High resolution satellite imagery for tropical biodiversity studies: the devil is in the detail

While high resolution satellite remote sensing has been hailed as a very useful source of data for biodiversity assessment and monitoring, applications have been more developed in temperate areas. The biodiverse tropics offer a challenge of an altogether different magnitude for hyperspatial and hyperspectral remote sensing. This paper examines issues related to hyperspatial and hyperspectral remotely sensed imagery, which constitutes one of the most potentially powerful yet underutilized sources of for tropical research on biodiversity. Hyperspatial data with their increased pixel resolution are possibly best suited at facilitating the accurate location of features such as tree canopies, but less suited to the identification of aspects such as species identity, particularly when spatial resolution becomes too fine and pixels are smaller than the size of the object (e.g., tree canopy) being identified. Hyperspectral data on the other hand, with their high spectral resolution, can be used to record information pertaining to a range of critical plant properties related to species identity, and can be very effective used for discriminating tree species in tropical forests, despite the greater complexity of such environments. There remains a glaring gap in the easy availability of hyperspectral and hyperspatial satellite data in the tropics due to reasons of cost, data coverage, and security restrictions. Stimulating discussion on the applications of this powerful, but underutilized tool by ecologists, is the first step in promoting a more extensive use of such data for ecological studies in tropical biodiversity rich areas.     

Large-scale phylogenetic analyses reveal the causes of high tropical amphibian diversity

Many groups show higher species richness in tropical regions but the underlying causes remain unclear. Despite many competing hypotheses to explain latitudinal diversity gradients, only three processes can directly change species richness across regions: speciation, extinction and dispersal. These processes can be addressed most powerfully using large-scale phylogenetic approaches, but most previous studies have focused on small groups and recent time scales, or did not separate speciation and extinction rates. We investigate the origins of high tropical diversity in amphibians, applying new phylogenetic comparative methods to a tree of 2871 species. Our results show that high tropical diversity is explained by higher speciation in the tropics, higher extinction in temperate regions and limited dispersal out of the tropics compared with colonization of the tropics from temperate regions. These patterns are strongly associated with climate-related variables such as temperature, precipitation and ecosystem energy. Results from models of diversity dependence in speciation rate suggest that temperate clades may have lower carrying capacities and may be more saturated (closer to carrying capacity) than tropical clades. Furthermore, we estimate strikingly low tropical extinction rates over geological time scales, in stark contrast to the dramatic losses of diversity occurring in tropical regions presently.     

Some factors affecting the composition of tropical ichneumonid faunas

An increasing accumulation of data shows that tropical ichneumonid faunas are no more species-rich than extra-tropical ones, despite the fact that most of their host groups show increased tropical species-richness. This lack of increase in ichneumonid species-richness can be attributed to the absence of groups whose hosts are not present (e.g. Ctenopelmatinae) and poor tropical representation by many groups of diurnal koinobionts (e.g. Campopleginae). Low host density has been postulated as a barrier to tropical koinobiont species-richness, but it is here suggested that this is not the only limiting factor as groups of nocturnal koinobionts, such as the Ophioninae, show increased tropical species-richness. It is postulated that koinobionts have the capability of being able to locate sparse hosts, but as they host-search in flight, a prolonged daytime host-searching period in the tropics would expose them to a high level of predation pressure. By being active at night koinobionts can avoid diurnally active predators. It is also postulated that sparse hosts may be located more easily at night and more habitats may be climatically suitable for ichneumonid activity when they are not subject to direct sunlight. Idiobionts, such as the Mesostenini and Pimplini, are more species-rich and morphologically diverse in the tropics than they are in extra-tropical regions. It is suggested that this results from the fact that tropical idiobionts can be active during the whole of the diapausing period, when their hosts are available, whereas activity by temperate idiobionts is prevented by inclement weather. Although many idiobionts are probably less exposed to predators than koinobionts, many have evolved obvious protective devices.     

Bryophyte phytomass in tropical ecosystems

Knowledge about bryophyte production and phytomass in the tropics is poor and has been derived principally from studies of epiphytic bryophytes. Such work has been undertaken in Transvaal, Tanzania, Venezuela, Peru and Borneo. Except for the studies in Peru and Borneo, the vegetation types studied and the methods used have been too variable to allow many comparisons or generalizations to be made. However, in general it can be stated that phytomass of epiphytic bryophytes in equatorial latitudes increases from the tropical lowlands to the foreslline. This striking phenomenon has been hypothetically explained by gradients of factors such as precipitation, humidity, temperature and desiccation, or combinations of these. Recent experiments on the gas exchange of tropical-montane bryophytes have revealed that the rate of net assimilation decreases dramatically above 25^oC and that high temperature combined with low light intensities, as realized in the tropical lowland forest, results in high rates of respiration and insufficient net photosynthesis. Experiments with temperate bryophytes show the same results. If can be assumed that tropical lowland species have special physiological adaptations to survive these unfavourable conditions, such as a specialized phytochrome system or effective storage of photosynthetic products. Additional factors could include the relatively high nutrient supply provided by abundant precipitation in tropical montane forests, and damage to cells by strong desiccation in the tropical lowlands.     

Trichomycete gut fungi from tropical regions of the world

Fifty-nine species of gut fungi in the orders Harpellales and Asellariales, Class Trichomycetes, have been collected in eight tropical regions of the world, some species occurring in more than one geographic region. Regarding the Harpellales, the rather low number of taxa, compared to reports in more temperate localities, is due primarily to relatively few collections in the tropics, as well as the usually warmer waters found in tropical regions that often have a lower species richness of potential immature insect hosts. Asellariales in freshwater, marine, and terrestrial habitats, likewise, have been seldom inventoried in the tropics. Nonetheless, it is clear that the tropics are fertile grounds for discovering new genera and species, and future investigations will undoubtedly reveal many new taxa that will lead to a better understanding of the evolution and biogeography of Trichomycetes.     

The response of Chironomidae to sediment pollution and other environmental characteristics in urban wetlands

1. We investigated the distribution of chironomid taxa in urban wetlands in the greater Melbourne area, Australia, to test if their distribution was influenced by sediment pollution and other environmental variables. 2. For identification of the Chironomidae, DNA markers generated via polymerase chain reaction–restriction fragment length polymorphism of cytochrome c oxidase sub unit I (COI) were validated against morphology and reference specimens for more than 5000 chironomids representing over 80 species. DNA‐based identification generally concurred with morphological separation, but also indicated the existence of cryptic diversity in some genera. 3. Non‐metric multidimensional scaling (NMS) and canonical correspondence analysis (CCA) showed chironomid assemblages were structured among wetlands and could be linked to several habitat characteristics. However, Chironomidae assemblages were only weakly linked to sediment pollution. 4. Logistic regressions identified potential bioindicators of sediment pollution. Riethia stictoptera, Tanytarsus inextentus, Coelopynia and Chironomus ‘februarius’ were negatively associated and Chironomus duplex was positively associated with sediment pollution. Thresholds for the pollution sensitivities of specific species were mostly similar to those established with previous microcosm tests. 5. Several other environmental factors influenced the distribution of specific chironomid taxa. Salinity, substratum type and submerged and riparian vegetation were particularly important. 6. We conclude that specific chironomid taxa rather than assemblages have potential as bioindicators of sediment pollution provided their ecological preferences are considered and their pollution sensitivities are characterized using multiple methods. The integration of DNA‐based techniques should facilitate accurate and rapid identification of bioindicators species.     

The Latitudinal Diversity Gradient Through Deep Time: Testing the “Age of the Tropics” Hypothesis Using Carboniferous Productidine Brachiopods

The latitudinal gradient in global diversity, in which the number of species decreases away from the tropics, is widely recognized and well-studied but no consensus exists as to its cause. The “Age of the Tropics” hypothesis argues that the tropics have more species because young, ecologically dominant, tropical clades have not had sufficient time to disperse and adapt to colder climates; given time, the tropics act as a diversity pump. This hypothesis is tested using Carboniferous productidine brachiopods, which at that time were a young, ecologically dominant clade that originated in the tropics. A database of geographic occurrences indicates that productidines did not manifest a pattern of dispersal away from the tropics through time. A phylogeny of one productidine clade demonstrates that many lineages contracted, rather than expanded, their ranges over time. The results suggest that the hypothesis that the tropics are a diversity pump cannot be generalized across time and taxa.     

Endophytic fungal communities in woody perennials of three tropical forest types of the Western Ghats,southern India

Fungal endophytes of tropical trees are expected to be exceptionally species rich as a consequence of high tree diversity in the tropics and the purported host restriction among the endophytes. Based on this premise, endophytes have been regarded as a focal group for estimating fungal numbers because their possible hyperdiverse nature would reflect significantly global fungal diversity. We present our consolidated ten-year work on 75 dicotyledonous tree hosts belonging to 33 families and growing in three different types of tropical forests of the NBR in the Western Ghats, southern India. We conclude that endophyte diversity in these forests is limited due to loose host affiliations among endophytes. Some endophytes have a wide host range and colonize taxonomically disparate hosts suggesting adaptations in them to counter a variety of defense chemicals in their hosts. Furthermore, such polyphagous endophytes dominate the endophyte assemblages of different tree hosts. Individual leaves may be densely colonized but only by a few endophyte species. It appears that the environment (the type of forest in this case) has a larger role in determining the endophyte assemblage of a plant host than the taxonomy of the host plant. Thus, different tropical plant communities have to be studied for their endophyte diversity to test the generalization that endophytes are hyperdiverse in the tropics, estimate their true species richness, and use them as a predictor group for more accurate assessment of global fungal diversity.     

Patterns of communities in the tropics

Tropical countries have many times more species of most taxa than temperate ones, and small areas in the tropics have a smaller multiple of the number of species of small temperate areas. Where many species are present, abundances tend to be more equal and geographic distributions more spotty. Most tropical environments are less seasonal and more productive, and the dry areas and mountains which are relatively more seasonal and less productive have fewer species. The species which have reached offshore islands are often much commoner there and occupy expanded habitats.
To account for these relations, the following general hypothesis seems necessary:species interactions are important and the tropics have a head start on speciation. The head start, or greater rate, allows extra species to pile up in the tropics, but because of the importance of competition, no single area becomes as greatly enriched. Rather, faunal differences between areas increase. The lesser excess of tropical species in small areas is largely due to greater productivity and reduced seasonality which make marginal ways of life profitable. With more overlap in resources, the closely packed tropical species have more uniform abundances and the coexistence of these species is more precarious, causing the spotty geographic distributions.
Neither the species diversity of the food supply nor the longer breeding season (supposedly allowing staggered nesting seasons with an early shift and a later shift) is relevant to bird species diversity.     

Tropical surface temperature response to vegetation cover changes and the role of drylands

Vegetation cover creates competing effects on land surface temperature: it typically cools through enhancing energy dissipation and warms via decreasing surface albedo. Global vegetation has been previously found to overall net cool land surfaces with cooling contributions from temperate and tropical vegetation and warming contributions from boreal vegetation. Recent studies suggest that dryland vegetation across the tropics strongly contributes to this global net cooling feedback. However, observation-based vegetation-temperature interaction studies have been limited in the tropics, especially in their widespread drylands. Theoretical considerations also call into question the ability of dryland vegetation to strongly cool the surface under low water availability. Here, we use satellite observations to investigate how tropical vegetation cover influences the surface energy balance. We find that while increased vegetation cover would impart net cooling feedbacks across the tropics, net vegetal cooling effects are subdued in drylands. Using observations, we determine that dryland plants have less ability to cool the surface due to their cooling pathways being reduced by aridity, overall less efficient dissipation of turbulent energy, and their tendency to strongly increase solar radiation absorption. As a result, while proportional greening across the tropics would create an overall biophysical cooling feedback, dryland tropical vegetation reduces the overall tropical surface cooling magnitude by at least 14%, instead of enhancing cooling as suggested by previous global studies.     

Local Variation in Shredder Distribution can Explain their Oversight in Tropical Streams

Stream shredders play an important role in the breakdown of allochthonous leaf litter—a well-known, key process in temperate headwater streams. In contrast, it has been suggested that litter breakdown in tropical streams is driven by microorganisms, shredders being scarce or absent. We propose that shredders have been overlooked in some tropical streams for two reasons: (1) assuming that tropical shredders belong to the same taxa as temperate ones, without determining the diet of tropical litter fauna; and (2) the small spatial scale of most tropical stream studies, which do not account for intra- and inter-site comparisons. We explored shredder abundance and species richness in six streams in each of two tropical regions, the Australian wet tropics (AWT) and Panama (PAN), finding 734 individuals of 12 shredder species in AWT and 391 individuals of 16 species in PAN. Shredder species richness was positively related to altitude in AWT, but not in PAN. Shredder contribution to total leaf breakdown in the field was 24±3 SE percent in AWT and negligible in PAN, but this was probably due to the unsuccessful colonization of experimental cages by PAN shredders. In the laboratory, shredder contribution to total leaf breakdown was higher than in the field (35%±2 SE in AWT and 64%±3 SE in PAN) and varied with leaf decomposability. Our results support earlier indications that shredders are not scarce or functionally unimportant in the tropics, and suggest that their contribution to litter processing should be determined along altitudinal gradients.
     

Latitudinal gradients in ichneumonid species-richness in Australia

ABSTRACT.

• 1 New data from Australia support previous suggestions that the Ichneumonidae as a whole is not more species-rich in the tropics than the group is in temperate regions.
• 2 Part of the overall lack of increase in tropical species-richness results from an absence of large groups whose sawfly hosts are not present.
• 3 In comparison with temperate faunas, a larger proportion of tropical ichneumonids are generalists, exploit pupae/prepupae, or have long ovipositors, corroborating predictions made by hypotheses advanced to explain the anomalous tropical diversity of ichneumonids.
• 4 Two large groups of pupal/prepupal parasitoids (Pimplinae and Mesostenini) are more speciose in equatorial areas.
• 5 Diurnal lepidopterous larval parasitoids, and specialist lepidopterous pupal/prepupal parasitoids are scarcer in the tropics than one might expect, but nocturnal lepidopterous larval parasitoids show an increased species-richness in the tropics. It is suggested that this may be a result of a larger proportion of the suitable host larvae being nocturnally active.

     

Physical variability,diversity gradients and the ecology of temperate and tropical reefs

Traditionally, compared with the tropics, temperate systems are believed to: (i) have environments which are less favourable (i.e. harsher, more variable and less predictable); and (ii) support communities which are less diverse. Explanations for differences between temperate and tropical communities, including differences in diversity, generally rely on the former notion. The evidence for these ideas is, at best, equivocal. Organisms are subjected to physical stresses and disturbances on both temperate and tropical reefs. Communities on temperate reefs are not invariably less diverse than those in the tropics, at least at small spatial scales. Finally, there is as yet little evidence of genuine differences between the ecology of temperate and tropical communities. There is, however, much small-scale, spatial patchiness in the structure of reef communities and their physical environment. This patchiness in structure may result from patchiness in biological factors (e.g. recruitment) or in the physical environment. This small-scale variation in environmental factors may prove to be a more important determinant of community structure than the large-scale, latitudinal trends some ecologists have been obsessed with.     

Looking to the past to understand the future of tropical conservation: The importance of collecting basic data

Tropical biodiversity is under threat from a wide variety of anthropogenic stressors. Understanding the effect of major stressors—most notably land use change, over‐harvesting, emergence of novel pathogens, and climate change—is a major goal of tropical biology. However, to do so requires baseline data with which to compare present‐day patterns. Unfortunately, the tropics suffer from a lack of basic historical data; the few studies which have published such data have proven invaluable. In 1989, Fauth et al. described their studies of reptile and amphibian diversity and population demographics across tropical elevational gradients in Costa Rica. Since then, Fauth et al.'s basic ecological data have been widely used to document shifting patterns of species composition and abundance. Here, 30 years later, we argue that (a) collecting foundational ecological data remains incredibly important, especially in the tropics, and especially in those taxa which are generally understudied (e.g., reptiles and amphibians), (b) despite being one of the original goals of the 1989 study, the mechanisms driving biogeographical patterns of diversity remain unclear (both in the tropics and globally), and (c) that revisiting sites of historic biodiversity surveys—particularly those along gradients of environmental change—is incredibly important to our understanding of how tropical diversity is currently, and will continue to be, affected by activities in the Anthropocene. In its simplest terms, there has never been a time where the collection of basic data in the tropics has ever been more important.     

Building global collaboration in tropical wetland research

This article was derived from a SWS symposium held in 2007 and describes research undertaken in the tropics and subtropics by partners in the Global Wetland Consortium. It explores the role of global collaboration in science and tropical wetlands and maps out a pathway for enhanced inter-change and exchange of information and practical experience. Whilst scientific initiatives for a range of earth systems have been previously been developed, a systematic and global research initiative for wetlands that crosses cultural, scientific and economic divides is not yet operational. One option when considering such initiatives is to investigate the utility of using the more than 1800 wetlands designated as internationally important under the Ramsar Convention as the basis of an integrated and multi-node field research and global observation program for detecting and even preempting ecological change in wetlands.     

Tropical forest cover change in the 1990s and options for future monitoring

Despite the importance of the world's humid tropical forests, our knowledge concerning their rates of change remains limited. Two recent programmes (FAO 2000 Forest Resources Assessment and TREES II), exploiting the global imaging capabilities of Earth observing satellites, have recently been completed to provide information on the dynamics of tropical forest cover. The results from these independent studies show a high degree of conformity and provide a good understanding of trends at the pan-tropical level. In 1990 there were some 1150 million ha of tropical rain forest with the area of the humid tropics deforested annually estimated at 5.8 million ha (approximately twice the size of Belgium). A further 2.3 million ha of humid forest is apparently degraded annually through fragmentation, logging and/or fires. In the sub-humid and dry tropics, annual deforestation of tropical moist deciduous and tropical dry forests comes to 2.2 and 0.7 million ha, respectively. Southeast Asia is the region where forests are under the highest pressure with an annual change rate of -0.8 to -0.9%. The annual area deforested in Latin America is large, but the relative rate (-0.4 to -0.5%) is lower, owing to the vast area covered by the remaining Amazonian forests. The humid forests of Africa are being converted at a similar rate to those of Latin America (-0.4 to -0.5% per year). During this period, secondary forests have also been established, through re-growth on abandoned land and forest plantations, but with different ecological, biophysical and economic characteristics compared with primary forests. These trends are significant in all regions, but the extent of new forest cover has proven difficult to establish. These results, as well as the lack of more detailed knowledge, clearly demonstrate the need to improve sound scientific evidence to support policy. The two projects provide useful guidance for future monitoring efforts in the context of multilateral environmental agreements and of international aid, trade and development partnerships. Methodologically, the use of high-resolution remote sensing in representative samples has been shown to be cost-effective. Close collaboration between tropical institutions and inter-governmental organizations proved to be a fruitful arrangement in the different projects. To properly assist decision-making, monitoring and assessments should primarily be addressed at the national level, which also corresponds to the ratification level of the multilateral environmental agreements. The Forest Resources Assessment 2000 deforestation statistics from countries are consistent with the satellite-based estimates in Asia and America, but are significantly different in Africa, highlighting the particular need for long-term capacity-building activities in this continent.     

Aboveground Forest Biomass and the Global Carbon Balance

The long‐term net flux of carbon between terrestrial ecosystems and the atmosphere has been dominated by two factors: changes in the area of forests and per hectare changes in forest biomass resulting from management and regrowth. While these factors are reasonably well documented in countries of the northern mid‐latitudes as a result of systematic forest inventories, they are uncertain in the tropics. Recent estimates of carbon emissions from tropical deforestation have focused on the uncertainty in rates of deforestation. By using the same data for biomass, however, these studies have underestimated the total uncertainty of tropical emissions and may have biased the estimates. In particular, regional and country‐specific estimates of forest biomass reported by three successive assessments of tropical forest resources by the FAO indicate systematic changes in biomass that have not been taken into account in recent estimates of tropical carbon emissions. The ‘changes’ more likely represent improved information than real on‐the‐ground changes in carbon storage. In either case, however, the data have a significant effect on current estimates of carbon emissions from the tropics and, hence, on understanding the global carbon balance.     

Niche-tracking migrants and niche-switching residents: evolution of climatic niches in New World warblers (Parulidae)

Differences in life-history traits between tropical and temperate lineages are often attributed to differences in their climatic niche dynamics. For example, the more frequent appearance of migratory behaviour in temperate-breeding species than in species originally breeding in the tropics is believed to have resulted partly from tropical climatic stability and niche conservatism constraining tropical species from shifting their ranges. However, little is known about the patterns and processes underlying climatic niche evolution in migrant and resident animals. We evaluated the evolution of overlap in climatic niches between seasons and its relationship to migratory behaviour in the Parulidae, a family of New World passerine birds. We used ordination methods to measure seasonal niche overlap and niche breadth of 54 resident and 49 migrant species and used phylogenetic comparative methods to assess patterns of climatic niche evolution. We found that despite travelling thousands of kilometres, migrants tracked climatic conditions across the year to a greater extent than tropical residents. Migrant species had wider niches than resident species, although residents as a group occupied a wider climatic space and niches of migrants and residents overlapped extensively. Neither breeding latitude nor migratory distance explained variation among species in climatic niche overlap between seasons. Our findings support the notion that tropical species have narrower niches than temperate-breeders, but does not necessarily constrain their ability to shift or expand their geographical ranges and become migratory. Overall, the tropics may have been historically less likely to experience the suite of components that generate strong selection pressures for the evolution of migratory behaviour.     

Epiphytic macrolichen community correlates with modeled air pollutants and forest conditions

Novel systems combining bioindicators, models, and remote sensing are possible cost-effective methods to monitor regional-scale pollution. Epiphytic macrolichen communities have been widely used as air pollution bioindicators, however these communities are also affected by microclimate conditions as influenced by forest structure. We used the Finnish epiphytic macrolichen survey method SFS5670 to collect data in 27 spruce and birch dominated forests in southern Finland and northwestern Russia. The method measures the abundance and physiological damage of Hypogymnia physodes and Bryoria spp., and the frequency of 13 epiphytic macrolichen species of known sensitivity which can be used to calculate the widely used Index of Atmospheric Purity (IAP). The location of the sites represents an east–west gradient of air pollution conditions of SO₂, SO₄^2?, NO₂, NH₃ + NH₄⁺, and HNO₃ + NO₃^?. We also recorded living and dead forest structure characteristics at these sites, which we initially chose to be as similar as possible on either side of the border. Abundance and damage of H. physodes were correlated with forest structure but not with air pollution, indicating that these macrolichen variables may not be reliable bioindicators at low air pollution concentrations. However, the Index of Atmospheric Purity, calculated from observed presence/absence data of multiple epiphytic macrolichen species, was strongly correlated with sulfur and nitrogen pollutant concentrations. These results suggest that the IAP as calculated using data from the Finnish epiphytic macrolichen survey method may be a useful air pollution indicator in combination with modeled data, even in relatively clean regions.     

Ecological and biogeographical studies on the tropical rain forest of south Yunnan,SW China with a special reference to its relation with rain forests of tropical Asia

Abstract. Ecological and biogeographic analyses of the tropical rain forest in south Yunnan were made using data from seventeen sample plots and floristic inventories of about 1000 species of seed plants. The rain forest is shown to be a type of true tropical rain forest because it has almost the same profile, physiognomic characteristics, species richness per unit area, numbers of individuals in each tree species and diameter classes of trees as classic lowland tropical rain forests. As the area is at the northern margin of monsoonal tropics, the rain forest differs from equatorial lowland rain forests in having some deciduous trees in the canopy layer, fewer megaphanaerophytes and epiphytes but more species of lianas as well as more species of microphylls. In its floristic composition, about 80% of total families. 94% of total genera and more than 90% of total species are tropical, of which about 38% of genera and 74% of species are tropical Asian. Furthermore, the rain forest has not only almost the same families and genera, but also the same families rank in the top ten both in species richness and in dominance of stems, as lowland forests in southeast Asia. It is indisputable that the flora of the rain forest is part of the tropical Asian flora. However, most of the tropical families and genera have their northern limits in south Yunnan and most have their centre of species diversity in Malesia. More strictly tropical families and genera have relatively lower species richness and importance compared with lowland rain forests in tropical southeast Asia. Thus, the flora also shows characteristics of being at the margin of the tropics. Based mainly on physiognomy and floristic composition the tropical rain forest of Yunnan is classified into two types, i.e. seasonal rain forest and wet seasonal rain forest, the latter is further divided into two subtypes, i.e. mixed rain forest and dipterocarp rain forest. From analysis of geographic elements it is also shown that the tropical rain forest of Yunnan occurs at a geographical nexus with its flora coming mainly from four sources, i.e. Malesia, south Himalayas, Indochina and China.