Improving early-season estimates of olive production using airborne pollen multi-sampling sites

The aim of this study was to improve the accuracy of aeropalynological models to forecast yields in areas with heterogeneous characteristics by applying principal component analysis to integrate the airborne pollen sampled from more than one trap. The sampling was performed during the past seven years (1998–2004) in the main northeast olive regions of Portugal. Annual crop production was forecasted on the basis of airborne pollen concentration measured at flowering, comparing the performance of three different independent variables: total airborne pollen concentration sampled in each trap and a derived variable that was determined by principal component analysis of the total airborne pollen concentration sampled. The best predictive results were obtained using a logarithmic relationship with airborne pollen concentration principal component scores describing about 97% of olive fruit production variability over the last seven years. The use of this technique improved the ability of pollen to explain the production interannual variations by about 13%. The comparison between actual reported and the adjusted production showed an average spread deviation of 5%.     

Influence of meteorological parameters on Olea flowering date and airborne pollen concentration in four regions of Portugal

For calculating the total annual Olea pollen concentration, the onset of the main pollen season and the peak pollen concentration dates, using data from 1998 to 2004, predictive models were developed using multiple regression analysis. Four Portuguese regions were studied: Reguengos de Monsaraz, Valença do Douro, Braga and Elvas. The effect of some meteorological parameters such as temperature and precipitation on Olea spatial and temporal airborne pollen distribution was studied. The best correlations were found when only the pre‐peak period was used, with thermal parameters (maximum temperature) showing the highest correlation with airborne pollen distribution. Independent variables, selected by regression analysis for the predictive models, with the greatest influence on the Olea main pollen season features were accumulated number of days with rain and rainfall in the previous autumn, and temperatures (average and minimum) from January through March. The models predict 59 to 99% of the total airborne pollen concentration recorded and the initial and peak concentration dates of the main Olea pollen season.     

Predicting range expansion of the map butterfly in Northern Europe using bioclimatic models

The two main goals of this study are: (i) to examine the range shifts of a currently northwards expanding species, the map butterfly (Araschnia levana), in relation to annual variation in weather, and (ii) to test the capability of a bioclimatic envelope model, based on broad-scale European distribution data, to predict recent distributional changes (2000–2004) of the species in Finland. A significant relationship between annual maximum dispersal distance of the species and late summer temperature was detected. This suggests that the map butterfly has dispersed more actively in warmer rather than cooler summers, the most notable dispersal events being promoted by periods of exceptionally warm weather and southerly winds. The accuracy of the broad-scale bioclimatic model built for the species with European data using Generalized Additive Models (GAM) was good based on split-sample evaluation for a single period. However, the model’s performance was poor when applied to predict range shifts in Finland. Among the many potential explanations for the poor success of the transferred bioclimatic model, is the fact that bioclimatic envelope models do not generally account for species dispersal. This and other uncertainties support the view that bioclimatic models should be applied with caution when they are used to project future range shifts of species.     

Bio-separation, speciation and determination of chromium in water using partially pyrolyzed olive pomace sorbent

Speciation of Cr(III)/Cr(VI) from water using olive pomace (OP) was improved by partial pyrolysis of OP. The sorbents were characterized by physicochemical techniques. Sorption of Cr(III) on raw and partially pyrolyzed OP sorbents followed Freundlich isotherm and second-order rate kinetics. OP pyrolyzed at 150 °C (sorbent OP-150) exhibited maximum sorption capacity, favorability and the lowest sorption energy. Sorption was exothermic and spontaneous for the raw-OP and OP pyrolyzed at 100 or 150 °C; but endothermic and non-spontaneous for OP pyrolyzed at 200, 250, 300 or 400 °C. A speciation method of chromium was proposed, in which Cr(III) was selectively retained at pH 3 on sorbent OP-150; while total Cr was determined after reduction of Cr(VI). The method was selective with a detection limit for Cr(III) of 1.58 μg L⁻¹. The method was applied on natural and industrial waters (recoveries >97.7%, RSD’s <9%) and on tobacco leaves certified reference material (INCT-PVTL-6).     

The timing of ovulation with respect to sexual swelling detumescence in wild olive baboons

Baboon researchers commonly use the timing of sexual swelling detumescence to infer the timing of ovulation. These estimates are then used for a variety of purposes, including the interpretation of male and female behaviour, assessment of likely paternity, and the calculation of gestation lengths. Although captive studies have measured the timing of ovulation with respect to detumescence, this has not been measured in wild baboons. Here, we use observational data on female sexual swellings, and hormonal data measured from faeces, to investigate the timing of ovulation with respect to detumescence in wild olive baboons. Our data show similar variability in the timing of ovulation with respect to detumescence as that produced by captive studies, although there are some notable differences, including the absence of any ovulations measured on or after the day of swelling detumescence. We discuss the importance of our results for baboon researchers using swellings to infer ovulation as part of their studies.     

Expression of the major olive pollen allergen Ole e 10 in the yeast Pichia pastoris: evidence of post-translational modifications

Olive pollen allergy is a clinical disorder that affects around 20% of the population in Mediterranean areas. The major olive pollen allergen, Ole e 10, is involved in cross-reactivity phenomena and asthma induction in allergic patients, and, besides its clinical interest, Ole e 10 is the first member of a new family of plant proteins. Ole e 10-specific cDNA has been cloned in the plasmid pPICZalphaA and expressed in the methylotrophic yeast Pichia pastoris. The recombinant protein has been purified in a two chromatographic-step procedure. N-Terminal sequencing, mass spectrometry, IgG, and IgE binding assays were employed to characterize the recombinant allergen. These analyses revealed that the product undergoes a proteolytic cleavage in the N-terminal end with the loss of the first six residues. Different strategies were used to solve this problem, such as changes in the fermentation conditions and the employment of protease-deficient yeast strains. Proteolytic cleavage was minimized and about 51% of rOle e 10 was obtained as a full-length protein. Moreover, a covalent modification was found in the N-terminal end of the full-length rOle e 10. Peptide mapping and mass spectrometry analyses pointed to the existence of a phosphorylation located in a serine residue of the N-terminal segment of rOle e 10 and it was confirmed after treatment of the sample with alkaline phosphatase. Finally, both full-length and truncated rOle e 10 retained most of the IgG- and IgE-binding capabilities of the natural protein isolated from the pollen.     

Complex patterns of mating revealed in a Eucalyptus regnans seed orchard using allozyme markers and the neighbourhood model

The neighbourhood model apportions offspring of individual mother plants to self-fertilization, outcrossing to males within a circumscribed area around the mother plant (the neighbourhood), and outcrossing to males outside the neighbourhood. Formerly the model was applied only to haploid pollen gametes in the offspring of conifers, but is extended so that it can be used with genotypic data from diploid offspring of both angiosperms and gymnosperms. In addition, it is shown that the mating parameters can be estimated without independent estimates of allele frequencies in the pollen pools outside the neighbourhood; thus the model might be applied effectively to natural populations exposed to unknown external pollen sources. Parameters of the neighbourhood mating model were estimated for a 10-year-old seed orchard population of the insect-pollinated tree, Eucalyptus regnans, in southeast Australia, which contained a mixture of two geographical provenances (Victoria and Tasmania). The mating patterns revealed were complex. Crosses between trees of the same provenance occurred three times more often than crosses between trees of different provenances. Levels of self-fertilization and patterns of mating within neighbourhoods were influenced by provenance origin, crop fecundity and orchard position (central vs. edge) of mother trees. Gene dispersal, however, was extensive, with approximately 50% of effective pollen gametes coming from males more than 40 m away from mother trees (average distance between neighbouring trees was 7.4 m). Thus, insect pollinators are efficient promoters of cross-fertilization in this orchard, with the result that the effective number of males mating with each female is large.     

A probabilistic model characterizing fish assemblages of French rivers: a framework for environmental assessment

1. Management of running waters and assessment of water quality trends require the use of biological methods. Among potential indicators, fish assemblages are of particular interest because of their ability to integrate environmental variability at different spatial scales. 2. The French Water Agencies and the Ministry of the Environment initiated a research programme to develop a fish-based index that would be applicable nation-wide. Such an index should encompass the relative importance of geographic, ecoregional and local factors influencing the distribution of riverine fishes. 3. An effective way of using the information available from fish assemblages to establish such an index is through the use of the 'reference condition approach' which involves testing a fish assemblage exposed to a potential stress against a reference condition that is unexposed to such a stress. 4. Logistic regression procedures were applied, using a fish data set of 650 reference sites fairly evenly distributed across French rivers and defined by some easily measured regional and local characteristics, to elaborate the simplest possible response model that adequately explains the observed patterns of occurrence for each species of a fish assemblage at a given site of any given river. This allows us to predict a 'theoretical' assemblage at a site. 5. The models were validated using a second independent data set of 88 reference sites. Using a third data set of 88 disturbed sites, the observed assemblages were then compared against the reference condition as defined by the 'theoretical' assemblages. The amount of deviation between the expected and observed assemblages within these sites is used as a measure of degradation. 6. This approach could be used as a framework for adapting and calibrating a multimetric index, thereby serving as a practical technical reference for conducting cost-effective biological assessments of lotic systems.     

Analysing yield stability of maize genotypes using a spatial model

Summary The yield stability of some CIMMYT tropical maize (Zea mays L.) populations of early and intermediate maturity, measured by the performance of varieties derived from them, was determined. Results of the stability analyses, conducted over international environments from 1980 to 1983, indicated that selections from Mezcla Amarilla exhibited good stability in high yielding sites. Varieties derived from Antigua-Republica Dominicana tended to be more stable in unfavourable environments, whereas selections from Blanco Cristalino-1 and Blanco Dentado-2 were stable in both low and high production sites. The combination of enviromental factors in the specific test locations, namely Poza Rica (Mexico), Tocumen (Panama), Islamabad (Pakistan), and Ferkessedougou (Ivory Coast), allowed selection of varieties that are very stable in other regions of the world. The varieties formed on the basis of multilocational data do not seem to be any more stable than those formed using data from a single location.     

Predicting soybean yield in a dry and wet year using a soil productivity index

A soil-based productivity index (PI) has been developed and is being tested as a means of quantitatively assessing potential soil productivity and predicting crop yield. Validation of the PI requires the PI-yield calibration for various soil-crop-climate systems. It is hypothesized that PI predictability and accuracy would be enhanced by inclusion of a soil water balance component. This study aims at developing a sufficiency factor that accounts for dynamics of soil water influenced by weather to improve the PI predictability. Soybeans (Glycine max[L.] Merr.) were grown in 1992 and 1993 on Mexico soil (fine, montmorillonitic, mesic Mollic Endoaqualfs). Test plots had altered A-horizon thicknesses of 0, 12.5, 25, and 37.5 cm over Bt horizons. A range of PI values in the plots resulted due to A-horizon treatment. The PI increased with increasing A-horizon thicknesses or depth to the Bt horizons. The PI was highly correlated with plot yield in 1992, a relatively dry year, in comparison with 1993, a relatively wet year. Inclusion of a factor assessed by daily balance of soil water significantly enhanced PI predictive power by 20% in both years. The factor best improved the PI predictability when based on the number of soil dry-wet cycles for given depth during the growing season. This study illustrates that yearly variation of soil water induced by weather should be considered for assessing crop performance based on soil properties.     

中国东北样带（NECT）东部森林区的植被与表土花粉的定量关系

基于中国北东样带东部森林区８个植被样方和表土花粉资料,定量分析了每种植物与表土花粉类型的关系。结果表明：花粉类型与植物关系密切,在α＝０．０５的显性水平上,相关系数（ｃｏｒｒｅｌａｔｉｏｎ ｃｏｅｆｆｉｃｉｅｎｔ）Ｃ值大都在０．５以上;表土花粉组合与植物群落间有较大的相似性,相似系数（ＣＣ）大于５０％。采用定量描述花粉与植物关系的参数：联合指数（ａｓｓｏｃｉａｔｉｏｎ ｉｎｄｅｘ）Ａ、超代表性指     

Abnormalities induced by agricultural pesticides in the microsporogenesis of olive tree (Olea europaea L.) cultivars

The study evaluated the microsporogenesis of olive trees subjected to different agricultural pesticide applications during flowering. Inflorescences of cultivars Arbequina and MGS GRAP541 were subjected to agricultural pesticides: mineral oil, neem oil, dimethoate and deltamethrin. The floral buds were fixed in Carnoy for the microsporogenesis analysis and in Karnovsky for scanning electron microscopy. The slides were prepared by squash technique and staining with propionic carmine. The pollen viability was determined by Alexander’s stain and in vitro germination. Results show that the quantification of abnormalities in meiosis in the two cultivars caused significant effect among the treatments, being that all differed statistically from the control group. Both methods showed a higher percentage of viable pollens in the control treatment and lower percentage of viability with the agricultural pesticides. The method of pollen viability by staining presented the highest averages of viable pollens, but when compared together, both methods presented a strongly related positive linear correlation. It was concluded that the used chemical products increased the percentage of chromosomal abnormalities during microsporogenesis, which interfered in the pollen viability of the two analyzed cultivars. The product deltamethrin caused the strongest effect on meiosis and on pollen viability.     

Recombinant expression of Ole e 6, a Cys-enriched pollen allergen, in Pichia pastoris yeast: detection of partial oxidation of methionine by NMR

Olive pollen is one of the main causes of allergy in Mediterranean countries. Ole e 6, an olive pollen allergen, is a small (5.8 kDa) and acidic protein (pI 4.2) and no homologous proteins have been isolated or characterized so far. Ole e 6 has been efficiently expressed in the methylotrophic yeast Pichia pastoris. The cDNA encoding Ole e 6 was inserted into the plasmid vector pPIC9 and overexpressed in GS115 yeast cells. The recombinant product was purified by size-exclusion chromatography followed by reverse-phase HPLC. N-terminal sequencing, amino acid composition analysis, CD, NMR, and IgG-binding experiments were employed to characterize the purified protein. NMR data revealed the oxidation of the methionine at position 28 in approximately 50% of the recombinant protein but, although this alters its electrophoretic behavior, it did not affect folding or IgG-binding properties of rOle e 6. The recombinant form of Ole e 6 expressed in P. pastoris can be employed for structural and biochemical studies.     

Analysis of temporal changes in fish assemblages in Serpentine Creek,Queensland

Synopsis From November 1975 to April 1977 nocturnal dermersal fish were sampled fortnightly at ten sites in Serpentine Creek using a three meter beam trawl with a 3.2 cm mesh net. Forty-five species from thirty-four families were obtained totalling 14 518 individuals with the six most abundant species comprising approximately 72% of the catch. Using multiple regression techniques with Fourier transformations, the mean number of species (S) and abundance (N) of all fish were found to conform to a regular annual cyclical pattern with maxima in April and May. A trend toward declining abundances of individuals and species was present. Shannon (H′) and Gleason (G) diversity indices showed no regular seasonal trends and are considered poor indicators of pollution. In comparison with other estuarine studies at different latitudes Serpentine Creek conforms to the theory that more tropical waters have the greatest faunal diversity. Seventeen of the 22 most abundant species demonstrated a regular annual cycle of abundance. The number of species, abundance and diversity measures were greatest about 1 km from the mouth of the creek and gradually declined upstream. This was the region with highest macrobenthos diversity and with the most stable abiotic values. Temperature and/or salinity were positively correlated with the abundance of eleven species. The species were placed in five groups according to their periodic characteristics. The proportion of ‘resident’ species was low and this is consistent with Tyler's (1971) theory of temperature stabilized fish assemblages. The known biology of six species is related to their occurrence. Salinity and temperature values in the creek exhibit an annual cycle which preceeds that of Bramble Bay by approximately one month. Rainfall in the watershed was correlated with observed salinity values. It is postulated that salinity is the common feature between temperate and tropical estuaries in the maintenance of community cycles.     

Quantitative analysis of cholesterol nucleation with time in supersaturated model bile

The amount of cholesterol (Ch) crystals formed in supersaturated taurochenodeoxycholate (TCDC) - lecithin (L) solutions of the same Ch saturation index (CSI) but at different Ch thermodynamic activities (Ch A_T) was quantified at different time intervals. The initial Ch nucleation rate (i.e., amount of Ch crystals formed with respect to time) in a Ch A_T = 1.73 and TCDC to L molar ratio (TCDC:L) = 5.1 system was faster than that in a Ch A_T = 1.42 and TCDC:L = 3.4 system. Shaking could enhance the early appearance of Ch crystals and cause the fast initial Ch nucleation rates for the TCDC:L = 5.1 and the TCDC:L = 3.4 systems. The final Ch nucleation rates were faster than the initial Ch nucleation rates for the TCDC:L = 5.1 and the TCDC:L = 3.4 systems. According to a light scattering analysis of vesicle concentration in supersaturated TCDC–L solutions, vesicles provide nucleation sites only in the Ch nucleation process and the vesicle concentration may not be an important factor for the Ch nucleation rate. A model of a mixed TCDC–L micelle releasing Ch molecules together with the surface area of Ch crystals formed was used in the interpretation of the Ch nucleation.     

A Quantitative Food Web Model for the Macroinvertebrate Community of a Northern German Lowland Stream

Trophic interactions and cycling of organic carbon within the macroinvertebrate community of a Northern German lowland stream were analyzed based on a compartment model. The network model describes the structure of the food web quantifying biomass, production, and consumption of their elements, of the entire system and between trophic levels. System primary production is 153.7 g C m⁻² yr⁻¹ and invertebrate production 53.3 g C m⁻² yr⁻¹. Invertebrate consumption amounts to 702.6 g C m⁻² yr⁻¹. Main flows are identified between trophic level 1 and 2 and are connected with highly productive compartments. ‘Anodonta and Pseudanodonta’ and Dreissena polymorpha show the highest consumption of all groups with 269.9 g C m⁻² yr⁻¹ and 114.1 g C m⁻² yr⁻¹, respectively. System consumption is highest on the import from the upstream lake with 532.5 g C m⁻² yr⁻¹, sediment detritus with 135.5 g C m⁻² yr⁻¹, and primary producers with 25.7 g C m⁻² yr⁻¹. The lowest predation pressure is observed for Bivalvia with an ecotrophic efficiency of <10% and highest for Chironomidae with 91%. Approximately 20% of organic matter entering the detritus pool are recycled to the living groups of the system. Transfer efficiencies between discrete trophic levels are generally low except for transfer of detrital material between level I and II.     

Accounting for multiplicities in assessing drug safety: a three-level hierarchical mixture model

Multiple comparisons and other multiplicities are among the most difficult of problems that face statisticians, frequentists, and Bayesians alike. An example is the analysis of the many types of adverse events (AEs) that are recorded in drug clinical trials. We propose a three-level hierarchical mixed model. The most basic level is type of AE. The second level is body system, each of which contains a number of types of possibly related AEs. The highest level is the collection of all body systems. Our analysis allows for borrowing across body systems, but there is greater potential-depending on the actual data-for borrowing within each body system. The probability that a drug has caused a type of AE is greater if its rate is elevated for several types of AEs within the same body system than if the AEs with elevated rates were in different body systems. We give examples to illustrate our method and we describe its application to other types of problems.     

Quantitative analysis of chemiluminescence signals using a cooled charge-coupled device camera

Chemiluminescence has been considered an alternative to radioisotopic detection of materials in the life sciences. One application of this nonradioisotopic method is the electrophoretic mobility shift assay. The essential requirement for quantitative applications is that the chemiluminescence signal is linearly proportional to the concentration. However, the generation of chemiluminescence is a multi-step process, therefore linearity cannot be assumed. Therefore, it is important to verify linearity before applying the method as a quantitative tool. We used a commercial chemiluminescence generating system to evaluate the validity of quantitative measurements of biotin-labeled tRNA and single-stranded DNA. The results indicate that the relationship between the chemiluminescence signals and the quantity of biotin-labeled nucleic acids is hyperbolic rather than linear. However, it was found that with less than 50 fmol of biotin-labeled nucleic acid, which corresponds to 2.5 nM in 20 microl, linearity can be demonstrated within 5% error. Therefore, chemiluminescence-based quantitative measurements are a reliable method within these limitations.     

Quantitative estimation of the cost of parasitic castration in a Helisoma anceps population using a matrix population model

Larval trematodes frequently castrate their snail intermediate hosts. When castrated, the snails do not contribute offspring to the population, yet they persist and compete with the uninfected individuals for the available food resources. Parasitic castration should reduce the population growth rate lambda, but the magnitude of this decrease is unknown. The present study attempted to quantify the cost of parasitic castration at the level of the population by mathematically modeling the population of the planorbid snail Helisoma anceps in Charlie's Pond, North Carolina. Analysis of the model identified the life-history trait that most affects lambda, and the degree to which parasitic castration can lower lambda. A period matrix product model was constructed with estimates of fecundity, survival, growth rates, and infection probabilities calculated in a previous study. Elasticity analysis was performed by increasing the values of the life-history traits by 10% and recording the percentage change in lambda. Parasitic castration resulted in a 40% decrease in lambda of H. anceps. Analysis of the model suggests that decreasing the size at maturity was more effective at reducing the cost of castration than increasing survival or growth rates of the snails. The current matrix model was the first to mathematically describe a snail population, and the predictions of the model are in agreement with published research.     

Quantitative Evaluation of Aldo-keto Reductase Expression in Hepatocellular Carcinoma (HCC) Cell Lines

The involvement of aldo–keto reductases (AKRs) in tumorigenesis is widely reported, but their roles in the pathological process are not generally recognized due to inconsistent measurements of their expression. To overcome this problem, we simultaneously employed real-time PCR to examine gene expression and multiple reaction monitoring (MRM) of mass spectrometry (MS) to examine the protein expression of AKRs in five different hepatic cell lines. These include one relatively normal hepatic cell line, L-02, and four hepatocellular carcinoma (HCC) cell lines, HepG2, HuH7, BEL7402 and SMMC7721. The results of real-time PCR showed that expression of genes encoding the AKR1C family members rather than AKR1A and AKR1B was associated with tumor, and most of genes encoding AKRs were highly expressed in HuH7. Similar observations were obtained through MRM. Different from HuH7, the protein abundance of AKR1A and AKR1B was relatively consistent among the other four hepatic cell lines, while protein expression of AKR1C varied significantly compared to L-02. Therefore, we conclude that the abundant distribution of AKR1C proteins is likely to be associated with liver tumorigenesis, and the AKR expression status in HuH7 is completely different from other liver cancer cell lines. This study, for the first time, provided both overall and quantitative information regarding the expression of AKRs at both mRNA and protein levels in hepatic cell lines. Our observations put the previous use of AKRs as a biomarker into question since it is only consistent with our data from HuH7. Furthermore, the data presented herein demonstrated that quantitative evaluation and comparisons within a protein family at both mRNA and protein levels were feasible using current techniques.