Effects of Texture Component Orientation on Orientation Flow Visibility for 3-D Shape Perception

In images of textured 3-D surfaces, orientation flows created by the texture components parallel to the surface slant play a critical role in conveying the surface slant and shape. This study examines the visibility of these orientation flows in complex patterns. Specifically, we examine the effect of orientation of neighboring texture components on orientation flow visibility. Complex plaids consisting of gratings equally spaced in orientation were mapped onto planar and curved surfaces. The visibility of the component that creates the orientation flows was quantified by measuring its contrast threshold (CT) while varying the combination of neighboring components present in the pattern. CTs were consistently lowest only when components closest in orientation to that of the orientation flows were subtracted from the pattern. This finding suggests that a previously reported frequency-selective cross-orientation suppression mechanism involved with the perception of 3-D shape from texture is affected by proximity in orientation of concurrent texture components.     

Release from Cross-Orientation Suppression Facilitates 3D Shape Perception

Cross-orientation suppression (COS) in striate cortex has been implicated in the efficient encoding of visual stimuli. We show that release from COS facilitates the decoding of 3-D shape. In planar surfaces overlaid with textures, slanting the surface can increase the visibility of the component parallel to the slant. Since this component provides the orientation flows that signify 3-D shape, the enhancement of visibility facilitates 3-D slant perception. Contrast thresholds reveal that this enhancement results from a decrease in COS when 3-D slant creates a frequency mismatch between texture components. We show that coupling compressive nonlinearities in LGN neurons with expansive nonlinearities in cortical neurons can model the frequency-specific component of suppression.     

Contextual Effects of Scene on the Visual Perception of Object Orientation in Depth

We investigated the effect of background scene on the human visual perception of depth orientation (i.e., azimuth angle) of three-dimensional common objects. Participants evaluated the depth orientation of objects. The objects were surrounded by scenes with an apparent axis of the global reference frame, such as a sidewalk scene. When a scene axis was slightly misaligned with the gaze line, object orientation perception was biased, as if the gaze line had been assimilated into the scene axis (Experiment 1). When the scene axis was slightly misaligned with the object, evaluated object orientation was biased, as if it had been assimilated into the scene axis (Experiment 2). This assimilation may be due to confusion between the orientation of the scene and object axes (Experiment 3). Thus, the global reference frame may influence object orientation perception when its orientation is similar to that of the gaze-line or object.     

Audio-Visual Perception of 3D Cinematography: An fMRI Study Using Condition-Based and Computation-Based Analyses

The use of naturalistic stimuli to probe sensory functions in the human brain is gaining increasing interest. Previous imaging studies examined brain activity associated with the processing of cinematographic material using both standard “condition-based” designs, as well as “computational” methods based on the extraction of time-varying features of the stimuli (e.g. motion). Here, we exploited both approaches to investigate the neural correlates of complex visual and auditory spatial signals in cinematography. In the first experiment, the participants watched a piece of a commercial movie presented in four blocked conditions: 3D vision with surround sounds (3D-Surround), 3D with monaural sound (3D-Mono), 2D-Surround, and 2D-Mono. In the second experiment, they watched two different segments of the movie both presented continuously in 3D-Surround. The blocked presentation served for standard condition-based analyses, while all datasets were submitted to computation-based analyses. The latter assessed where activity co-varied with visual disparity signals and the complexity of auditory multi-sources signals. The blocked analyses associated 3D viewing with the activation of the dorsal and lateral occipital cortex and superior parietal lobule, while the surround sounds activated the superior and middle temporal gyri (S/MTG). The computation-based analyses revealed the effects of absolute disparity in dorsal occipital and posterior parietal cortices and of disparity gradients in the posterior middle temporal gyrus plus the inferior frontal gyrus. The complexity of the surround sounds was associated with activity in specific sub-regions of S/MTG, even after accounting for changes of sound intensity. These results demonstrate that the processing of naturalistic audio-visual signals entails an extensive set of visual and auditory areas, and that computation-based analyses can track the contribution of complex spatial aspects characterizing such life-like stimuli.     

Asymmetries in visual texture discrimination

Recent results have shown that texture discrimination is an asymmetrical process; texture A within texture B may be much easier to detect than texture B within texture A. Two questions regarding discrimination asymmetries are addressed: (i) what sorts of textural properties are associated with discrimination asymmetries; and (ii) what sort of architecture would yield asymmetries. Two experiments show that discrimination asymmetries obtain when textures comprise circles of different sizes (large circles are easier to detect in small than vice versa) and when circles differ only in the regularity of their placement (irregularly placed circles are easier to detect in a background of regularly placed circles than vice versa). A plausible account of texture discrimination would involve the decomposition of images via a set orientation and scale selective filters followed by a second layer of filtering to detect energy differences between adjacent regions in the original convolutions. Discrimination asymmetries provide prima facie evidence against such a model because it involves only local measurements and comparisons. We propose that discrimination asymmetries are elegantly explained if it is assumed that the responses of the orientation and scale selective filters are normalized by the degree to which similarly tuned operators are responding elsewhere in the image; viz., global normalization of filter responses. However, there are cases where such global normalization is not required to explain asymmetrical discrimination.     

Asymmetries in the Machband phenomena

The Mach bands are directly related to the size and the shape of on-center off-surround neural units in human vision. The effects of various stimulus parameters were studied on both bright and dark bands of equal plateau intensities. At low overall intensities, the dark band increases markedly in width, while the bright band does not. However, the bandwidth is more affected by the brightness slope, than by the plateau intensity per se. In this case, both bands vary approximately linearly and inversely with the log of the slope. The bright bands are slightly wider (4′) than the dark bands, for matched intensities. Both bands almost double in width with only a ±30′ para-foveal fixation. Optical blur enlarges the bands as predicted from the spread function. A comparable enlarging effect found with pupil size increase is not so readily understood. The apparent centers of the bright bands are positioned significantly more asymmetrically between the two edges than are the dark band centers. Eccentric neural units are considered as possible explanations for some of these non-linearities. Supported, in part, by Research Grant No. EY00319-05 from the National Eye Institute, National Institutes of Health, Bethesda, Maryland, and by a fight for Sight Grant-in-Aid G-428 from the National Council to Combat Blindness, Inc., New York, New York.     

Perception of Environmental Threat in the Shadow of War: The Effect of Future Orientation

People may express high concern for global warming or environmental degradation, but when forced to evaluate the severity of environmental threats in relation to other threats, environmental threats are pushed to the bottom of the list. The present study was based on the premise that prioritizing threats involves, inter alia, hierarchizing the threats according to their perceived temporal proximity and since environmental threats are perceived, relative to other threats, as more temporally distant, they rank low. Future orientation (FO) is an individual-difference variable that describes the tendency to take into account temporally distant considerations. We predicted that environmental threats would be evaluated as more severe by individuals who were more future-oriented. The strongest effect of FO was found to be on concern about global warming and environmental degradation. This indicated that environmental threats were perceived as temporally farthest and, not surprisingly, received the lowest priority. External security threat was a top-priority; its severity evaluation was uncorrelated to FO, indicating that it was perceived as temporally closest. These evaluations significantly affected environmental attitudes and behavior. The implications on promoting environmental behavior in the presence of ever-existing shorter-term existential threats are discussed.     

Asymmetries in specialization in ant-plant mutualistic networks

Mutualistic networks involving plants and their pollinators or frugivores have been shown recently to exhibit a particular asymmetrical organization of interactions among species called nestedness: a core of reciprocal generalists accompanied by specialist species that interact almost exclusively with generalists. This structure contrasts with compartmentalized assemblage structures that have been verified in antagonistic food webs. Here we evaluated whether nestedness is a property of another type of mutualism-the interactions between ants and extrafloral nectary-bearing plants--and whether species richness may lead to differences in degree of nestedness among biological communities. We investigated network structure in four communities in Mexico. Nested patterns in ant-plant networks were very similar to those previously reported for pollination and frugivore systems, indicating that this form of asymmetry in specialization is a common feature of mutualisms between free-living species, but not always present in species-poor systems. Other ecological factors also appeared to contribute to the nested asymmetry in specialization, because some assemblages showed more extreme asymmetry than others even when species richness was held constant. Our results support a promising approach for the development of multispecies coevolutionary theory, leading to the idea that specialization may coevolve in different but simple ways in antagonistic and mutualistic assemblages.     

Orientation determination by wavelets matching for 3D reconstruction of very noisy electron microscopic virus images

Background  

In order to perform a 3D reconstruction of electron microscopic images of viruses, it is necessary to determine the orientation (Euler angels) of the 2D projections of the virus. The projections containing high resolution information are usually very noisy. This paper proposes a new method, based on weighted-projection matching in wavelet space for virus orientation determination. In order to speed the retrieval of the best match between projections from a model and real virus particle, a hierarchical correlation matching method is also proposed.     

Inflammation in 3D

Our view of the response to infection is limited by current methodologies, which provide minimal spatial information on the systemic inflammatory response. In this issue, Attia et?al. (2012) describe a cutting-edge approach to image the inflammatory response to infection, which includes identification of host proteins in three dimensions.     

Asymmetries in stimulus comparisons by monkey and man

Similarity is a core concept in theories of object recognition, categorization, and reasoning. It is often conceptualized as a geometric distance in a multidimensional stimulus space. However, research in humans has revealed that similarity judgments involve more than a simple distance calculation and tend to be asymmetric when stimuli differ in factors such as prototypicality. For example, most people judge 99 to be more similar to 100 than 100 to 99. Up to now, it was not known whether such asymmetries might also occur in nonhuman subjects. This study reveals asymmetries in the pattern of errors made by four rhesus monkeys in a temporal same/different task. Monkeys usually perceived a smaller difference between two different stimuli when the first stimulus in a trial was less prototypical than the second, just as what was found previously for human subjects. The pattern of asymmetries differed between monkeys, and a control study showed that such variability is also present for human subjects. We propose that known neurophysiological mechanisms can account for asymmetry in the stimulus comparisons of both species. Thus, seemingly complex phenomena that occur when human subjects rate stimulus similarity are also present in macaques' similarity judgments and could be based on relatively simple mechanisms.     

23,24,25-Trihydroxyvitamin D3, 24,25,26-trihydroxyvitamin D3, 24-keto-25-hydroxyvitamin D3, and 23-dehydro-25-hydroxyvitamin D3: new in vivo metabolites of vitamin D3

Four new in vivo metabolites of vitamin D3 were isolated from the blood plasma of chicks given large doses of vitamin D3. The metabolites were isolated by methanol-chloroform extraction and a series of chromatographic procedures. By use of mass spectrometry, ultraviolet absorption spectrophotometry, and specific chemical reactions, the metabolites were identified as 23,24,25-trihydroxyvitamin D3, 24,25,26-trihydroxyvitamin D3, 24-keto-25-hydroxyvitamin D3 and 23-dehydro-25-hydroxyvitamin D3.     

Motor and Autonomic Asymmetries in Athletes with Different Specializations

Studies of the motor abilities and the factors affecting them are necessary for assessing the individual motor organization and optimizing training procedures. The results of this work revealed a certain relationship between characteristics of the electrical activity of muscles, the asymmetry of autonomic characteristics, and the profile of lateral organization in athletes with different specializations.     

ESyPred3D: Prediction of proteins 3D structures

MOTIVATION: Homology or comparative modeling is currently the most accurate method to predict the three-dimensional structure of proteins. It generally consists in four steps: (1) databanks searching to identify the structural homolog, (2) target-template alignment, (3) model building and optimization, and (4) model evaluation. The target-template alignment step is generally accepted as the most critical step in homology modeling. RESULTS: We present here ESyPred3D, a new automated homology modeling program. The method gets benefit of the increased alignment performances of a new alignment strategy. Alignments are obtained by combining, weighting and screening the results of several multiple alignment programs. The final three-dimensional structure is build using the modeling package MODELLER. ESyPred3D was tested on 13 targets in the CASP4 experiment (Critical Assessment of Techniques for Proteins Structural Prediction). Our alignment strategy obtains better results compared to PSI-BLAST alignments and ESyPred3D alignments are among the most accurate compared to those of participants having used the same template. AVAILABILITY: ESyPred3D is available through its web site at http://www.fundp.ac.be/urbm/bioinfo/esypred/ CONTACT: christophe.lambert@fundp.ac.be; http://www.fundp.ac.be/~lambertc