral reef ecosystems.Communicated by Environmental Editor, B.C. Hatcher