Understanding the ecological drivers of avian influenza virus infection in wildfowl: a continental-scale study across Africa

Despite considerable effort for surveillance of wild birds for avian influenza viruses (AIVs), empirical investigations of ecological drivers of AIV prevalence in wild birds are still scarce. Here we used a continental-scale dataset, collected in tropical wetlands of 15 African countries, to test the relative roles of a range of ecological factors on patterns of AIV prevalence in wildfowl. Seasonal and geographical variations in prevalence were positively related to the local density of the wildfowl community and to the wintering period of Eurasian migratory birds in Africa. The predominant influence of wildfowl density with no influence of climatic conditions suggests, in contrast to temperate regions, a predominant role for inter-individual transmission rather than transmission via long-lived virus persisting in the environment. Higher prevalences were found in Anas species than in non-Anas species even when we account for differences in their foraging behaviour (primarily dabbling or not) or their geographical origin (Eurasian or Afro-tropical), suggesting the existence of intrinsic differences between wildfowl taxonomic groups in receptivity to infection. Birds were found infected as often in oropharyngeal as in cloacal samples, but rarely for both types of sample concurrently, indicating that both respiratory and digestive tracts may be important for AIV replication.     

Comparative proteome analysis of tracheal tissues in response to infectious bronchitis coronavirus,Newcastle disease virus,and avian influenza virus H9 subtype virus infection

Infectious bronchitis coronavirus (IBV), Newcastle disease virus (NDV), and avian influenza virus (AIV) H9 subtype are major pathogens of chickens causing serious respiratory tract disease and heavy economic losses. To better understand the replication features of these viruses in their target organs and molecular pathogenesis of these different viruses, comparative proteomic analysis was performed to investigate the proteome changes of primary target organ during IBV, NDV, and AIV H9 infections, using 2D‐DIGE followed MALDI‐TOF/TOF‐MS. In total, 44, 39, 41, 48, and 38 proteins were identified in the tracheal tissues of the chickens inoculated with IBV (ck/CH/LDL/97I, H120), NDV (La Sota), and AIV H9, and between ck/CH/LDL/97I and H120, respectively. Bioinformatics analysis showed that IBV, NDV, and AIV H9 induced similar core host responses involved in biosynthetic, catabolic, metabolic, signal transduction, transport, cytoskeleton organization, macromolecular complex assembly, cell death, response to stress, and immune system process. Comparative analysis of host response induced by different viruses indicated differences in protein expression changes induced by IBV, NDV, and AIV H9 may be responsible for the specific pathogenesis of these different viruses. Our result reveals specific host response to IBV, NDV, and AIVH9 infections and provides insights into the distinct pathogenic mechanisms of these avian respiratory viruses.     

DC-SIGN mediates avian H5N1 influenza virus infection in cis and in trans

DC-SIGN, a C-type lectin receptor expressed in dendritic cells (DCs), has been identified as a receptor for human immunodeficiency virus type 1, hepatitis C virus, Ebola virus, cytomegalovirus, dengue virus, and the SARS coronavirus. We used H5N1 pseudotyped and reverse-genetics (RG) virus particles to study their ability to bind with DC-SIGN. Electronic microscopy and functional assay results indicate that pseudotyped viruses containing both HA and NA proteins express hemagglutination and are capable of infecting cells expressing α-2,3-linked sialic acid receptors. Results from a capture assay show that DC-SIGN-expressing cells (including B-THP-1/DC-SIGN and T-THP-1/DC-SIGN) and peripheral blood dendritic cells are capable of transferring H5N1 pseudotyped and RG virus particles to target cells; this action can be blocked by anti-DC-SIGN monoclonal antibodies. In summary, (a) DC-SIGN acts as a capture or attachment molecule for avian H5N1 virus, and (b) DC-SIGN mediates infections in cis and in trans.     

三江自然保护区野生迁徙水禽携带禽流感病毒和新城疫病毒状况的监测

[目的]为了对途经三江保护区的野生迁徙水禽携带禽流感病毒(AIV)和新城疫病毒(NDV)的状况进行有效监测.[方法]在2005年10月、2006年4月、2006年10月3个候鸟的迁徙季节从三江保护区采集了158只野鸟的咽拭子和肛拭子样本.应用SPF鸡胚盲传、血凝和血凝抑制试验和RT-PCR等方法进行了病毒的分离和鉴定.[结果]结果共分离到20株AIV和13株NDV.20株AIV均来自2006年10月采集的样品,经常规血清学分型鉴定分为12个亚型,11个亚型来源于绿头鸭,分别为H2N2(2/20),H2N6(2/20),H3N4(1/20),H3N6(2/20),H3N7(2/20),H3N8(2/20),H6N2(2/20),H11N2(1/20),H11N3(1/20),H11N5(2/20),H11N6(1/20),另外一株来源于白眉鸭,为H5N2(1/20).13株NDV则来自3个迁徙季节的5种不同水禽采,其中包括绿头鸭(8/13),豆雁(1/13),白额雁(1/13),绿翅鸭(1/13)和鸳鸯(2/13).[结论]这一结果表明,拥有极大种群数量、在世界范围内广泛分布的绿头鸭,被认为可能是AIV和NDV最重要的自然宿主之一,并在病毒的传播上比其他野生鸟类具有更为重要的生态学意义.     

人感染新型H10N3禽流感病毒分子溯源

【背景】1997年香港发生人感染禽流感事件以来,禽流感病毒成为持续威胁人类健康和公共卫生的重要病原体。【目的】对一例人感染新型H10N3禽流感病毒病例开展分子溯源研究。【方法】流感病毒分型检测采用RT-qPCR法,在下一代测序平台上完成病毒基因组测序,序列和系统进化分析采用BLAST和MEGA 6.1等生物信息学软件。【结果】2021年4月从严重呼吸道疾病患者体内分离到一株病毒,经核酸检测和序列分析,结果表明其为H10N3亚型禽流感病毒。从患者居所附近的农贸市场分离到一株基因高度同源的H10N3亚型禽流感病毒。分离株是一种新的基因重配H10N3禽流感病毒,其血凝素hemagglutinin(HA)和神经氨酸酶neuraminidase(NA)组合最早在2019年华东地区的家禽中检测到,6个内部基因来源于近年来中国南方家禽中流行的H9N2病毒。病毒的HA蛋白的裂解位点含有1个碱性氨基酸R,未插入多个碱性氨基酸,理论上不属于高致病性禽流感病毒。HA蛋白受体结合位点228位氨基酸残基由G突变为S,理论上增强了对人SAα2,6受体的亲和力。另外,未发现PB2蛋白E627K突变,但591位氨基酸...     

不同免疫状态的小鼠对禽流感病毒H5N1感染的敏感性及其机制探讨

目的 比较不同免疫状态的小鼠对禽流感病毒的易感性,并探讨可能的原因.方法 四种免疫状态的小鼠,无菌BALB/c小鼠,SPF级BALB/c小鼠,SCID小鼠和nude小鼠,以10TCID50的禽流感病毒50μL感染小鼠,观察小鼠的体重变化,存活率,各组织脏器的病毒分布,肺组织的细胞因子变化和肺组织病理病变.结果 四种小鼠均能感染禽流感病毒,其中,无菌小鼠对禽流感病毒H5N1的易感性最低,存活率最高.并且病毒在无菌鼠体内病毒的复制水平最低,细胞因子TNF-α,IL-12,MIP2,GATA3,IFN-a/β在感染后表达水平最低,其中第7天最低.结论 无菌小鼠能感染禽流感病毒,但是相比较SPF级BALB/c小鼠,SCID小鼠和nude小鼠,其易感性最低,可能与病毒在组织内的低复制和细胞因子的低表达均有关.     

儿童乙型流感病毒感染特点及防治的研究进展

乙型流感病毒是引起流行性感冒（简称流感）发生和流行的主要病原体之一,近年来流感高发的季节感染率呈上升趋势,儿童是乙型流感病毒感染的易感、高危群体。乙型流感病毒虽然抗原变异性较弱,但仍可引起暴发流行,严重威胁患儿的健康,因此对于儿童乙型流感病毒感染的防治至关重要。本文综合近年来国内外相关文献,从流行病学特征、临床表现、实验室检查、乙型流感病毒感染的药物治疗、免疫疗法等角度出发对乙型流感病毒感染特点及治疗进展予以综述,对乙型流感病毒进行长期有效的监测,了解儿童乙型流感病毒的感染特点,为儿童乙型流感的预防及临床诊断与防治提供理论参考。     

禽呼肠孤病毒感染对鸡法氏囊及免疫应答的影响

研究LY株禽呼肠孤病毒(ARV)感染1日龄SPF鸡后对法氏囊发育影响,对传染性法氏囊病毒(IBDV)、禽流感病毒(AIV)、新城疫病毒(NDV)疫苗免疫诱发的抗体的影响,及对强毒株IBDV致病作用的影响。结果表明,LY株ARV感染1日龄SPF鸡可引起法氏囊萎缩和部分淋巴细胞减少,但对增重及AIV和NDV疫苗免疫后抗体滴度却没有显著影响。ARV感染可降低弱毒IBDV疫苗免疫后的抗体反应,但对随后IBDV强毒株攻毒的抵抗力却与对照鸡无显著差异。经IBDV弱毒疫苗免疫后,再接种强毒株IBDV,不会引起死亡,但却仍能显著抑制对AIV、NDV疫苗免疫后的抗体滴度。然而,对于1~7日龄经ARV感染的鸡,IBDV强毒的这种免疫抑制作用又显著低于未经ARV感染的对照鸡。     

Parasite infections in a social carnivore: Evidence of their fitness consequences and factors modulating infection load

There are substantial individual differences in parasite composition and infection load in wildlife populations. Few studies have investigated the factors shaping this heterogeneity in large wild mammals or the impact of parasite infections on Darwinian fitness, particularly in juveniles. A host's parasite composition and infection load can be shaped by factors that determine contact with infective parasite stages and those that determine the host's resistance to infection, such as abiotic and social environmental factors, and age. Host–parasite interactions and synergies between coinfecting parasites may also be important. We test predictions derived from these different processes to investigate factors shaping infection loads (fecal egg/oocyte load) of two energetically costly gastrointestinal parasites: the hookworm Ancylostoma and the intracellular Cystoisospora, in juvenile spotted hyenas (Crocuta crocuta) in the Serengeti National Park, in Tanzania. We also assess whether parasite infections curtail survival to adulthood and longevity. Ancylostoma and Cystoisospora infection loads declined as the number of adult clan members increased, a result consistent with an encounter‐reduction effect whereby adults reduced encounters between juveniles and infective larvae, but were not affected by the number of juveniles in a clan. Infection loads decreased with age, possibly because active immune responses to infection improved with age. Differences in parasite load between clans possibly indicate variation in abiotic environmental factors between clan den sites. The survival of juveniles (<365 days old) to adulthood decreased with Ancylostoma load, increased with age, and was modulated by maternal social status. High‐ranking individuals with low Ancylostoma loads had a higher survivorship during the first 4 years of life than high‐ranking individuals with high Ancylostoma loads. These findings suggest that high infection loads with energetically costly parasites such as hookworms during early life can have negative fitness consequences.     

A/H6N1亚型禽流感病毒致病性评估及与2009 A/H1N1亚型流感病毒在哺乳动物体内的遗传兼容性

目的探讨人、禽流感病毒在哺乳动物体内的遗传兼容性,为下一步研究H6亚型禽流感病毒重配和致病性变异的分子机制奠定基础。方法野鸭源A/H6N1亚型禽流感病毒A/Mallard/SanJiang/275/2007以101EID50～106EID50的攻毒剂量经鼻内途径感染小鼠,通过临床症状观察、病毒滴定和病理切片观察进行病毒学和组织学两方面检测对小鼠的致病性;同时,将此病毒与2009年A/H1N1流感病毒A/Changchun/01/2009(H1N1)混合感染豚鼠,分析两株病毒在哺乳动物体内的遗传兼容性。每天采集豚鼠鼻洗液并用噬斑纯化技术获得重配病毒,对获得的重配病毒进行全基因组序列的测定。结果 H6N1亚型禽流感病毒能直接感染小鼠,但对小鼠不致死。106EID50的攻毒剂量可有效感染小鼠,攻毒后第5天,小鼠表现出被毛较粗乱、活动减少、体重下降、呼吸急促的临床症状,但至攻毒后第10天开始康复,而对照组(MOCK)小鼠在14 d的观察期内无明显临床症状。病毒滴定结果表明,该病毒主要在小鼠肺脏和鼻甲骨中复制,病毒滴度可达104.5EID50/mL。病理学观察发现感染小鼠肺泡壁增厚,有大量炎性细胞浸润,纤维蛋白渗出并伴有轻微出血;在A/H6N1和A/H1N1混合感染豚鼠的重配实验中,经过三轮噬斑纯化从豚鼠鼻洗液中分离到6株重配病毒,说明A/H6N1亚型禽流感病毒与A/H1N1亚型流感病毒具有很好的遗传兼容性,能在豚鼠体内能发生重配。结论野鸭源A/H6N1亚型流感病毒无需适应就能够感染哺乳动物;该病毒与A/H1N1流感病毒具有很好的遗传兼容性,在哺乳动物体内能够发生基因重配,产生新的重配病毒,其公共卫生意义应引起高度关注。     

Oral immunization of haemaggulutinin H5 expressed in plant endoplasmic reticulum with adjuvant saponin protects mice against highly pathogenic avian influenza A virus infection

Pandemics in poultry caused by the highly pathogenic avian influenza (HPAI) A virus occur too frequently globally, and there is growing concern about the HPAI A virus due to the possibility of a pandemic among humans. Thus, it is important to develop a vaccine against HPAI suitable for both humans and animals. Various approaches are underway to develop such vaccines. In particular, an edible vaccine would be a convenient way to vaccinate poultry because of the behaviour of the animals. However, an edible vaccine is still not available. In this study, we developed a strategy of effective vaccination of mice by the oral administration of transgenic Arabidopsis plants (HA‐TG) expressing haemagglutinin (HA) in the endoplasmic reticulum (ER). Expression of HA in the ER resulted in its high‐level accumulation, N‐glycosylation, protection from proteolytic degradation and long‐term stability. Oral administration of HA‐TG with saponin elicited high levels of HA‐specific systemic IgG and mucosal IgA responses in mice, which resulted in protection against a lethal influenza virus infection with attenuated inflammatory symptoms. Based on these results, we propose that oral administration of freeze‐dried leaf powders from transgenic plants expressing HA in the ER together with saponin is an attractive strategy for vaccination against influenza A virus.     

Investigation of avian influenza virus in poultry and wild birds due to novel avian-origin influenza A(H10N8) in Nanchang City,China

Multiple reassortment events within poultry and wild birds had resulted in the establishment of another novel avian influenza A(H10N8) virus, and finally resulted in human death in Nanchang, China. However, there was a paucity of information on the prevalence of avian influenza virus in poultry and wild birds in Nanchang area. We investigated avian influenza virus in poultry and wild birds from live poultry markets, poultry countyards, delivery vehicles, and wild-bird habitats in Nanchang. We analyzed 1036 samples from wild birds and domestic poultry collected from December 2013 to February 2014. Original biological samples were tested for the presence of avian influenza virus using specific primer and probe sets of H5, H7, H9, H10 and N8 subtypes by real-time RT-PCR. In our analysis, the majority (97.98%) of positive samples were from live poultry markets. Among the poultry samples from chickens and ducks, AIV prevalence was 26.05 and 30.81%, respectively. Mixed infection of different HA subtypes was very common. Additionally, H10 subtypes coexistence with N8 was the most prevalent agent during the emergence of H10N8. This event illustrated a long-term surveillance was so helpful for pandemic preparedness and response.     

住院患者感染甲型流感病毒早期病毒载量与疾病严重程度关系的研究

目的分析住院患者感染甲型流感病毒早期病毒载量与疾病严重程度的关系。方法回顾性分析2014年1月至2015年12月浙江大学医学院附属第一医院收治的甲型流感病毒确诊病例,收集首次痰液标本病毒检测的CT值(与病毒载量呈负相关),以及患者的人口统计学、临床症状和体征等指标信息,以CT值的中位数为界限将患者分成两组进行比较。结果共172例甲型流感病毒(排除确诊的H7N9亚型)感染患者,最常见的临床症状为发热(89.0%)、咳嗽(87.8%)和咳痰(75.6%)。有86.6%的患者肺部影像学检查异常,34.9%的患者接受辅助通气,12.2%的患者被收入ICU,住院时间M=12d(P25~P75:7~22d),9.4%的患者最终死亡。首次甲型流感病毒核酸检测的CT值M=30.1(P25~P75:25.1~34.0),高病毒载量组患者接受辅助通气的比例略高(41.2%vs 28.7%),其中接受侵入性辅助通气的比例显著高于低病毒载量组(20.0%vs 9.2%,P=0.044)。两组患者被收入ICU的比例和住院时间无显著差异,但两组间死亡率(21.2%vs 9.2%)的差异有统计学意义(P=0.034)。结论早期高病毒载量的甲型流感患者病情和预后相对较重较差。     

流感病毒感染对小鼠肠道菌群的影响及桑叶的调节作用

【摘 要】 目的 探讨流感病毒对肠道菌群的影响以及桑叶提取物在治疗小鼠流感时对肠道菌群的调节作用。方法 将36只小鼠随机分为4组,正常对照组滴鼻生理盐水,其余以流感病毒鼠肺适应株FM1滴鼻3 d,建立流感小鼠模型后,正常对照组和病毒对照组灌胃生理盐水,另2组分别以高剂量(500 mg/kg)和低剂量(100 mg/kg)灌胃桑叶提取物,连续5 d。每天检测小鼠体重,并于病毒感染前、感染后及灌胃处理后3次无菌收集小鼠粪便,培养并计数小鼠粪便中肠杆菌、肠球菌、乳酸杆菌和双歧杆菌。结果 小鼠在感染病毒后体重明显降低,桑叶提取物治疗后体重降低的趋势有所减缓。小鼠肠道菌群在感染流感后有明显的变化,但桑叶提取物治疗后肠道菌群的恢复不明显。结论 流感病毒感染能引起小鼠肠道菌群的失调,桑叶不显示调节肠道菌群的效果,表明其对流感的治疗不通过调节肠道菌群平衡来发挥作用。     

Individual genetic diversity and probability of infection by avian malaria parasites in blue tits (Cyanistes caeruleus)

Understanding the importance of host genetic diversity for coping with parasites and infectious diseases is a long‐standing goal in evolutionary biology. Here, we study the association between probability of infection by avian malaria (Plasmodium relictum) and individual genetic diversity in three blue tit (Cyanistes caeruleus) populations that strongly differ in prevalence of this parasite. For this purpose, we screened avian malaria infections and genotyped 789 blue tits across 26 microsatellite markers. We used two different arrays of markers: 14 loci classified as neutral and 12 loci classified as putatively functional. We found a significant relationship between probability of infection and host genetic diversity estimated at the subset of neutral markers that was not explained by strong local effects and did not differ among the studied populations. This relationship was not linear, and probability of infection increased up to values of homozygosity by locus (HL) around 0.15, reached a plateau at values of HL from 0.15 to 0.40 and finally declined among a small proportion of highly homozygous individuals (HL > 0.4). We did not find evidence for significant identity disequilibrium, which may have resulted from a low variance of inbreeding in the study populations and/or the small power of our set of markers to detect it. A combination of subtle positive and negative local effects and/or a saturation threshold in the association between probability of infection and host genetic diversity in combination with increased resistance to parasites in highly homozygous individuals may explain the observed negative quadratic relationship. Overall, our study highlights that parasites play an important role in shaping host genetic variation and suggests that the use of large sets of neutral markers may be more appropriate for the study of heterozygosity–fitness correlations.     

Characterization of H5N6 highly pathogenic avian influenza viruses isolated from wild and captive birds in the winter season of 2016–2017 in Northern Japan

On 15 November 2016, a black swan that had died in a zoo in Akita prefecture, northern Japan, was strongly suspected to have highly pathogenic avian influenza (HPAI); an HPAI virus (HPAIV) belonging to the H5N6 subtype was isolated from specimens taken from the bird. After the initial report, 230 cases of HPAI caused by H5N6 viruses from wild birds, captive birds, and domestic poultry farms were reported throughout the country during the winter season. In the present study, 66 H5N6 HPAIVs isolated from northern Japan were further characterized. Phylogenetic analysis of the hemagglutinin gene showed that the H5N6 viruses isolated in northern Japan clustered into Group C of Clade 2.3.4.4 together with other isolates collected in Japan, Korea and Taiwan during the winter season of 2016–2017. The antigenicity of the Japanese H5N6 isolate differed slightly from that of HPAIVs isolated previously in Japan and China. The virus exhibited high pathogenicity and a high replication capacity in chickens, whereas virus growth was slightly lower in ducks compared with that of an H5N8 HPAIV isolate collected in Japan in 2014. Comprehensive analyses of Japanese isolates, including those from central, western, and southern Japan, as well as rapid publication of this information are essential for facilitating greater control of HPAIVs.