Seasonal Differences in Extinction and Colonization Drive Occupancy Dynamics of an Imperilled Amphibian

A detailed understanding of the population dynamics of many amphibian species is lacking despite concerns about declining amphibian biodiversity and abundance. This paper explores temporal patterns of occupancy and underlying extinction and colonization dynamics in a regionally imperiled amphibian species, the Northern leopard frog (Lithobates pipiens) in Alberta. Our study contributes to elucidating regional occupancy dynamics at northern latitudes, where climate extremes likely have a profound effect on seasonal occupancy. The primary advantage of our study is its wide geographic scale (60,000 km²) and the use of repeat visual surveys each spring and summer from 2009–2013. We find that occupancy varied more dramatically between seasons than years, with low spring and higher summer occupancy. Between spring and summer, colonization was high and extinction low; inversely, colonization was low and extinction high over the winter. The dynamics of extinction and colonization are complex, making conservation management challenging. Our results reveal that Northern leopard frog occupancy was constant over the last five years and thus there is no evidence of decline or recovery within our study area. Changes to equilibrium occupancy are most sensitive to increasing colonization in the spring or declining extinction in the summer. Therefore, conservation and management efforts should target actions that are likely to increase spring colonization; this could be achieved through translocations or improving the quality or access to breeding habitat. Because summer occupancy is already high, it may be difficult to improve further. Nevertheless, summer extinction could be reduced by predator control, increasing water quality or hydroperiod of wetlands, or increasing the quality or quantity of summer habitat.     

High dispersal in a frog species suggests that it is vulnerable to habitat fragmentation

Global losses of amphibian populations are a major conservation concern and their causes have generated substantial debate. Habitat fragmentation is considered one important cause of amphibian decline. However, if fragmentation is to be invoked as a mechanism of amphibian decline, it must first be established that dispersal is prevalent among contiguous amphibian populations using formal movement estimators. In contrast, if dispersal is naturally low in amphibians, fragmentation can be disregarded as a cause of amphibian declines and conservation efforts can be focused elsewhere. We examined dispersal rates in Columbia spotted frogs (Rana luteiventris) using capture-recapture analysis of over 10,000 frogs in combination with genetic analysis of microsatellite loci in replicate basins. We found that frogs had exceptionally high juvenile dispersal rates (up to 62% annually) over long distances (>5km), large elevation gains (>750m) and steep inclines (36 degrees incline over 2km) that were corroborated by genetic data showing high gene flow. These findings show that dispersal is an important life-history feature of some amphibians and suggest that habitat fragmentation is a serious threat to amphibian persistence.     

Cattle grazing and conservation of a meadow-dependent amphibian species in the Sierra Nevada

World-wide population declines have sharpened concern for amphibian conservation on working landscapes. Across the Sierra Nevada''s national forest lands, where almost half of native amphibian species are considered at risk, permitted livestock grazing is a notably controversial agricultural activity. Cattle (Bos taurus) grazing is thought to degrade the quality, and thus reduce occupancy, of meadow breeding habitat for amphibian species of concern such as the endemic Yosemite toad (Anaxyrus [ = Bufo] canorus). However, there is currently little quantitative information correlating cattle grazing intensity, meadow breeding habitat quality, and toad use of meadow habitat. We surveyed biotic and abiotic factors influencing cattle utilization and toad occupancy across 24 Sierra Nevada meadows to establish these correlations and inform conservation planning efforts. We utilized both traditional regression models and Bayesian structural equation modeling to investigate potential drivers of meadow habitat use by cattle and Yosemite toads. Cattle use was negatively related to meadow wetness, while toad occupancy was positively related. In mid and late season (mid July–mid September) grazing periods, cattle selected for higher forage quality diets associated with vegetation in relatively drier meadows, whereas toads were more prevalent in wetter meadows. Because cattle and toads largely occupied divergent zones along the moisture gradient, the potential for indirect or direct negative effects is likely minimized via a partitioning of the meadow habitat. During the early season, when habitat use overlap was highest, overall low grazing levels resulted in no detectable impacts on toad occupancy. Bayesian structural equation analyses supported the hypothesis that meadow hydrology influenced toad meadow occupancy, while cattle grazing intensity did not. These findings suggest cattle production and amphibian conservation can be compatible goals within this working landscape.     

基于图论的两栖类生物栖息地网络规划——以黑斑侧褶蛙为例

生物多样性保护和生物栖息地网络建设是目前我国国土空间规划的重要内容,提升生物栖息地网络的景观功能连接度对生物多样性保护具有重要作用。目前,已有研究对生物栖息地网络规划进行了探索,但在实际规划层面仍缺乏可操作性强的技术方法支撑。本研究采用图论方法,聚焦国土空间规划中生物多样性保护和生态网络建设涉及的进行生物栖息地斑块重要性评价,以确定斑块优先保护次序;寻找最优新增斑块位置,以改善生物栖息地网络景观功能连接度;依据景观功能连接度的降低程度,判断建设项目的影响或评价规划新增建设项目的潜在影响3方面内容,在雄安新区两栖类生物黑斑侧褶蛙(Pelophylax nigromaculata)栖息地网络规划中进行应用研究。结果表明: 图论方法可以有效解决上述3方面的问题;本研究识别的5个最优新增黑斑侧褶蛙栖息地位置使栖息地网络整体景观功能连接度提升19%;通过评价G45高速公路对两栖类生物栖息地网络功能连接度的影响,找出了4个穿越通道设置以减弱G45高速公路的影响。     

Measuring the meltdown: drivers of global amphibian extinction and decline

Habitat loss, climate change, over-exploitation, disease and other factors have been hypothesised in the global decline of amphibian biodiversity. However, the relative importance of and synergies among different drivers are still poorly understood. We present the largest global analysis of roughly 45% of known amphibians (2,583 species) to quantify the influences of life history, climate, human density and habitat loss on declines and extinction risk. Multi-model Bayesian inference reveals that large amphibian species with small geographic range and pronounced seasonality in temperature and precipitation are most likely to be Red-Listed by IUCN. Elevated habitat loss and human densities are also correlated with high threat risk. Range size, habitat loss and more extreme seasonality in precipitation contributed to decline risk in the 2,454 species that declined between 1980 and 2004, compared to species that were stable (n = 1,545) or had increased (n = 28). These empirical results show that amphibian species with restricted ranges should be urgently targeted for conservation.     

Habitat associations of pool-breeding amphibians in eastern Massachusetts,USA

There is a pressing need to develop a sound conservation strategy for pool-breeding amphibians, which includes gaining a better understanding of the habitat and landscape-scale characteristics associated with populations. To investigate relationships between amphibian species richness and characteristics of breeding pools and surrounding landscapes, we surveyed 85 pools in eastern Massachusetts (USA) in 1996 and 1997. A total of 11 species was detected, with most pools having 2–5 species. Pools were typically small, 77.6% were <0.2 ha, but most pools (72%) had hydroperiods that persisted at least into August in most years. Based on linear regression analyses, species richness was positively associated with three within-pool variables (pool surface area, hydroperiod, and the amount of emergent vegetation), and a landscape-level variable (presence of another breeding pool within 1 km), while one within-pool variable (tree canopy cover) exhibited a significant negative association with species richness. These within-pool habitat variables and connectivity to other breeding pools are important characteristics to consider when attempting to identify breeding sites that could provide core habitat in conservation reserves designed for the conservation of pool-breeding amphibian species richness. Conservation reserves for pool-breeding amphibian populations should include pool complexes functioning as habitat for metapopulations. Core pool habitats within such reserves should be large (0.5–1.0 ha), with seasonal hydroperiods that persist into August or that dry in some years, and with sufficient emergent vegetation to provide diverse microhabitats and refugia.     

两栖类栖息地的构建技术及效果评估

全球范围内两栖类的种类和数量急剧下降,栖息地面积减少和质量下降为重要原因之一.修复和重建两栖类栖息地是恢复两栖类种类和数量的重要手段.在城市化进程中,构建适宜的两栖类栖息地对两栖类的保护尤为关键.本研究选取上海市闵行区浦江镇的鲁汇苗木基地,于2014年5月-2016年9月开展两栖类栖息地的构建技术及效果评估研究.针对上海市常见的5种两栖类的生境需求,经过地形地貌改造、水系沟通调整和植被恢复等生态工程措施,构建了19 hm²两栖类栖息地.为评估两栖类栖息地的保护效果,采取样线法,选取5条100 m×5 m的调查样线,于多数两栖类的繁殖期(5-6月)和非繁殖期(8-9月)各调查1次,对比分析改造前(2014年)和改造后(2016年)两栖类的种类和数量.调查发现,改造前的繁殖期记录到两栖类4种,密度为(164.0±63.7) ind·hm^-2;非繁殖期4种,密度为(160.0±29.7) ind·hm^-2;改造后的繁殖期5种,密度为(560.0±159.3) ind·hm^-2;非繁殖期5种,密度为(628.0±186.2) ind·hm^-2.结果表明,通过构建适宜的两栖类栖息地,能够显著增加两栖类的种类和数量,具有较好的两栖类保护效果.本研究提出的两栖类栖息地的构建技术,为受损的两栖类栖息地的生态修复和重建以及城市林绿地的优化改造提供了参考案例.     

An expert-based landscape permeability model for assessing the impact of agricultural management on amphibian migration

The persistence of pond-breeding amphibian populations is influenced on different spatial scales ranging from the individual breeding pond to surrounding habitat patches to landscape clusters of breeding pond populations. The connectivity among breeding ponds as well as the availability of suitable terrestrial habitats surrounding the ponds plays a major role in long-term viability of amphibian species. Besides road traffic and urban structures agricultural land activity can disrupt landscape connectivity through the use of pesticides, fertilizers and physical activity such as tillage. We developed an expert-based model to assess the impact of agricultural management measures on the migration area and terrestrial habitat availability for seven amphibian species. The model is based on a Habitat Suitability Index to identify suitable terrestrial habitats and includes a landscape permeability approach. Size of migration areas, connectivity of breeding ponds and number of reachable terrestrial habitats were modeled considering species-specific migration ranges and habitat preferences. We consider how pesticides application might lead to fragmentation and isolation of amphibian breeding pond populations. Therefore the potential disrupting impact of pesticides was simulated by inflating landscape resistance to medium and high migration cost. One amphibian species showed a decrease of migration area by 48.3% and a decrease of reachable terrestrial habitats by 41.5% at high migration costs. Three additional species showed a decrease of their migration areas between 31.5 and 35.7%. At increased migration cost, some of the investigated populations were isolated at breeding pond level or restricted to pond clusters. Our model could be used to prioritize conservation efforts for pond-breeding amphibians with adequate consideration of agricultural land use and its impact on amphibian migration.     

江西赣江源区域两栖动物的群落组成和物种多样性特征

赣江发源于武夷山脉南段西麓的高山岭间,该区域独特的地理环境和气候特征蕴育了丰富的生物多样性。然而关于该区域两栖动物群落组成和物种多样性调查非常匮乏,不利于赣江源头两栖动物物种多样性的保护。于2016年4-9月期间在江西赣江源区域采用样线法调查了两栖动物的资源状况、群落组成及物种多样性特征,比较了它们在山地森林区、丘陵森林与农田区和盆地农田区3类栖息地之间的差异性。结果表明：赣江源区域分布有8科23种两栖动物,新增记录3个物种,包括尖舌浮蛙、寒露林蛙和九龙棘蛙,泽陆蛙和饰纹姬蛙为优势种。赣江源区域的两栖动物群落组成和物种多样性存在显著的季节间差异和栖息地间差异;两栖动物季节性繁殖是造成前者差异的主要因素,而土地利用类型、栖息地特征、空间距离、生活习性的物种特性等因素成就了后者差异的出现。因此,春、夏季一般有比秋季见到更高的两栖动物物种丰富度和多样性;山地森林区的两栖动物物种丰富度和多样性最高,盆地农田区次之,丘陵森林与农田区的最低。山地森林区应成为赣江源区域两栖动物多样性保护的优先区域。国家Ⅱ级重点保护野生动物虎纹蛙,在3类栖息地中均有分布,且在盆地农田区和山地森林区能见到更多个体,但农田区分布的虎纹蛙遭受到更大的威胁,建议加强对农田区虎纹蛙及其栖息地的保护。     

Integrating species life-history traits and patterns of deforestation in amphibian conservation planning

Aim  To identify priority areas for amphibian conservation in southeastern Brazil, by integrating species life-history traits and patterns of deforestation.
Location  State of São Paulo, Brazil.
Methods  We used the software M arxan to evaluate different scenarios of amphibian conservation planning. Our approach differs from previous methods by explicitly including two different landscape metrics; habitat split for species with aquatic larvae, and habitat loss for species with terrestrial development. We evaluated the effect of habitat requirements by classifying species breeding habitats in five categories (flowing water, still water permanent, still water temporary, bromeliad or bamboo, and terrestrial). We performed analyses using two scales, grid cells and watersheds and also considered nature preserves as protected areas.
Results  We found contrasting patterns of deforestation between coastal and inland regions. Seventy-six grid cells and 14 watersheds are capable of representing each species at least once. When accounting for grid cells already protected in state and national parks and considering species habitat requirements we found 16 high-priority grid cells for species with one or two reproductive habitats, and only one cell representing species with four habitat requirements. Key areas for the conservation of species breeding in flowing and permanent still waters are concentrated in southern state, while those for amphibians breeding in temporary ponds are concentrated in central to eastern zones. Eastern highland zones are key areas for preserving species breeding terrestrially by direct or indirect development. Species breeding in bromeliads and bamboos are already well represented in protected areas.
Main conclusions  Our results emphasize the need to integrate information on landscape configuration and species life-history traits to produce more ecologically relevant conservation strategies.     

Wetlands classification for amphibian conservation in Mediterranean landscapes

Habitat fragmentation and alteration have been described as the major factors relating to the decline observed in several amphibian species. In Spain, these processes are mainly associated with the large agricultural land area, the widespread use of toxic substances, and the agricultural practices used. All these aggressions affect wetlands and their watersheds, which are essential aquatic systems for many amphibian species. In an effort to discover where conservation and specific action plans could be more necessary, this study relates the amphibian richness in 28 representative Mediterranean wetlands to their characteristics and the activities carried out on their watershed. The required information considers diverse wetland variables. Our results show that watershed habitat heterogeneity is significantly positively correlated with amphibian richness, while the percentage of the watershed area devoted to olive cultivation is negatively correlated with it. The results allow us to classify wetlands according to their importance for amphibian conservation. Our results also show that 80% of the studied wetlands need specific action plans. Especially, more sustainable cultivation methods are required considering drastic changes in current agricultural practices. Finally, our data provides a baseline to understand future alterations due to agricultural practices.     

Conservation needs of amphibians in China: A review

The conservation status of all the amphibians in China is analyzed,and the country is shown to be a global priority for conservation in comparison to many other countries of the world.Three Chinese regions are particularly rich in amphibian diversity:Hengduan,Nanling,and Wuyi mountains.Sala-manders are more threatened than frogs and toads.Several smaller families show a high propensity to become seriously threatened:Bombinatoridae,Cryptobranchidae,Hynobiidae and Salamandridae.Like other parts of the world,stream-breeding,high-elevation forest amphibians have a much higher likeli-hood of being seriously threatened.Habitat loss,pollution,and over-harvesting are the most serious threats to Chinese amphibians.Over-harvesting is a less pervasive threat than habitat loss,but it is more likely to drive a species into rapid decline.Five conservation challenges are mentioned with recommendations for the highest priority research and conservation actions.     

Conservation needs of amphibians in China: A review

The conservation status of all the amphibians in China is analyzed, and the country is shown to be a global priority for conservation in comparison to many other countries of the world. Three Chinese regions are particularly rich in amphibian diversity: Hengduan, Nanling, and Wuyi mountains. Salamanders are more threatened than frogs and toads. Several smaller families show a high propensity to become seriously threatened: Bombinatoridae, Cryptobranchidae, Hynobiidae and Salamandridae. Like other parts of the world, stream-breeding, high-elevation forest amphibians have a much higher likelihood of being seriously threatened. Habitat loss, pollution, and over-harvesting are the most serious threats to Chinese amphibians. Over-harvesting is a less pervasive threat than habitat loss, but it is more likely to drive a species into rapid decline. Five conservation challenges are mentioned with recommendations for the highest priority research and conservation actions.     

Selecting for extinction: nonrandom disease-associated extinction homogenizes amphibian biotas

Studying the patterns in which local extinctions occur is critical to understanding how extinctions affect biodiversity at local, regional and global spatial scales. To understand the importance of patterns of extinction at a regional spatial scale, we use data from extirpations associated with a widespread pathogenic agent of amphibian decline, Batrachochytrium dendrobatidis ( Bd ) as a model system. We apply novel null model analyses to these data to determine whether recent extirpations associated with Bd have resulted in selective extinction and homogenization of diverse tropical American amphibian biotas. We find that Bd -associated extinctions in this region were nonrandom and disproportionately, but not exclusively, affected low-occupancy and endemic species, resulting in homogenization of the remnant amphibian fauna. The pattern of extirpations also resulted in phylogenetic homogenization at the family level and ecological homogenization of reproductive mode and habitat association. Additionally, many more species were extirpated from the region than would be expected if extirpations occurred randomly. Our results indicate that amphibian declines in this region are an extinction filter, reducing regional amphibian biodiversity to highly similar relict assemblages and ultimately causing amplified biodiversity loss at regional and global scales.     

Modeling Habitat Split: Landscape and Life History Traits Determine Amphibian Extinction Thresholds

Habitat split is a major force behind the worldwide decline of amphibian populations, causing community change in richness and species composition. In fragmented landscapes, natural remnants, the terrestrial habitat of the adults, are frequently separated from streams, the aquatic habitat of the larvae. An important question is how this landscape configuration affects population levels and if it can drive species to extinction locally. Here, we put forward the first theoretical model on habitat split which is particularly concerned on how split distance – the distance between the two required habitats – affects population size and persistence in isolated fragments. Our diffusive model shows that habitat split alone is able to generate extinction thresholds. Fragments occurring between the aquatic habitat and a given critical split distance are expected to hold viable populations, while fragments located farther away are expected to be unoccupied. Species with higher reproductive success and higher diffusion rate of post-metamorphic youngs are expected to have farther critical split distances. Furthermore, the model indicates that negative effects of habitat split are poorly compensated by positive effects of fragment size. The habitat split model improves our understanding about spatially structured populations and has relevant implications for landscape design for conservation. It puts on a firm theoretical basis the relation between habitat split and the decline of amphibian populations.     

Dispersal and the metapopulation paradigm in amphibian ecology and conservation: are all amphibian populations metapopulations?

Amphibians are frequently characterized as having limited dispersal abilities, strong site fidelity and spatially disjunct breeding habitat. As such, pond‐breeding species are often alleged to form metapopulations. Amphibian species worldwide appear to be suffering population level declines caused, at least in part, by the degradation and fragmentation of habitat and the intervening areas between habitat patches. If the simplification of amphibians occupying metapopulations is accurate, then a regionally based conservation strategy, informed by metapopulation theory, is a powerful tool to estimate the isolation and extinction risk of ponds or populations. However, to date no attempt to assess the class‐wide generalization of amphibian populations as metapopulations has been made. We reviewed the literature on amphibians as metapopulations (53 journal articles or theses) and amphibian dispersal (166 journal articles or theses for 53 anuran species and 37 salamander species) to evaluate whether the conditions for metapopulation structure had been tested, whether pond isolation was based only on the assumption of limited dispersal, and whether amphibian dispersal was uniformly limited. We found that in the majority of cases (74%) the assumptions of the metapopulation paradigm were not tested. Breeding patch isolation via limited dispersal and/or strong site fidelity was the most frequently implicated or tested metapopulation condition, however we found strong evidence that amphibian dispersal is not as uniformly limited as is often thought. The frequency distribution of maximum movements for anurans and salamanders was well described by an inverse power law. This relationship predicts that distances beneath 11–13 and 8–9 km, respectively, are in a range that they may receive one emigrating individual. Populations isolated by distances approaching this range are perhaps more likely to exhibit metapopulation structure than less isolated populations. Those studies that covered larger areas also tended to report longer maximum movement distances – a pattern with implications for the design of mark‐recapture studies. Caution should be exercised in the application of the metapopulation approach to amphibian population conservation. Some amphibian populations are structured as metapopulations – but not all.     

Emerging conflicts for the environmental use of water in high-valuable rangelands. Can livestock water ponds be managed as artificial wetlands for amphibians?

Continental freshwater, irrespective of its origin, natural or artificial, may contribute significantly to biodiversity conservation. Because of the decline of natural aquatic habitats, an increasing concern exists about the role of water ponds as spots of biological richness. Amphibians are strongly at risk since the loss of aquatic habitats, among other factors, causes the isolation of their populations. The implementation of livestock ponds as artificial wetlands may be an effective measure for enhancing amphibian decaying communities. This policy assumes that managing ponds for wildlife conservation purposes joins livestock welfare requirements, but this hypothesis has not been specifically studied. The purpose of this research is to evaluate this premise in the Urbasa-Andia Natural Park, a high-valuable environmental area that holds a relevant amphibian community and has an extended grazing history. We analyse the relationship between the amphibian assemblages present and the design and attributes of a variety of drinking points previously chosen by embodying a high environmental heterogeneity of water resources. The results of this study indicate that the quality of the water stored varies largely along the season, degrading severely in summer because of the wading of animals (in unfenced ponds) and the low water recharge. The contamination, caused by increased enteric microorganisms and dissolved N, is likely to affect livestock more severely than amphibian populations, since the sensitive breeding stage of many amphibians occurs before the loss of water quality. Although the quality of the water is essential, and mammals (wild and domestic) have an influence on it, other factors that are less considered by environmental managers emerge as main drivers of amphibian assemblages, such as hydroperiod, predator occurrence and the environmental quality of the surrounding habitat.     

Ecological correlates of species richness and population abundance patterns in the amphibian communities from the Albertine Rift, East Africa

Broad-scale ecological correlates affecting species richness and abundance patterns of amphibians were studied in 37 sampling sites from 15 independent protected areas in the Albertine Rift, East Africa. Amphibians were caught by a combination of sampling techniques, including time-constrained visual searching, pitfalls with drift fences, dip-netting, and opportunistic observations. In total, 73 species of amphibians were recorded, some of them occurring only once in the samples and some more than 1,000 times. Once relative field effort at each study site was taken into account, multivariate regression analyses showed that amphibian species richness was positively influenced by percent canopy cover and altitude. On the other hand, population abundance was influenced by a combination of three different variables: positively by percent canopy cover and rainfall, and negatively by human activities. The rainforest proved to play a very important role in the ecological distribution of species, with about 63% of the species being in one way or the other linked to it either as forest specialists, inhabitants of forest ecotones, or inhabitants of both forests and forest ecotones. These results have wide conservation implications. Indeed, as the mature rainforest habitat (especially at mid altitude-highland) proved to be the key habitat for the amphibian communities of the Albertine Rift, it should be a priority to recommend an accurate management and conservation of mature forests in local and regional protection programs.     

Integrating field surveys and remote sensing data to study distribution, habitat use and conservation status of the herpetofauna of the Comoro Islands

We studied the non-marine reptile and amphibian species of the volcanic Comoro archipelago in the Western Indian Ocean, a poorly known island herpetofauna comprising numerous microendemic species of potentially high extinction risk and widespread, non-endemic and often invasive taxa. According to our data, the Comoro islands are inhabited by two amphibian species and at least 28 species of reptiles although ongoing genetic studies and unconfirmed historical records suggest an even higher species diversity. 14 of the 28 currently recognized species of terrestrial reptiles (50%) and the two amphibians are endemic to a single island or to the Comoro archipelago. The majority of species are most abundant at low elevation. However, a few endemic species, like the gekkonid lizards Paroedura sanctijohannis and Phelsuma nigristriata, are more common in or even confined to higher altitudes. We created habitat maps from remotely sensed data in combination with detailed species distribution maps produced using comprehensive data from field surveys between 2000 and 2010, literature, and historical locality records based on specimens in zoological collections. Using these data, we assessed the conservation status of the endemic terrestrial reptiles and amphibians according to the IUCN Red List criteria. Our results show that although little area of natural forest remains on the Comoros, many species are abundant in degraded forest or plantations. Competition and predation by invasive species appears to be the most important threat factor for the endemic herpetofauna, together with habitat degradation and destruction, which further favours invasive species. We propose the status Endangered for three species, Vulnerable for one species, Near Threatened for six species, Least Concern for four and Data Deficient for two species. The endemic subspecies Oplurus cuvieri comorensis is proposed for the status Critically Endangered. Based on the results of this study, seven areas of importance for reptile and amphibian conservation on the Comoros are identified. This study shows how remote sensing data can contribute to increasing accuracy and objectiveness of conservation assessments.     

Reproductive traits associated with species turnover of amphibians in Amazonia and its Andean slopes

Assembly of ecological communities is important for the conservation of ecosystems, predicting perturbation impacts, and understanding the origin and loss of biodiversity. We tested how amphibian communities are assembled by neutral and niche‐based mechanisms, such as habitat filtering. Species richness, β‐diversities, and reproductive traits of amphibians were evaluated at local scale in seven habitats at different elevation and disturbance levels in Wisui Biological Station, Morona‐Santiago, Ecuador, on the foothills of the Cordillera del Kutukú; and at regional scale using 109 localities across evergreen forests of Amazonia and its Andean slopes (0–3,900 m a.s.l.). At local scale, species composition showed strong differences among habitats, explained mainly by turnover. Reproductive modes occurred differently across habitats (e.g., prevalence of direct developers at high elevation, where breeding in ground level water disappears). At regional scale, elevation was the most important factor explaining the changes in species richness, reproductive trait occurrences, and biotic dissimilarities. Species number in all groups decreased with elevation except for those with lotic tadpoles and terrestrial reproduction stages. Seasonality, annual precipitation, and relative humidity partially explained the occurrence of some reproductive traits. Biotic dissimilarities were also mostly caused by turnover rather than nestedness and were particularly high in montane and foothill sites. Within lowlands, geographic distance explained more variability than elevation. Habitat filtering was supported by the different occurrence of reproductive traits according to elevation, water availability, and breeding microhabitats at both scales, as well as other assembly mechanisms based in biotic interactions at local scale. Human‐generated land use changes in Amazonia and its Andean slopes reduce local amphibian biodiversity by alteration of primary forests and loss of their microhabitats and the interaction network that maintains their unique amphibian assemblages with different reproductive strategies.