Description and Phylogenetic Relationships of Spumochlamys perforata n. sp. and Spumochlamys bryora n. sp. (Amoebozoa, Arcellinida)

ABSTRACT. Spumochlamys perforata n. sp. and Spumochlamys bryora n. sp. were isolated and described from dry epiphytic moss. The morphology and ultrastructure of both species clearly demonstrate that they belong to the genus Spumochlamys (family Microchlamyiidae). They differ from its only described member, Spumochlamys iliensis (as well as from species of Microchlamys ), in the relief of the dorsal surface of the test, revealed by scanning electron microscopy, which can represent a good characteristic for species identification. They also differ in the structure of the dorsal part of the test wall (especially S. perforata ). Small subunit ribosomal DNA-based molecular phylogenetic analyses show that Spumochlamys is a deeply branching lineage of the Arcellinida, without any close affinities. Actin gene sequence analysis places this genus within the Tubulinea, close to two other arcellinid lineages but without forming a monophyletic group with them. These data together strongly suggest that the lack of resolution in the arcellinid molecular phylogenies is due to serious undersampling of taxa, a limited number of sequence data, and high divergence rates in most of the species.     

Cochliopodium arabianum n. sp. (Amorphea,Amoebozoa)

A new species of Cochliopodium isolated from freshwater at Arabia Lake in Lithonia, GA, USA is described based on light microscopic morphology, fine structure, and molecular genetic evidence. Cochliopodium arabianum n. sp., previously labeled as “isolate Con1” in prior publications, has been shown to group within the genus Cochliopodium in our molecular phylogenetic analysis. Light microscopy and fine structure evidence indicates the new isolate not only shares characters of the genus but also unique distinctive features. Cochliopodium arabianum n. sp. is typically round when stationary; or oval to sometimes broadly flabellate or triangular in shape during locomotion, with average length of 35 μm and breadth of 51 μm. Fine structure evidence indicates C. arabianum n. sp. has tower‐like scales, lacking a terminal spine, sharing high similarity with its closest relative C. actinophorum. However, the scales of C. arabianum n. sp. are unique in height and the breadth of the base plate. Both morphological and molecular data, including SSU‐rDNA and COI, indicate that this new species falls in a clade sufficiently different from other species to suggest that it is a valid new species.     

Description of Distolabrellus veechi n. gen., n. sp. (Nematoda:Rhabditidae)

A new, monotypic genus and species in the subfamily Mesorhabditinae is described and illustrated. The primary character which separates the species and genus from all others in the Rhabditidae is a lip region with six set-off and well-separated liplets of two alternating shapes. Other diagnostic characters are transverse and fine longitudinal body striations, cuticular micropores, a prismatic prostom, well-developed esophageal collar, and three denticles on each metarhabdion. Males have a peloderan, open bursa bearing two pre- and seven post-anal bursal papillae, fused spicules over 50 μm long, and paired diverticulate cement glands associated with the vas deferens.     

A New Freshwater Naked Lobose Amoeba Korotnevella venosa n. sp. (Amoebozoa,Discosea)

A new freshwater species of naked lobose amoebae Korotnevella venosa n. sp. isolated from freshwater pond in St. Petersburg, Russia was studied with light and transmission electron microscopy. Basket scales of this species have six vertical columns supporting perforated rim. The latter has tongue‐like broadening with membranous region. Vertical columns bifurcate at both ends so that neighboring columns are connected by their bifurcations forming combined structure. Basket scales of K. venosa are similar to those of Korotnevella hemistylolepis in having six full‐length vertical columns and perforated rim. At the same time, they are different in having tongue‐like broadening of perforated rim with membranous region and absence of six half‐length columns and an intermediate crosspiece. Phylogenetic trees based on 18S rDNA gene placed K. venosa either at the base of the whole Korotnevella clade, next to K. hemistylolepis, or as a sister to the clade comprising Korotnevella species with latticework basket in large scales.     

Description of Distorhabditis poonchiana n. gen., n. sp. (Nematoda: Rhabditidae) from Jammu and Kashmir,India

Distorhabditis poonchiana n. gen., n. sp. from humus in Jammu and Kashmir, India, is described and illustrated. The new genus is characterized by a small body; slightly setoff labial region; long tubular gymnostom; prominently cuticularized cheilostom; absence of glottoid apparatus; monoprodelphic reproductive system; vulva (V) = 81 to 84; spicules with trifurcated distal ends, simple gubernaculum, peloderan bursa with eight pairs of bursal papillae arranged in 1 + 1 + 1 + 2 + 1 + 2 arrangement.     

Ptolemeba n. gen., a Novel Genus of Hartmannellid Amoebae (Tubulinea,Amoebozoa); with an Emphasis on the Taxonomy of Saccamoeba

Hartmannellid amoebae are an unnatural assemblage of amoeboid organisms that are morphologically difficult to discern from one another. In molecular phylogenetic trees of the nuclear‐encoded small subunit rDNA, they occupy at least five lineages within Tubulinea, a well‐supported clade in Amoebozoa. The polyphyletic nature of the hartmannellids has led to many taxonomic problems, in particular paraphyletic genera. Recent taxonomic revisions have alleviated some of the problems. However, the genus Saccamoeba is paraphyletic and is still in need of revision as it currently occupies two distinct lineages. Here, we report a new clade on the tree of Tubulinea, which we infer represents a novel genus that we name Ptolemeba n. gen. This genus subsumes a clade of hartmannellid amoebae that were previously considered in the genus Saccamoeba, but whose mitochondrial morphology is distinct from Saccamoeba. In accordance with previous research, we formalize the clade as distinct from Saccamoeba. Transmission electron microscopy of our isolates illustrate that both molecularly discrete species can be further differentiated by their unique mitochondrial cristal morphology.     

Description of a new species of marine amoeba Korotnevella mutabilis n. sp. (Amoebozoa,Dactylopodida)

Korotnevella (Amoebozoa, Dactylopodida) is a genus of naked lobose amoebae with a dactylopodial morphotype. The cell membrane of these amoebae is covered with a monolayer of scales. The structure and size of scales are considered as species-specific features. Here, we describe a new marine species, Korotnevella mutabilis n. sp., isolated from the bottom sediment sample of Nivå Bay (Baltic Sea, The Sound) and studied with light and electron microscopy as well as with molecular phylogenetic analysis. This species has a number of morphological similarities with Korotnevella monacantholepis, such as size of the cell, L/B ratio, the nucleus structure and the type of a biotope from which both species were isolated. At the same time, Korotnevella mutabilis n. sp. differs from K. monacantholepis in the structure of basket-shaped scales: Korotnevella mutabilis n. sp. has an enclosed hammock-shaped latticework basket and up to two spines while K. monacantholepis has an opened two-row latticework basket and never has two spines. According to molecular phylogenetic analyses based on the sequences of the mitochondrial COI gene, Korotnevella mutabilis n. sp. is a distinct species, highly divergent from other Korotnevella species.     

Sauertylenchus labiodiscus n. gen., n. sp., from Australia (Nematoda:Tylenchorhynchinae)

Sauertylenchus labiodiscus n. gem, n. sp. is described and illustrated from soil around Rhagodia sp. in Australia. It can be distinguished from the most closely related genus Tylenchorhynchus Cobb, 1913 by the distinctly set-off, rounded, lip region with a conspicuous labial disc, and long thin stylet. The face view and spicules of Sauertylenchus labiodiscus are illustrated with scanning electron micrographs. The subfamilies Tylenchorhynchinae and Merlininae ale discussed.     

Description of Pararotylenchus belli n.sp. (Nematoda:Hoplolaimidae)

A new species of Pararotylenchus Baldwin &Bell, 1981 from the Pacific coastal area of California is described. Numerous females and juveniles were recovered, but no males were found. Pararotylenchus belli n.sp. is most similar to P. sphaerocephalus, but females of P. belli are shorter and have a shorter stylet and a hemispherical tail. Specimens from a cereal field in South Dakota were identified as P. colocaudatus.     

Description of Pratylenchoides sheri n. sp. (Nematoda: Pratylenchidae)

Pratylenchoides sheri n. sp., a bisexual species from the Pacific coastal area of California, is described and illustrated. Its most distinctive characters are the esophageal glands slightly overlapping the intestine dorsally, the large ventrally slanting esophago-intestinal valve, the lack of labial sectors in the first lip annule, the presence of males, and apparently functional spermatheca. Pratylenchoides sheri is morphologically similar to P. magnicauda, but differs in length and labial conformation, its more anterior vulva, and the presence of males. Relationships of head and esophagus gland lobe characters of P. sheri are compared to other Pratylenchoides species.     

The Esophageal Glands of Pratylenchus Filipjev and Apratylenchoides belli n. gen. n. sp. (Nematoda: Tylenchoidea)

The esophageal glands in the genus Pratylenchus occur in a large, single ventral lobe except for four populations in which a few specimens had the glands located dorsally. Apratylenchoides belli n. gen. n. sp. in the subfamily Radopholinae is proposed for a species having two esophageal glands in a large dorsal lobe and one gland in a smaller, shorter ventral lobe.     

Description of Paktylenchus tuberosus gen. n., sp. n. (Nematoda: Tylenchinae)

Paktylenchus tuberosus gen.n., sp.n. is described and illustrated from soil around Solanum tuberosum from Kaghan Valley, Pakistan. Paktylenchus gen.n, can be distinguished from the most closely related genus, Agelenchus Andrassy, 1954, by the distinct longitudinal striae, three incisures in the lateral field, and absence of males. Paktylenchus tuberosus shows affinities to Coslenchus Siddiqi, 1978 but differs in having an oblique vagina-to-body axis and a prominent sunken vulva with vulval flaps. Four genera of the subfamily Tylenchinae are also discussed herein.     

Description of Dolichodorus grandaspicatus n. sp. (Nematoda: Dolichodoridae)

Dolichodorus grandaspicatus n. sp., collected from soil about roots of a red maple (Acer rubrum L.) in a creek bottom near Ludwig. Johnson County, Arkansas, is described. It differs from two closely related species, D. marylandicus and D. heterocephalus, by the longer spike on the female tail, the lenght of the female tail, and the shape of the extrudable portion of the gubernaculum of the males. It further differs from D. marylandicus by having heavily sclerotized accessory pieces of the vuvla and from D. heterocephalus by having a shorter stylet.     

Basipodella harpacticola n.gen., n. sp. (Crustacea,Copepoda)

Several stages of the copepodBasipodella harpacticola n. gen., n. sp., which lives as a parasite on harpacticoid copepods, are described on the basis of four individuals obtained from the Peruvian deep-sea. The taxonomic position of the new species is discussed.     

Parvularia atlantis gen. et sp. nov., a Nucleariid Filose Amoeba (Holomycota,Opisthokonta)

The opisthokonts constitute a eukaryotic supergroup divided into two main clades: the holozoans, which include animals and their unicellular relatives, and the holomycotans, which include fungi, opisthosporidians, and nucleariids. Nucleariids are phagotrophic filose amoebae that phenotypically resemble more their distant holozoan cousins than their holomycotan phylogenetic relatives. Despite their evolutionary interest, the diversity and internal phylogenetic relationships within the nucleariids remain poorly studied. Here, we formally describe and characterize by molecular phylogeny and microscopy observations Parvularia atlantis gen. et sp. nov. (formerly Nuclearia sp. ATCC 50694), and compare its features with those of other nucleariid genera. Parvularia is an amoebal genus characterized by radiating knobbed and branching filopodia. It exhibits prominent vacuoles observable under light microscopy, a cyst‐like stage, and completely lacks cilia. P. atlantis possesses one or two nuclei with a central nucleolus, and mitochondria with flat or discoid cristae. These morphological features, although typical of nucleariids, represent a combination of characters different to those of any other described Nuclearia species. Likewise, 18S rRNA‐based phylogenetic analyses show that P. atlantis represents a distinct lineage within the nucleariids.     

Morphology and phylogeny of Vannella croatica n. sp. (Amoebozoa,Discosea, Vannellida)

We isolated and described a new species of freshwater vannellid amoeba from Krka natural reserve in Croatia – Vannella croatica n. sp. This species has certain morphological differences from all known vannellids and differs at the level of SSU sequence. It resembles in size and morphology Vannella lata; to facilitate direct comparison we publish images of V. lata CCAP 1589/12 strain (type strain, which is now lost) taken in 1999. Vannela croatica feeds on bacteria and can be easily grown in large amount in relatively pure culture and thus is suitable for molecular and biochemical studies requiring large amounts of material.     

Paramoeba aparasomata n. sp., a symbiont-free species,and its relative Paramoeba karteshi n. sp. (Amoebozoa,Dactylopodida)

Two brackish water amoebae have been isolated and studied from the benthic biotopes of the Chupa Inlet (Kandalaksha Bay, northwestern Russia). Both strains can be identified as new species of the genus Paramoeba (Amoebozoa, Dactylopodida, Paramoebidae) based on light microscopical characters, structure of microscales on the cell surface and molecular evidence based on the analyses of two genes, nuclear SSU rRNA and mitochondrial cytochrome c oxidase subunit 1 (COI). Paramoeba aparasomata n. sp. is of particular interest because this amoeba is permanently lacking a symbiotic Perkinsela-like organism (PLO) present in other species of Paramoeba and Neoparamoeba. The results obtained show that scaly dactylopodial amoebae lacking PLO are not necessarily members of Korotnevella. In particular, we suggest that Korotnevella nivo Smirnov, 1997, with microscales very similar to those of Paramoeba eilhardi and the species studied here in structure, may be in fact a member of Paramoeba. Molecular data on K. nivo have to be obtained and analysed to test this hypothesis. Based on our new results we emend the diagnosis of the genus Paramoeba to make it more fit to the current phylogenetic conception.     

Description of a marine peritrichous ciliate, Pseudovorticella sinensis n. sp. (Ciliophora, Peritrichia) from China

A new marine peritrich ciliate, Pseudovorticella sinensis n. sp. was isolated from a shrimp-farming pond in the littoral area of Qingdao, China. The morphology, infraciliature, and silverline system were studied based on living and silver-impregnated specimens. This species is characterized by (1) an elongated bell-shaped body that measures 50-60 x 35-45 microm in vivo, (2) one large, ventrally located contractile vacuole, and (3) a pellicle covered by a layer of transparent, cortical vesicles. The number of transverse silverlines from the peristomial area to the aboral ciliary wreath is 26-32, and from the aboral ciliary wreath to the scopula is 12-15. The stalk measures about 160-250 microm long x 5-6 microm wide. The spasmoneme has one row of conspicuous thecoplasmic granules, which are about 0.8 microm in diameter.