Focus Issue on Plant Cell Walls: A Comprehensive Toolkit of Plant Cell Wall Glycan-Directed Monoclonal Antibodies

A collection of 130 new plant cell wall glycan-directed monoclonal antibodies (mAbs) was generated with the aim of facilitating in-depth analysis of cell wall glycans. An enzyme-linked immunosorbent assay-based screen against a diverse panel of 54 plant polysaccharides was used to characterize the binding patterns of these new mAbs, together with 50 other previously generated mAbs, against plant cell wall glycans. Hierarchical clustering analysis was used to group these mAbs based on the polysaccharide recognition patterns observed. The mAb groupings in the resulting cladogram were further verified by immunolocalization studies in Arabidopsis (Arabidopsis thaliana) stems. The mAbs could be resolved into 19 clades of antibodies that recognize distinct epitopes present on all major classes of plant cell wall glycans, including arabinogalactans (both protein- and polysaccharide-linked), pectins (homogalacturonan, rhamnogalacturonan I), xyloglucans, xylans, mannans, and glucans. In most cases, multiple subclades of antibodies were observed to bind to each glycan class, suggesting that the mAbs in these subgroups recognize distinct epitopes present on the cell wall glycans. The epitopes recognized by many of the mAbs in the toolkit, particularly those recognizing arabinose- and/or galactose-containing structures, are present on more than one glycan class, consistent with the known structural diversity and complexity of plant cell wall glycans. Thus, these cell wall glycan-directed mAbs should be viewed and utilized as epitope-specific, rather than polymer-specific, probes. The current world-wide toolkit of approximately 180 glycan-directed antibodies from various laboratories provides a large and diverse set of probes for studies of plant cell wall structure, function, dynamics, and biosynthesis.Cell walls play important roles in the structure, physiology, growth, and development of plants (Carpita and Gibeaut, 1993). Plant cell wall materials are also important sources of human and animal nutrition, natural textile fibers, paper and wood products, and raw materials for biofuel production (Somerville, 2007). Many genes thought to be responsible for plant wall biosynthesis and modification have been identified (Burton et al., 2005; Lerouxel et al., 2006; Mohnen et al., 2008), and 15% of the Arabidopsis (Arabidopsis thaliana) genome is likely devoted to these functions (Carpita et al., 2001). However, phenotypic analysis in plants carrying cell wall-related mutations has proven particularly difficult. First, cell wall-related genes are often expressed differentially and at low levels between cells of different tissues (Sarria et al., 2001). Also, plants have compensatory mechanisms to maintain wall function in the absence of a particular gene (Somerville et al., 2004). Thus, novel tools and approaches are needed to characterize wall structures and the genes responsible for their synthesis and modification.Monoclonal antibodies (mAbs) developed against cell wall polymers have emerged as an important tool for the study of plant cell wall structure and function (Knox, 2008). Previous studies have utilized mAbs that bind epitopes present on rhamnogalacturonan I (RG-I; Freshour et al., 1996; Jones et al., 1997; Willats et al., 1998; McCartney et al., 2000; Clausen et al., 2004; Altaner et al., 2007), homogalacturonan (Willats et al., 2001; Clausen et al., 2003), xylogalacturonan (Willats et al., 2004), xylans and arabinoxylans (McCartney et al., 2005), xyloglucan (Freshour et al., 1996, 2003; Marcus et al., 2008), arabinogalactan(protein) (Pennell et al., 1991; Puhlmann et al., 1994; Dolan et al., 1995; Smallwood et al., 1996), and extensins (Smallwood et al., 1995) to localize these epitopes in plant cells and tissues. In addition, mAbs have been used to characterize plants carrying mutations in genes thought to be associated with cell wall biosynthesis and metabolism (Orfila et al., 2001; Seifert, 2004; Persson et al., 2007; Cavalier et al., 2008; Zabotina et al., 2008). Despite their utility, the available set of mAbs against carbohydrate structures is relatively small given the structural complexity of wall polymers (Ridley et al., 2001; O''Neill and York, 2003), and knowledge of their epitope specificity is limited. Thus, additional mAbs specific to diverse epitope structures and methods for rapid epitope characterization are needed (Somerville et al., 2004).Here, we report the generation of 130 new mAbs that bind to diverse epitopes present on a broad spectrum of plant cell wall glycans. In addition, approximately 50 previously reported or generated mAbs were included in the ELISA-based screens used to group the antibodies according to their binding patterns against a diverse panel of 54 polysaccharides. The resulting ELISA data were analyzed by hierarchical clustering to illustrate the relationships between the available mAbs. Nineteen groups of mAbs were identified from the clustering analysis. Some initial information regarding possible epitopes recognized by some of these antibodies could be inferred from the clustering analysis.     

Focus Issue on Plant Cell Walls: Sequencing around 5-Hydroxyconiferyl Alcohol-Derived Units in Caffeic Acid O-Methyltransferase-Deficient Poplar Lignins

Caffeic acid O-methyltransferase (COMT) is a bifunctional enzyme that methylates the 5- and 3-hydroxyl positions on the aromatic ring of monolignol precursors, with a preference for 5-hydroxyconiferaldehyde, on the way to producing sinapyl alcohol. Lignins in COMT-deficient plants contain benzodioxane substructures due to the incorporation of 5-hydroxyconiferyl alcohol (5-OH-CA), as a monomer, into the lignin polymer. The derivatization followed by reductive cleavage method can be used to detect and determine benzodioxane structures because of their total survival under this degradation method. Moreover, partial sequencing information for 5-OH-CA incorporation into lignin can be derived from detection or isolation and structural analysis of the resulting benzodioxane products. Results from a modified derivatization followed by reductive cleavage analysis of COMT-deficient lignins provide evidence that 5-OH-CA cross couples (at its β-position) with syringyl and guaiacyl units (at their O-4-positions) in the growing lignin polymer and then either coniferyl or sinapyl alcohol, or another 5-hydroxyconiferyl monomer, adds to the resulting 5-hydroxyguaiacyl terminus, producing the benzodioxane. This new terminus may also become etherified by coupling with further monolignols, incorporating the 5-OH-CA integrally into the lignin structure.Lignins are polymeric aromatic constituents of plant cell walls, constituting about 15% to 35% of the dry mass (Freudenberg and Neish, 1968; Adler, 1977). Unlike other natural polymers such as cellulose or proteins, which have labile linkages (glycosides and peptides) between their building units, lignins’ building units are combinatorially linked with strong ether and carbon-carbon bonds (Sarkanen and Ludwig, 1971; Harkin, 1973). It is difficult to completely degrade lignins. Lignins are traditionally considered to be dehydrogenative polymers derived from three monolignols, p-coumaryl alcohol 1h (which is typically minor), coniferyl alcohol 1g, and sinapyl alcohol 1s (Fig. 1; Sarkanen, 1971). They can vary greatly in their composition in terms of their plant and tissue origins (Campbell and Sederoff, 1996). This variability is probably determined and regulated by different activities and substrate specificities of the monolignol biosynthetic enzymes from different sources, and by the carefully controlled supply of monomers to the lignifying zone (Sederoff and Chang, 1991).Open in a separate windowFigure 1.The monolignols 1, and marker compounds 2 to 4 resulting from incorporation of novel monomer 15h into lignins: thioacidolysis monomeric marker 2, dimers 3, and DFRC dimeric markers 4.Recently there has been considerable interest in genetic modification of lignins with the goal of improving the utilization of lignocellulosics in various agricultural and industrial processes (Baucher et al., 2003; Boerjan et al., 2003a, 2003b). Studies on mutant and transgenic plants with altered monolignol biosynthesis have suggested that plants have a high level of metabolic plasticity in the formation of their lignins (Sederoff et al., 1999; Ralph et al., 2004). Lignins in angiosperm plants with depressed caffeic acid O-methyltransferase (COMT) were found to derive from significant amounts of 5-hydroxyconiferyl alcohol (5-OH-CA) monomers 15h (Fig. 1) substituting for the traditional monomer, sinapyl alcohol 1s (Marita et al., 2001; Ralph et al., 2001a, 2001b; Jouanin et al., 2004; Morreel et al., 2004b). NMR analysis of a ligqnin from COMT-deficient poplar (Populus spp.) has revealed that novel benzodioxane structures are formed through β-O-4 coupling of a monolignol with 5-hydroxyguaiacyl units (resulting from coupling of 5-OH-CA), followed by internal trapping of the resultant quinone methide by the phenolic 5-hydroxyl (Ralph et al., 2001a). When the lignin was subjected to thioacidolysis, a novel 5-hydroxyguaiacyl monomer 2 (Fig. 1) was found in addition to the normal guaiacyl and syringyl thioacidolysis monomers (Jouanin et al., 2000). Also, a new compound 3g (Fig. 1) was found in the dimeric products from thioacidolysis followed by Raney nickel desulfurization (Lapierre et al., 2001; Goujon et al., 2003).Further study with the lignin using the derivatization followed by reductive cleavage (DFRC) method also confirmed the existence of benzodioxane structures, with compounds 4 (Fig. 1) being identified following synthesis of the authentic parent compounds 9 (Fig. 2). However, no 5-hydroxyguaiacyl monomer could be detected in the DFRC products. These facts imply that the DFRC method leaves the benzodioxane structures fully intact, suggesting that the method might therefore be useful as an analytical tool for determining benzodioxane structures that are linked by β-O-4 ethers. Using a modified DFRC procedure, we report here on results that provide further evidence for the existence of benzodioxane structures in lignins from COMT-deficient plants, that 5-OH-CA is behaving as a rather ideal monolignol that can be integrated into plant lignins, and demonstrate the usefulness of the DFRC method for determining these benzodioxane structures.Open in a separate windowFigure 2.Synthesis of benzodioxane DFRC products 12 (see later in Fig. 6 for their structures). i, NaH, THF. ii, Pyrrolidine. iii, 1g or 1s, benzene/acetone (4/1, v/v). iv, DIBAL-H, toluene. v, Iodomethane-K₂CO₃, acetone. vi, Ac₂O pyridine.     

Activation of β-Glucan Synthases by Wall-Bound Purple Acid Phosphatase in Tobacco Cells

Wall-bound purple acid phosphatases have been shown to be potentially involved in the regulation of plant cell growth. The aim of this work was to further investigate the function of one of these phosphatases in tobacco (Nicotiana tabacum), NtPAP12, using transgenic cells overexpressing the enzyme. The transgenic cells exhibited a higher level of phosphatase activity in their walls. The corresponding protoplasts regenerating a cell wall exhibited a higher rate of β-glucan synthesis and cellulose deposition was increased in the walls of the transgenic cells. A higher level of plasma membrane glucan synthase activities was also measured in detergent extracts of membrane fractions from the transgenic line, while no activation of Golgi-bound glycan synthases was detected. Enzymatic hydrolysis and methylation analysis were performed on the products synthesized in vitro by the plasma membrane enzymes from the wild-type and transgenic lines extracted with digitonin and incubated with radioactive UDP-glucose. The data showed that the glucans consisted of callose and cellulose and that the amount of each glucan synthesized by the enzyme preparation from the transgenic cells was significantly higher than in the case of the wild-type cells. The demonstration that callose and cellulose synthases are activated in cells overexpressing the wall-bound phosphatase NtPAP12 suggests a regulation of these carbohydrate synthases by a phosphorylation/dephosphorylation process, as well as a role of wall-bound phosphatases in the regulation of cell wall biosynthesis.     

Dephosphorylation of Barrier-to-autointegration Factor by Protein Phosphatase 4 and Its Role in Cell Mitosis

Barrier-to-autointegration factor (BAF or BANF1) is highly conserved in multicellular eukaryotes and was first identified for its role in retroviral DNA integration. Homozygous BAF mutants are lethal and depletion of BAF results in defects in chromatin segregation during mitosis and subsequent nuclear envelope assembly. BAF exists both in phosphorylated and unphosphorylated forms with phosphorylation sites Thr-2, Thr-3, and Ser-4, near the N terminus. Vaccinia-related kinase 1 is the major kinase responsible for phosphorylation of BAF. We have identified the major phosphatase responsible for dephosphorylation of Ser-4 to be protein phosphatase 4 catalytic subunit. By examining the cellular distribution of phosphorylated BAF (pBAF) and total BAF (tBAF) through the cell cycle, we found that pBAF is associated with the core region of telophase chromosomes. Depletion of BAF or perturbing its phosphorylation state results not only in nuclear envelope defects, including mislocalization of LEM domain proteins and extensive invaginations into the nuclear interior, but also impaired cell cycle progression. This phenotype is strikingly similar to that seen in cells from patients with progeroid syndrome resulting from a point mutation in BAF.     

Focus Issue on Plant Cell Walls: A Bioinformatics Approach to the Identification,Classification, and Analysis of Hydroxyproline-Rich Glycoproteins

Hydroxyproline-rich glycoproteins (HRGPs) are a superfamily of plant cell wall proteins that function in diverse aspects of plant growth and development. This superfamily consists of three members: hyperglycosylated arabinogalactan proteins (AGPs), moderately glycosylated extensins (EXTs), and lightly glycosylated proline-rich proteins (PRPs). Hybrid and chimeric versions of HRGP molecules also exist. In order to “mine” genomic databases for HRGPs and to facilitate and guide research in the field, the BIO OHIO software program was developed that identifies and classifies AGPs, EXTs, PRPs, hybrid HRGPs, and chimeric HRGPs from proteins predicted from DNA sequence data. This bioinformatics program is based on searching for biased amino acid compositions and for particular protein motifs associated with known HRGPs. HRGPs identified by the program are subsequently analyzed to elucidate the following: (1) repeating amino acid sequences, (2) signal peptide and glycosylphosphatidylinositol lipid anchor addition sequences, (3) similar HRGPs via Basic Local Alignment Search Tool, (4) expression patterns of their genes, (5) other HRGPs, glycosyl transferase, prolyl 4-hydroxylase, and peroxidase genes coexpressed with their genes, and (6) gene structure and whether genetic mutants exist in their genes. The program was used to identify and classify 166 HRGPs from Arabidopsis (Arabidopsis thaliana) as follows: 85 AGPs (including classical AGPs, lysine-rich AGPs, arabinogalactan peptides, fasciclin-like AGPs, plastocyanin AGPs, and other chimeric AGPs), 59 EXTs (including SP₅ EXTs, SP₅/SP₄ EXTs, SP₄ EXTs, SP₄/SP₃ EXTs, a SP₃ EXT, “short” EXTs, leucine-rich repeat-EXTs, proline-rich extensin-like receptor kinases, and other chimeric EXTs), 18 PRPs (including PRPs and chimeric PRPs), and AGP/EXT hybrid HRGPs.The genomics era has produced vast amounts of biological data that await examination. In order to “mine” such data effectively, a bioinformatics approach can be utilized to identify genes of interest, subject them to various in silico analyses, and extract relevant biological information on them from various public databases. Examination of such data produces novel insights with respect to the genes in question and can be used to facilitate and guide further research in the field. Such is the case here, where bioinformatics tools were developed to identify, classify, and analyze members of the Hyp-rich glycoprotein (HRGP) superfamily encoded by the Arabidopsis (Arabidopsis thaliana) genome.HRGPs are a superfamily of plant cell wall proteins that are subdivided into three families, arabinogalactan proteins (AGPs), extensins (EXTs), and Pro-rich proteins (PRPs), and extensively reviewed (Showalter, 1993; Kieliszewski and Lamport, 1994; Nothnagel, 1997; Cassab, 1998; José-Estanyol and Puigdomènech, 2000; Seifert and Roberts, 2007). However, it has become increasingly clear that the HRGP superfamily is perhaps better represented as a spectrum of molecules ranging from the highly glycosylated AGPs to the moderately glycosylated EXTs and finally to the lightly glycosylated PRPs. Moreover, hybrid HRGPs, composed of HRGP modules from different families, and chimeric HRGPs, composed of one or more HRGP modules within a non-HRGP protein, also can be considered part of the HRGP superfamily. Given that many HRGPs are composed of repetitive protein sequences, particularly the EXTs and PRPs, and many have low sequence similarity to one another, particularly the AGPs, BLAST searches typically identify only a few closely related family members and do not represent a particularly effective means to identify members of the HRGP superfamily in a comprehensive manner.Building upon the work of Schultz et al. (2002) that focused on the AGP family, a new bioinformatics software program, BIO OHIO, developed at Ohio University, makes it possible to search all 28,952 proteins encoded by the Arabidopsis genome and identify putative HRGP genes. Two distinct types of searches are possible with this program. First, the program can search for biased amino acid compositions in the genome-encoded protein sequences. For example, classical AGPs can be identified by their biased amino acid compositions of greater then 50% Pro (P), Ala (A), Ser (S), and Thr (T), as indicated by greater than 50% PAST. Similarly, arabinogalactan peptides (AG peptides) are identified by biased amino acid compositions of greater then 35% PAST, but the protein (i.e. peptide) must also be between 50 and 90 amino acids in length. Likewise, PRPs can be identified by a biased amino acid composition of greater then 45% PVKCYT. Second, the program can search for specific amino acid motifs that are commonly found in known HRGPs. For example, SP₄ pentapeptide and SP₃ tetrapeptide motifs are associated with EXTs, a fasciclin H1 motif is found in fasciclin-like AGPs (FLAs), and PPVX(K/T) (where X is any amino acid) and KKPCPP motifs are found in several known PRPs (Fowler et al., 1999). In addition to searching for HRGPs, the program can analyze proteins identified by a search. For example, the program checks for potential signal peptide sequences and glycosylphosphatidylinositol (GPI) plasma member anchor addition sequences, both of which are associated with HRGPs (Showalter, 1993, 2001; Youl et al., 1998; Sherrier et al., 1999; Svetek et al., 1999). Moreover, the program can identify repeated amino acid sequences within the sequence and has the ability to search for bias amino acid compositions within a sliding window of user-defined size, making it possible to identify HRGP domains within a protein sequence.Here, we report on the use of this bioinformatics program in identifying, classifying, and analyzing members of the HRGP superfamily (i.e. AGPs, EXTs, PRPs, hybrid HRGPs, and chimeric HRGPs) in the genetic model plant Arabidopsis. An overview of this bioinformatics approach is presented in Figure 1. In addition, public databases and programs were accessed and utilized to extract relevant biological information on these HRGPs in terms of their expression patterns, most similar sequences via BLAST analysis, available genetic mutants, and coexpressed HRGP, glycosyl transferase (GT), prolyl 4-hydroxylase (P4H), and peroxidase genes in Arabidopsis. This information provides new insight to the HRGP superfamily and can be used by researchers to facilitate and guide further research in the field. Moreover, the bioinformatics tools developed here can be readily applied to protein sequences from other species to analyze their HRGPs or, for that matter, any given protein family by altering the input parameters.Open in a separate windowFigure 1.Bioinformatics workflow diagram summarizing the identification, classification, and analysis of HRGPs (AGPs, EXTs, and PRPs) in Arabidopsis. Classical AGPs were defined as containing greater than 50% PAST coupled with the presence of AP, PA, SP, and TP repeats distributed throughout the protein, Lys-rich AGPs were a subgroup of classical AGPs that included a Lys-rich domain, and chimeric AGPs were defined as containing greater than 50% PAST coupled with the localized distribution of AP, PA, SP, and TP repeats. AG peptides were defined to be 50 to 90 amino acids in length and containing greater than 35% PAST coupled with the presence of AP, PA, SP, and TP repeats distributed throughout the peptide. FLAs were defined as having a fasciclin domain coupled with the localized distribution of AP, PA, SP, and TP repeats. Extensins were defined as containing two or more SP₃ or SP₄ repeats coupled with the distribution of such repeats throughout the protein; chimeric extensins were similarly identified but were distinguished from the extensins by the localized distribution of such repeats in the protein; and short extensins were defined to be less than 200 amino acids in length coupled with the extensin definition. PRPs were identified as containing greater than 45% PVKCYT or two or more KKPCPP or PVX(K/T) repeats coupled with the distribution of such repeats and/or PPV throughout the protein. Chimeric PRPs were similarly identified but were distinguished from PRPs by the localized distribution of such repeats in the protein. Hybrid HRGPs (i.e. AGP/EXT hybrids) were defined as containing two or more repeat units used to identify AGPs, extensins, or PRPs. The presence of a signal peptide was used to provide added support for the identification of an HRGP but was not used in an absolute fashion. Similarly, the presence of a GPI anchor addition sequence was used to provide added support for the identification of classical AGPs and AG peptides, which are known to contain such sequences. BLAST searches were also used to provide some support to our classification if the query sequence showed similarity to other members of an HRGP subfamily. Note that some AGPs, particularly chimeric AGPs, and PRPs were identified from an Arabidopsis database annotation search and that two chimeric extensins were identified from the primary literature as noted in the text.     

Celebrating Plant Cells： A Special Issue on Plant Cell Biology

A special issue on plant cell biology is long overdue for JIPB! In the last two decades or so, the plant biology community has been thrilled by explosive discoveries regarding the molecular and genetic basis of plant growth, development, and responses to the environment, largely owing to recent maturation of model systems like Arabidopsis thaliana and the rice Oryza sativa, as well as the rapid development of high throughput technologies associated with qenomics and proteomics.     

Plant Cell Wall Proteins: Partial Characterization of Maize Wall Proteins With Putative Roles in Auxin-Induced Growth

Antibodies raised against cell wall proteins inhibited auxin-inducedgrowth of Zea mays L. coleoptile segments. The total complementof proteins isolated from the cell walls of Zea mays seedlingswas fractionated by cation exchange and gel filtration chromatography.A procedure was developed to evaluate these cell wall-proteinfractions for their ability to reverse growth inhibition causeby specific antibody binding. Inhibition of growth was attributedto specific antibody-antigen interaction based on the observationsthat only serum containing antibodies against certain cell wallproteins inhibited growth, that gamma globulins purified fromappropriate serum samples inhibited growth, and that a specificsubfraction of isolated cell wall proteins precipitate the growthinhibiting antibody. Antigens which generated growth inhibitoryantibodies were identified as an acidic group of proteins withapparent relative molecular masses in the range of 20–25kDa. This subfraction of cell wall proteins was not effectivein hydrolyzing cell wall polysaccharides. A small amount ofcarbohydrate was found associated with this fraction and mayreflect some degree of glycosylation of some of the proteins ¹Supported in part by National Science Foundation Research GrantPCM 7818588 ²Present Address: USDA-ARS, U.S. Dairy Forage Research Center,University of Wisconsin, Madison, WI 53706 ³Present Address: Department of Vegetable Crops, Universityof California, Davis, CA 95616 (Received November 2, 1987; Accepted March 31, 1988)     

Changes in Cell Wall Properties Coincide with Overexpression of Extensin Fusion Proteins in Suspension Cultured Tobacco Cells

Extensins are one subfamily of the cell wall hydroxyproline-rich glycoproteins, containing characteristic SerHyp₄ glycosylation motifs and intermolecular cross-linking motifs such as the TyrXaaTyr sequence. Extensins are believed to form a cross-linked network in the plant cell wall through the tyrosine-derivatives isodityrosine, pulcherosine, and di-isodityrosine. Overexpression of three synthetic genes encoding different elastin-arabinogalactan protein-extensin hybrids in tobacco suspension cultured cells yielded novel cross-linking glycoproteins that shared features of the extensins, arabinogalactan proteins and elastin. The cell wall properties of the three transgenic cell lines were all changed, but in different ways. One transgenic cell line showed decreased cellulose crystallinity and increased wall xyloglucan content; the second transgenic cell line contained dramatically increased hydration capacity and notably increased cell wall biomass, increased di-isodityrosine, and increased protein content; the third transgenic cell line displayed wall phenotypes similar to wild type cells, except changed xyloglucan epitope extractability. These data indicate that overexpression of modified extensins may be a route to engineer plants for bioenergy and biomaterial production.     

Focus Issue on Plant Cell Walls: The Arabidopsis Family GT43 Glycosyltransferases Form Two Functionally Nonredundant Groups Essential for the Elongation of Glucuronoxylan Backbone

There exist four members of family GT43 glycosyltransferases in the Arabidopsis (Arabidopsis thaliana) genome, and mutations of two of them, IRX9 and IRX14, have previously been shown to cause a defect in glucuronoxylan (GX) biosynthesis. However, it is currently unknown whether IRX9 and IRX14 perform the same biochemical function and whether the other two GT43 members are also involved in GX biosynthesis. In this report, we performed comprehensive genetic analysis of the functional roles of the four Arabidopsis GT43 members in GX biosynthesis. The I9H (IRX9 homolog) and I14H (IRX14 homolog) genes were shown to be specifically expressed in cells undergoing secondary wall thickening, and their encoded proteins were targeted to the Golgi, where GX is synthesized. Overexpression of I9H but not IRX14 or I14H rescued the GX defects conferred by the irx9 mutation, whereas overexpression of I14H but not IRX9 or I9H complemented the GX defects caused by the irx14 mutation. Double mutant analyses revealed that I9H functioned redundantly with IRX9 and that I14H was redundant with IRX14 in their functions. In addition, double mutations of IRX9 and IRX14 were shown to cause a loss of secondary wall thickening in fibers and a much more severe reduction in GX amount than their single mutants. Together, these results provide genetic evidence demonstrating that all four Arabidopsis GT43 members are involved in GX biosynthesis and suggest that they form two functionally nonredundant groups essential for the normal elongation of GX backbone.Secondary walls constitute the bulk of cellulosic biomass produced by vascular plants. Cellulosic biomass in the form of fibers and wood is an important raw material for a myriad of industrial uses, such as timber, pulping, papermaking, and textiles. Due to the dwindling of nonrenewable fossil fuels and the detrimental effects of burning fossil fuels on the global environment, there has been an urgent call to develop alternative renewable energy sources, and the lignocellulosic biomass from plants is considered to be an attractive renewable source for biofuel production (Somerville, 2006). However, lignocellulosic biomass is recalcitrant to the enzymatic conversion of cellulose into sugars, because cellulose is embedded in a complex mixture of polysaccharides and lignin polymers that block the accessibility of degrading enzymes. It has been shown that reduction of lignin and xylan by chemical or enzymatic treatment or by the transgenic approach reduces the recalcitrance of the lignocellulosic biomass to saccharification (Chen and Dixon, 2007; Himmel et al., 2007; Lee et al., 2009a). Therefore, a complete understanding of how individual components of lignocellulosic biomass are biosynthesized will potentially allow us to design novel strategies for genetic modification of cell wall composition and, hence, reduction in biomass recalcitrance to biofuel production.Xylan is the main hemicellulose that cross-links with cellulose in the secondary walls of dicot plants (Carpita and McCann, 2000). It is made of a linear backbone of β-(1,4)-linked xylosyl residues, about 10% of which are attached with side chains of single residues of glucuronic acid (GlcA) and/or 4-O-methylglucuronic acid (MeGlcA) via α-(1,2)-linkages. The backbone xylosyl residues may also be substituted with the arabinosyl group and acetylated. Based on the nature of the side chains, xylan is generally grouped as (methyl)glucuronoxylan (GX), which is the main hemicellulose in dicots, and arabinoxylan and glucuronoarabinoxylan, which are the most abundant hemicelluloses in grass cell walls (Ebringerová and Heinze, 2000). In addition to the xylosyl backbone, the reducing end of xylan from birch (Betula verrucosa), spruce (Picea abies), Arabidopsis (Arabidopsis thaliana), and poplar (Populus alba × Populus tremula) contains a unique tetrasaccharide sequence β-d-Xylp-(1→3)-α-l-Rhap-(1→2)-α-d-GalpA-(1→4)-d-Xylp (Shimizu et al., 1976; Johansson and Samuelson, 1977; Andersson et al., 1983; Peña et al., 2007; Lee et al., 2009a).The biosynthesis of xylan requires multiple glycosyltransferases and other modifying enzymes. Early biochemical studies revealed the activities of xylosyltransferases, glucuronosyltransferases, arabinosyltransferases, methyltransferases, and acetyltransferases that are likely involved in the biosynthesis of xylan (Baydoun et al., 1983, 1989; Kuroyama and Tsumuraya, 2001; Gregory et al., 2002; Porchia et al., 2002; Urahara et al., 2004; Zeng et al., 2008). However, none of the genes corresponding to these xylan biosynthetic enzymes have been identified. Recent molecular and genetic studies in Arabidopsis and poplar have led to the identification of a number of glycosyltransferases that are essential for GX biosynthesis. Among them, several members of the families GT47 and GT8 from Arabidopsis (FRA8, F8H, IRX8, and PARVUS) and poplar (GT47C, GT8D, and GT8E/8F) are implicated in the biosynthesis of the GX reducing end sequence (Aspeborg et al., 2005; Brown et al., 2005, 2007; Zhong et al., 2005; Zhou et al., 2006, 2007; Lee et al., 2007b, 2009b, 2009c; Peña et al., 2007; Persson et al., 2007). These glycosyltransferase genes are specifically expressed in vessels and fibers, and their encoded proteins are targeted to Golgi, where GX is synthesized, except for PARVUS and GT8E/8F, which are predominantly located in the endoplasmic reticulum (Lee et al., 2007b, 2009c). Mutations of the Arabidopsis FRA8, IRX8, and PARVUS genes all led to a near loss of the reducing end tetrasaccharide sequence and a reduction in GX amount (Brown et al., 2007; Lee et al., 2007b; Peña et al., 2007), indicating their essential roles in the biosynthesis of the GX reducing end sequence, although their exact enzymatic activities are still unknown.The genetic studies have also identified roles of two members of family GT43 glycosyltransferases, IRX9 and IRX14, from Arabidopsis and GT43B from poplar in the biosynthesis of the GX xylosyl backbone (Brown et al., 2007; Peña et al., 2007; Zhou et al., 2007). The expression of IRX9 has been shown to be associated with cells undergoing secondary wall biosynthesis, and its encoded protein is targeted to the Golgi. Mutation of the IRX9 gene causes a drastic reduction in xylan xylosyltransferase activity (Brown et al., 2007; Lee et al., 2007a) and concomitantly a substantial decrease in the GX chain length and GX amount (Peña et al., 2007). Mutation of IRX14 was shown to result in a reduction in the GX level and the xylosyltransferase activity (Brown et al., 2007). In addition, two functionally redundant glycosyltransferases, IRX10 and IRX10-like, which belong to family GT47, were also demonstrated to be required for the normal GX level and xylan xylosyltransferase activity, suggesting their involvement in the biosynthesis of the GX xylosyl backbone (Brown et al., 2009; Wu et al., 2009).In this report, we performed comprehensive molecular and genetic studies of the roles of all members of the Arabidopsis family GT43 glycosyltransferases in GX biosynthesis. We show that, like IRX9, the other three GT43 members, I9H (IRX9 homolog), IRX14, and I14H (IRX14 homolog), are expressed in secondary wall-containing cells and that their encoded proteins are targeted to the Golgi. We have found that the GX defects in the irx9 mutant can be rescued by overexpression of I9H but not IRX14 and I14H. Similarly, overexpression of I14H but not IRX9 and I9H is able to complement the GX defects caused by the irx14 mutation. Furthermore, genetic analysis of an array of double mutants revealed redundant and nonredundant roles of GT43 members in GX biosynthesis. Our findings demonstrate that the Arabidopsis family GT43 glycosyltransferases form two functionally nonredundant groups essential for the normal elongation of GX backbone.     

Structure of Plant Cell Walls : XIX. Isolation and Characterization of Wall Polysaccharides from Suspension-Cultured Douglas Fir Cells

The partial purification and characterization of cell wall polysaccharides isolated from suspension-cultured Douglas fir (Pseudotsuga menziesii) cells are described. Extraction of isolated cell walls with 1.0 m LiCl solubilized pectic polysaccharides with glycosyl-linkage compositions similar to those of rhamnogalacturonans I and II, pectic polysaccharides isolated from walls of suspension-cultured sycamore cells. Treatment of LiCl-extracted Douglas fir walls with an endo-α-1,4-polygalacturonase released only small, additional amounts of pectic polysaccharide, which had a glycosyl-linkage composition similar to that of rhamnogalacturonan I. Xyloglucan oligosaccharides were released from the endo-α-1,4-polygalacturonase-treated walls by treatment with an endo-β-1,4-glucanase. These oligosaccharides included hepta- and nonasaccharides similar or identical to those released from sycamore cell walls by the same enzyme, and structurally related octa- and decasaccharides similar to those isolated from various angiosperms. Finally, additional xyloglucan and small amounts of xylan were extracted from the endo-β-1,4-glucanase-treated walls by 0.5 n NaOH. The xylan resembled that extracted by NaOH from dicot cell walls in that it contained 2,4- but not 3,4-linked xylosyl residues. In this study, a total of 15% of the cell wall was isolated as pectic material, 10% as xyloglucan, and less than 1% as xylan. The noncellulosic polysaccharides accounted for 26% of the cell walls, cellulose for 23%, protein for 34%, and ash for 5%, for a total of 88% of the cell wall. The cell walls of Douglas fir were more similar to dicot (sycamore) cell walls than to those of graminaceous monocots, because they had a predominance of xyloglucan over xylan as the principle hemicellulose and because they possessed relatively large amounts of rhamnogalacturonan-like pectic polysaccharides.