How far to go? Determinants of migration distance in land mammals

Animal migration is a global phenomenon, but few studies have examined the substantial within‐ and between‐species variation in migration distances. We built a global database of 94 land migrations of large mammalian herbivore populations ranging from 10 to 1638 km. We examined how resource availability, spatial scale of resource variability and body size affect migration distance among populations. Resource availability measured as normalised difference vegetation index had a strong negative effect, predicting a tenfold difference in migration distances between low‐ and high‐resource areas and explaining 23% of the variation in migration distances. We found a weak, positive effect of the spatial scale of resource variability but no effect of body size. Resource‐poor environments are known to increase the size of mammalian home ranges and territories. Here, we demonstrate that for migratory populations as well, animals living in resource‐poor environments travel farther to fulfil their resource needs.     

Does phylogenetic distance aid in detecting environmental gradients related to species composition?

Questions: How should we evaluate the success of new distance measures combining community abundance and phylogenetic information? How do we interpret ordinations using these metrics? Methods: We generated synthetic data along a known environmental gradient with two hypothetical underlying phylogenetic structures: niche phylogenetically conserved or dispersed along a gradient. We also examined tree species composition associated with gradients in elevation and longitude in Oregon, USA. NMS ordinations of plots in species space from phylogenetic (PD) and Sørensen distance (SD) matrices allowed comparison of the use of PD in different scenarios. Results: PD caused plots to cluster based on the clades that they contained, reducing stress with the synthetic data but not with the real example. Phylogenetic distance highlighted clades related to gradients when these were associated. When phylogeny was not conserved along a gradient, that gradient was less strong. Regardless of phylogenetic conservation, NMS using SD consistently extracted the strongest gradients in species composition. Conclusions: The success of PD should be evaluated on how well it extracts gradients in species composition and allows community ecologists to determine which gradients are partially explained by phylogeny and not based on its ability to reduce ordination stress. PD ordinations can help community ecologists interpret niche conservation but may obscure gradients related to species composition when niches are not conserved along the gradient of interest at the scale of the study.     

Do frogs use retinal elevation to measure the distance of a barrier?

Grass frogs, Rana pipiens, will detour around a barrier to reach prey on the other side. However, if the distance between prey and barrier is short, frogs attempt to push through the barrier and reach the prey directly. The relationship between the probability of detouring and the distance between prey and barrier is the same whether the frog's starting position is 4 cm or 8 cm from the barrier. This suggests that frogs measure the absolute separation between the two objects. To discover whether the retinal elevation of the bottom of the barrier contributes to measuring this distance, the relationship between the frequency of detouring and barrier-prey distance was examined in several experiments in which the retinal position of the bottom of the barrier was manipulated. No evidence was obtained that the barrier's retinal elevation helps in gauging distance.On the other hand, retinal elevation influences strongly how far a frog lunges to reach its prey. It is suggested that different cues to distance are applied to the two classes of object because, under natural circumstances, it is difficult to judge where a barrier emerges from the ground. A barrier may be hard to detect below the horizon because of the low contrast between it and the ground, or because vegetation and ground litter mask where the barrier meets the ground. In contrast, the prey's movements make it easily detectable against a stationary background and the prey's short height means that partial occlusion will have little effect on its apparent vertical position in the visual field.     

Can a death signal half-life be used to sense the distance to a lesion site in axons?

Neuron response to injury depends on the distance to the lesion site, which means that neurons are capable of sensing this distance. Several mechanisms explaining how neurons can do this have been proposed and it is possible that neurons use a combination of several mechanisms to make such measurements. In this paper we investigate the feasibility of the simplest mechanism, which is based on the hypothesis that death signals, produced at the lesion site, propagate toward the neuron soma. The signals are propelled by dynein motors. If signals have a finite half-life, they decay as they propagate. By measuring the concentration of death signals arriving to the soma, neurons should thus be able to determine the distance to the injury site. We develop and solve a transport equation based on the above model. We investigate how a death signal distribution depends on the dynein velocity distribution. We evaluate the efficiency of such a mechanism by investigating the sensitivity of death signal concentration at the soma to the distance to the injury site. By using the hypothesis that system performance is optimized by evolution, we evaluate death signal half-lives that would maximize this sensitivity.     

Post‐fire seed predation: Does distance to unburnt vegetation matter?

Human‐induced changes to fire regimes result in smaller, more patchy fires in many peri‐urban areas, with a concomitant increase in potential edge effects. In sclerophyll vegetation, many structurally dominant serotinous plants rely on the immediate post‐fire environment for recruitment. However, there is little information about how fire attributes affect seed predation or recruitment for these species. We examined the influence of distance to unburnt vegetation on post‐dispersal seed predation for five serotinous species from sclerophyll vegetation in the Sydney region, south‐eastern Australia; Banksia serrata L.f., Banksia spinulosa Sm. var. spinulosa, Hakea gibbosa (Sm.) Cav., Hakea teretifolia (Salisb.) Britten (all Proteaceae) and Allocasuarina distyla (Vent.) L. Johnson (Casuarinaceae). We used cafeteria trials and differential exclusion of vertebrates and invertebrates to test whether rates of seed removal for these five species differed among (i) unburnt, (ii) burnt‐edge (approx. 10 m from unburnt vegetation) and (iii) burnt‐interior (approx. 100 m from unburnt vegetation) locations. When all animals had access to seeds, seeds were removed at lower rates from burnt‐interior areas than from other locations. Vertebrates (small mammals) showed this pattern markedly the first time the experiment was run, but in a repeat trial this effect disappeared. Rate of seed removal by invertebrates differed among plant species but we did not detect any such differences for removal by vertebrates. Overall rates of seed removal also differed significantly between the two fires studied. Our results indicate that small mammal seed predation can be substantial for large‐seeded serotinous shrubs, and that differences in the perimeter: area ratio, severity or size of a fire are likely to affect seed predation.     

“Transfer cells” Plant cells with wall ingrowths,specialized in relation to short distance transport of solutes—Their occurrence,structure, and development

Summary Plant cells possessing ingrowths of wall material, and hence having protoplasts with unusually high surface-to-volume ratios, may be found in a wide variety of anatomical situations and in most of the major taxa of multicellular plants. They are termed here transfer cells. Their function relates to any of four categories of trans membrane flux: 1. Absorption of solutes from the external environment (e.g. epidermis of submerged leaves), 2. Secretion of solutes to the external environment (e.g. nectaries and other glands), 3. Absorption of solutes from an internal, extracytoplasmic compartment (e.g. vascular parenchyma, haustorial-type connections, embryo sacs and embryos), 4. Secretion of solutes into an internal extracytoplasmic compartment (e.g. tapetum of anther, pericycle of root nodule). An overall assessment of their occurrence, structure, development and role in the plant is presented taking account of published information and new observations.The wall ingrowths form just as intensive transport starts; they become best developed on those faces of the cell presumed to be most active in solute transport and their form, frequency and final degree of development are within limits characteristic of the plant species and of the location of its transfer cells. Numerous mitochondria and a conspicuous endoplasmic reticulum usually accompany this wall specialization, and the relevance of these features to the exchange of solutes across the plasma membrane is discussed.Transfer cells are apparently restricted to situations where adverse surface area—volume relationships exist between donor and receptor compartments of the transport pathway and/or where the transported solutes are accompanied by a minimal flow of solvent. This suggests that selection pressures of a physiological nature may have shaped evolution of the transfer cell, its wall-membrane apparatus emerging as a module which may serve in any of several forms of intensive, short distance transport.     

Bhattacharyya’s distance measure as a precursor of genetic distance measures

In Population Genetics, two populations are distinguished from each other on the basis of the differences in the distributions of the alleles at the locus or loci under consideration. These differences are measured by a “genetic distance” between the two populations (not to be confused with genetic distance between two loci, which is based on recombination fractions) and they play a major role in inferences at the population level. Several measures of genetic distance have been proposed by different authors (Sanghvi 1953; Cavalli-Sforza and Edwards 1967; Jukes and Cantor 1969; Nei 1972; Kimura 1980; Reynoldset al 1983; reviews in Felsenstein 1991; Nei and Kumar 2000). Most of these measures are actually dissimilarity measures and not mathematically true distance measures (B-Rao and Majumdar 1999). Independently, and much before the geneticists, statisticians too were concerned with the idea of distinguishing between two (statistical) populations. In order to discriminate between two populations on the basis of one or more characters, divergence measures like “Mahalanobis’D ² statistic” or “Mahalanobis’ generalized distance” (1936) and “Bhattacharyya’s distance” (1943, 1946), Kullback-Leibler’s divergence measure (1951) etc. have been proposed by statisticians. Mukherjee and Chattopadhyaya (1986) have mentioned measures based on distances, association between two attributes and discrimination function. There are similarities between the distance measures defined by applied scientists and by theoreticians. Felsenstein (1985) shows that three of the allele frequency-based genetic distance measures were anticipated by Bhattacharyya (1946). Nei and Takezaki (1994) have also studied the effectiveness of several genetic distance measures in the context of phylogenetic analysis, including Bhattacharyya’s distance measure.     

Measuring ungulate tolerance to human with flight distance: a reliable visitor management tool?

Tourist-induced behavioural changes in large vertebrates are of concern for protected area management as they trigger a trade-off: large vertebrates attract visitors, but induced behavioral changes can reduce animal fitness and cause animals to avoid tourist-frequented zones. Behavioural response of animals to tourists is often studied to ensure informed management decision-making, a task frequently supported by flight distance analysis. In this context, guanaco (Lama guanicoe) response to tourists was studied in a protected area using two complementary methods: flight distance and sighting frequency analyses. Flight response analyses show that guanacos develop a considerable tolerance to vehicles and pedestrians in tourist areas, a reaction that extends approximately 500 m around visited areas. Such analyses thus point to (i) few areas being underused as a consequence of human presence and (ii) a low risk of tame animals being poached outside the park, all potentially leading to the conclusion that tourist visits are sustainable. However, guanaco sighting frequencies during 107 fieldwork days along 3 years show a significant reduction in sightings on days with higher Park visitor numbers. Moreover we present a formal procedure for the definition of a threshold for this to happen (247 visitors/day in our case). This suggests the potential risk of negative effects on guanaco population and a lower probability of guanaco sightings if Park visitor numbers rise beyond current figures. Results allow to conclude that assessment of human disturbance to flagship species in protected areas requires further methods in addition to flight distance.     

Ecology,not distance,explains community composition in parasites of sky-island Audubon’s Warblers

Haemosporidian parasites of birds are ubiquitous in terrestrial ecosystems, but their coevolutionary dynamics remain poorly understood. If species turnover in parasites occurs at a finer scale than turnover in hosts, widespread hosts would encounter diverse parasites, potentially diversifying as a result. Previous studies have shown that some wide-ranging hosts encounter varied haemosporidian communities throughout their range, and vice-versa. More surveys are needed to elucidate mechanisms that underpin spatial patterns of diversity in this complex multi-host multi-parasite system. We sought to understand how and why a community of avian haemosporidian parasites varies in abundance and composition across elevational transects in eight sky islands in southwestern North America. We tested whether bird community composition, environment, or geographic distance explain haemosporidian parasite species turnover in a widespread host that harbors a diverse haemosporidian community, the Audubon’s Warbler (Setophaga auduboni). We tested predictors of infection using generalized linear models, and predictors of bird and parasite community dissimilarity using generalized dissimilarity modeling. Predictors of infection differed by parasite genus: Parahaemoproteus was predicted by elevation and climate, Leucocytozoon varied idiosyncratically among mountains, and Plasmodium was unpredictable, but rare. Parasite turnover was nearly three-fold higher than bird turnover and was predicted by elevation, climate, and bird community composition, but not geographic distance. Haemosporidian communities vary strikingly at fine spatial scales (hundreds of kilometers), across which the bird community varies only subtly. The finer scale of turnover among parasites implies that their ranges may be smaller than those of their hosts. Avian host species should encounter different parasite species in different parts of their ranges, resulting in spatially varying selection on host immune systems. The fact that parasite turnover was predicted by bird turnover, even when considering environmental characteristics, implies that host species or their phylogenetic history plays a role in determining which parasite species will be present in a community.     

Effects of seedling size, El Niño drought, seedling density, and distance to nearest conspecific adult on 6-year survival of Ocotea whitei seedlings in Panamá

We present an analysis of the long-term survival of two cohorts of seedlings of the tropical canopy tree Ocotea whitei (Lauraceae) on a 1-ha plot of mature, lowland moist forest on Barro Colorado Island, Panamá. In 1980, we counted an even-aged cohort of seedlings that germinated in 1979, then measured and tagged survivors in 1981. We also measured and tagged a second, smaller cohort of seedlings that germinated in 1981. We followed the subsequent survival of all seedlings through 1985. Seedling mortality was phenotypically, temporally, and spatially non-random. Important correlates of non-random mortality included: (1) seedling size and age, (2) an El Niño drought, and (3) biotic neighborhood. Larger and older seedlings survived better than smaller and younger seedlings, respectively, and the El Niño-related drought of 1982-1983 was associated with elevated mortality rates. Seedling density, which was strongly correlated with the proximity to the nearest conspecific adult, increased mortality. The observed mortality patterns suggest that processes consistent with the Janzen-Connell hypothesis operate during the recruitment phase of O. whitei population dynamics. However, the processes causing the observed density- and distance-dependent mortality may vary with factors such as total seed number, seedling size, and climatic variation, making it difficult to determine whether time-integrated seedling-to-adult spacing mechanisms other than self-thinning operate on a given plant population. After 6 years in the hectare studied, survivors remained densest and most numerous underneath the adult trees. We conclude that only long-term demographic data, collected at a variety of scales on a variety of species, will ultimately answer the question: do Janzen-Connell effects contribute substantially to structuring tropical forests?     

The effects of city–suburb–exurb landscape context and distance to the edge on plant diversity of forests in Wuhan,China

Abstract

We analysed the relative role of landscape context (city, suburb and exurb) and distance to the edge (from forest edge to 45 m in interior) on plant diversity of natural forests in Wuhan city. The results indicated that landscape context had significant effects on plant diversity, and both landscape context and distance to the edge affect vegetation and disturbance characteristics. Landscape context was the main factor affecting richness of woods, herbs, indigenous species, forest generalists and insect or wind pollination species. These species tended to be higher in exurban forests while non-indigenous species were higher in the urban forests. The number of non-indigenous species, forest specialists, herbs and insect pollination species also depended on distance to the edge or on both interactions. Richness of non-indigenous species decreased with increasing distance to the edge in urban forest. Vegetation characteristics that shrub cover was lower and disturbance characteristics that disturbed cover and human activity were higher in the urban edge than in the suburb and exurb edge, which decreased from the edge to the interior. Therefore, we should prioritize the preservation of less disturbed and frequented forests (suburban and exurban) to buffer the invasion of non-indigenous species, and to reserve more indigenous species.     

Conformational analysis of galanin using end to end distance distribution observed by Förster resonance energy transfer

The structural dynamics of the flexible neuropeptide galanin in solution were studied by Förster resonance energy transfer measurements at different temperatures by time-resolved fluorescence spectroscopy to determine its conformational heterogeneity. Endogenous tryptophan at position 2 acted as the fluorescent donor and the non fluorescent acceptor dinitrophenyl or the fluorescent acceptor dansyl were selectively attached to lysine 25 in porcine galanin. The coexistence of different structures of the neuropeptide galanin in trifluoroethanol solution was revealed by the model independent analysis of the distribution of relaxation times from the time-resolved resonance energy transfer data. Multiple conformational states are reflected by distinct end-to-end distance populations. The conformations differ in mean donor-acceptor distance by about 15 Å, and are consistent with the extended and folded backbone conformations of two α-helical regions separated by a flexible hinge. The effect that the labelling of galanin has on binding to the receptor was also evaluated. DNP-galanin showed the same high affinity to galanin receptors as unlabelled galanin, whereas DNS-galanin had significantly reduced affinity.     

What factors potentially influence the ability of phylogenetic distance to predict trait dispersion in a temperate forest?

Although phylogenetic‐based approaches have been frequently used to infer ecological processes, they have been increasingly criticized in recent years. To date, the factors that affect phylogenetic signals and further the ability of phylogenetic distance to predict trait dispersion have been assumed but not empirically tested. Therefore, we investigate which factors potentially influence the ability of phylogenetic distance to predict trait dispersion. We quantified the phylogenetic and trait dispersions across size classes and spatial scales in a 9‐ha old‐growth temperate forest dynamics plot in northeastern China. Phylogenetic signals at the community level were generally lower than those at the species pool level, and phylogenetically clustered communities showed lower phylogenetic signals than did overdispersed communities. This pattern might explain the other three findings of our study. First, phylogenetically overdispersed communities performed better at predicting trait dispersion than did clustered communities. Second, the mean pairwise distance (MPD)‐based metric exhibited a stronger correlation with trait dispersion than did the mean nearest taxon distance (MNTD)‐based metric. Finally, the MNTD‐based metric showed that the prediction accuracy for trait dispersion decreased with increasing spatial scales, whereas its effects were weak on the MPD‐based metric. In addition, phylogeny could not determine the dispersions of all functional axes but was able to predict certain traits depending on whether they were evolutionarily conserved. These results were conserved when we removed the effects of space and environment. Our findings highlighted that using phylogenetic distance as a proxy of trait similarity might work in a temperate forest depending on the species in local communities sampled from total pool as well as the traits measured. Utilizing these rules, we should rethink the conclusions of previous studies that were based on phylogenetic‐based approaches.     

A simple and reliable approach to docking protein–protein complexes from very sparse NOE-derived intermolecular distance restraints

A simple and reliable approach for docking protein-protein complexes from very sparse NOE-derived intermolecular distance restraints (as few as three from a single point) in combination with a novel representation for an attractive potential between mapped interaction surfaces is described. Unambiguous assignments of very sparse intermolecular NOEs are obtained using a reverse labeling strategy in which one the components is fully deuterated with the exception of selective protonation of the delta-methyl groups of isoleucine, while the other component is uniformly (13)C-labeled. This labeling strategy can be readily extended to selective protonation of Ala, Leu, Val or Met. The attractive potential is described by a 'reduced' radius of gyration potential applied specifically to a subset of interfacial residues (those with an accessible surface area > or = 50% in the free proteins) that have been delineated by chemical shift perturbation. Docking is achieved by rigid body minimization on the basis of a target function comprising the sparse NOE distance restraints, a van der Waals repulsion potential and the 'reduced' radius of gyration potential. The method is demonstrated for two protein-protein complexes (EIN-HPr and IIA(Glc)-HPr) from the bacterial phosphotransferase system. In both cases, starting from 100 different random orientations of the X-ray structures of the free proteins, 100% convergence is achieved to a single cluster (with near identical atomic positions) with an overall backbone accuracy of approximately 2 A. The approach described is not limited to NMR, since interfaces can also be mapped by alanine scanning mutagenesis, and sparse intermolecular distance restraints can be derived from double cycle mutagenesis, cross-linking combined with mass spectrometry, or fluorescence energy transfer.     

What to do, or how to do it?

In this issue of Neuron, Ajemian et al. present a computational model of the activity of neurons in primary motor cortex (M1) during isometric movements in different postures. By modeling the output of M1 neurons in terms of their influence on muscles, they find each M1 neuron maps its output into a particular pattern of muscle actions.