C4水稻,我们的新挑战

自从上个世纪60年代末C4光合途径发现以来,人们对工程改造现有C3粮食作物使之具有C4光合能力进行了大量努力。目前,大量分子、生理和基因组水平研究的进展和证据表明,该目标将可能在10～15年之内实现。本综述结合目前国际C4研究的现状,详述了该领域目前所涉各项研究内容的理论依据。我们首先总结过去的经典杂交实验,然后论证新一代测序技术与C4光合研究模式系统狐尾草（Setaria viridis）的发展极大的促进了我们对C4光合特征遗传发育相关基因的发现与鉴定。最后,我们强调虽然C4光合工程改造的研究目前已在世界各国大规模展开,但其最终成功仍有赖于不同国家研究基金及私立慈善基金的大力和长期共同资助。     

植物高光效基因工程育种

C₄植物所具有的C₄光合途径赋予其较高的光合作用效率,而一些主要的农作物如水稻、小麦、大豆等均为C₃作物,光合效率低下。随着生物技术的发展,通过基因工程手段利用C₄光合特性来改善C₃植物的光合效率进而提高其生物产量逐渐成为植物高光效育种的一个研究热点。综述了目前这一领域的研究进展及存在问题,预测了这一领域的发展前景。     

Exploiting the engine of C(4) photosynthesis

Ever since the discovery of C(4) photosynthesis in the mid-1960s, plant biologists have envisaged the introduction of the C(4) photosynthetic pathway into C(3) crops such as rice and soybeans. Recent advances in genomics capabilities, and new evolutionary and developmental studies indicate that C(4) engineering will be feasible in the next few decades. Furthermore, better understanding of the function of C(4) photosynthesis provides new ways to improve existing C(4) crops and bioenergy species, for example by creating varieties with ultra-high water and nitrogen use efficiencies. In the case of C(4) engineering, the main enzymes of the C(4) metabolic cycle have already been engineered into various C(3) plants. In contrast, knowledge of the genes controlling Kranz anatomy lags far behind. Combining traditional genetics, high-throughput sequencing technologies, systems biology, bioinformatics, and the use of the new C(4) model species Setaria viridis, the discovery of the key genes controlling the expression of C(4) photosynthesis can be dramatically accelerated. Sustained investment in the research areas directly related to C(4) engineering has the potential for substantial return in the decades to come, primarily by increasing crop production at a time when global food supplies are predicted to fall below world demand.     

水稻高光效育种研究进展

水稻是世界重要的粮食作物,其较低的光合效率是限制水稻产量的重要因素之一,提高水稻的光能利用率对于进一步提高水稻产量具有关键的作用,本文简要回顾国内外水稻高光效育种的发展历程和研究进展,并对杂交选育、基因工程技术、株型改良等水稻高光效育种研究途径进行了总结与展望。     

The future of C4 research--maize, Flaveria or Cleome?

C4 photosynthesis has evolved multiple times among the angiosperms: the spatial rearrangement of the photosynthetic apparatus, combined with alterations to the leaf structure, allows CO2 to be concentrated around Rubisco. Higher CO2 concentrations at Rubisco decrease the rate of oxygenation and therefore reduce the amount of energy lost through photorespiration. C4 plants are particularly prevalent in tropical and subtropical regions because they can sustain higher rates of net photosynthesis; they also represent some of our most productive crops. To date, most progress in identifying genes crucial for C4 photosynthesis has been made using maize and Flaveria. We propose that Cleome, the most closely related genus containing C4 species to the C3 model Arabidopsis, be used together with Arabidopsis resources to accelerate our progress in elucidating the genetic basis of C4 photosynthesis.     

光合作用研究进展:从分子机理到绿色革命

根据国际科学期刊Nature,Science和PhotosynthesisResearch等近年发表的60多篇文献评论了过去5年来光合作用研究领域的研究进展.这篇评论由光合机构的精细结构与光合作用的反应机理、光合作用的调节机制与环境胁迫和光合机理知识的应用与绿色革命三部分组成.第一部分包括天线和反应中心的结构、放氧机理和ATP合成的分子机理;第二部分涉及二磷酸核酮糖羧化酶/加氧酶,光抑制,氧化还原调节和光合作用的高温抑制;第三部分讨论新绿色革命的特点和艰巨性,指出新绿色革命的中心问题是作物光合效率的改善,锐利武器是基因工程,新绿色革命的成功有赖于对光合作用的深入理解和分子生物学家、植物生理学家、生物化学家与农学家们的协同努力.     

Molecular evolution and genetic engineering of C4 photosynthetic enzymes

The majority of terrestrial plants, including many important crops such as rice, wheat, soybean, and potato, are classified as C(3) plants that assimilate atmospheric CO(2) directly through the C(3) photosynthetic pathway. C(4) plants, such as maize and sugarcane, evolved from C(3) plants, acquiring the C(4) photosynthetic pathway in addition to the C(3) pathway to achieve high photosynthetic performance and high water- and nitrogen-use efficiencies. Consequently, the transfer of C(4) traits to C(3) plants is one strategy being adopted for improving the photosynthetic performance of C(3) plants. The recent application of recombinant DNA technology has made considerable progress in the molecular engineering of photosynthetic genes in the past ten years. It has deepened understanding of the evolutionary scenario of the C(4) photosynthetic genes. The strategy, based on the evolutionary scenario, has enabled enzymes involved in the C(4) pathway to be expressed at high levels and in desired locations in the leaves of C(3) plants. Although overproduction of a single C(4) enzyme can alter the carbon metabolism of C(3) plants, it does not show any positive effects on photosynthesis. Transgenic C(3) plants overproducing multiple enzymes are now being produced for improving the photosynthetic performance of C(3) plants.     

转C4光合固碳相关基因水稻的研究进展

近10年来, 转C4光合固碳相关基因水稻的研究取得了长足进展, 已受到国内外科学界的广泛关注。本文简要介绍并评述了有关方面的研究进展, 包括水稻的C4光合固碳基因工程、转C4固碳相关基因水稻光合和光氧化的生理特性及转C4光合固碳相关基因水稻的生理育种3个方面; 提出以常规育种和生物技术相结合, 开展转C4光合固碳相关基因水稻的生理育种, 是培育优质、高产超级稻的有效途径。     

转C4光合固碳相关基因水稻的研究进展

近10年来,转C4光合固碳相关基因水稻的研究取得了长足进展,已受到国内外科学界的广泛关注。本文简要介绍并评述了有关方面的研究进展,包括水稻的C4光合固碳基因工程、转C4固碳相关基因水稻光合和光氧化的生理特性及转C4光合固碳相关基因水稻的生理育种3个方面：提出以常规育种和生物技术相结合,开展转C4光合固碳相关基因水稻的生理育种,是培育优质、高产超级稻的有效途径。     

高等植物碳循环基因工程研究进展

高等植物根据其CO2同化方式的不同,可分为C3植物、C4植物和CAM植物。由于C4植物特殊的光合作用方式,其光合能力明显高于C3植物。然而,大多数农作物都是C3植物。为了改善C3植物的光合能力,人们试图通过转基因的方法来改造C3作物,以提高主要农作物如水稻（Oryza sativa）、小麦（Triticum aestivum）和大豆（Glycine max）等的光合生产力,并在这些方面做了很多有益的尝试。该文主要综述了通过转基因方法改善碳循环能力的一些进展,并对一些尚需深入研究的问题进行了探讨。     

高等植物碳循环基因工程研究进展

高等植物根据其CO2同化方式的不同, 可分为C3植物、C4植物和CAM植物。由于C4植物特殊的光合作用方式, 其光合能力明显高于C3植物。然而, 大多数农作物都是C3植物。为了改善C3植物的光合能力, 人们试图通过转基因的方法来改造C3作物, 以提高主要农作物如水稻(Oryz a sativa)、小麦(Tri ticum aestivum)和大豆(Glycine max)等的光合生产力, 并在这些方面做了很多有益的尝试。该文主要综述了通过转基因方法改善碳循环能力的一些进展, 并对一些尚需深入研究的问题进行了探讨。     

Engineering C4 photosynthetic regulatory networks

C4 photosynthesis is a complex metabolic pathway responsible for carbon fixation in major feed, food and bioenergy crops. Although many enzymes driving this pathway have been identified, regulatory mechanisms underlying this system remain elusive. C4 photosynthesis contributes to photosynthetic efficiency in major bioenergy crops such as sugarcane, Miscanthus, switchgrass, maize and sorghum, and international efforts are underway to engineer C4 photosynthesis into C3 crops. A fundamental understanding of the C4 network is thus needed. New experimental and informatics methods can facilitate the accumulation and analysis of high-throughput data to define components of the C4 system. The use of new model plants, closely related to C4 crops, will also contribute to our understanding of the mechanisms that regulate this complex and important pathway.     

Converging phenomics and genomics to study natural variation in plant photosynthetic efficiency

In recent years developments in plant phenomic approaches and facilities have gradually caught up with genomic approaches. An opportunity lies ahead to dissect complex, quantitative traits when both genotype and phenotype can be assessed at a high level of detail. This is especially true for the study of natural variation in photosynthetic efficiency, for which forward genetics studies have yielded only a little progress in our understanding of the genetic layout of the trait. High‐throughput phenotyping, primarily from chlorophyll fluorescence imaging, should help to dissect the genetics of photosynthesis at the different levels of both plant physiology and development. Specific emphasis should be directed towards understanding the acclimation of the photosynthetic machinery in fluctuating environments, which may be crucial for the identification of genetic variation for relevant traits in food crops. Facilities should preferably be designed to accommodate phenotyping of photosynthesis‐related traits in such environments. The use of forward genetics to study the genetic architecture of photosynthesis is likely to lead to the discovery of novel traits and/or genes that may be targeted in breeding or bio‐engineering approaches to improve crop photosynthetic efficiency. In the near future, big data approaches will play a pivotal role in data processing and streamlining the phenotype‐to‐gene identification pipeline.     

A critical review on the improvement of photosynthetic carbon assimilation in C3 plants using genetic engineering

Global warming is one of the most serious challenges facing us today. It may be linked to the increase in atmospheric CO2 and other greenhouse gases (GHGs), leading to a rise in sea level, notable shifts in ecosystems, and in the frequency and intensity of wild fires. There is a strong interest in stabilizing the atmospheric concentration of CO2 and other GHGs by decreasing carbon emission and/or increasing carbon sequestration. Biotic sequestration is an important and effective strategy to mitigate the effects of rising atmospheric CO2 concentrations by increasing carbon sequestration and storage capacity of ecosystems using plant photosynthesis and by decreasing carbon emission using biofuel rather than fossil fuel. Improvement of photosynthetic carbon assimilation, using transgenic engineering, potentially provides a set of available and effective tools for enhancing plant carbon sequestration. In this review, firstly different biological methods of CO2 assimilation in C3, C4 and CAM plants are introduced and three types of C4 pathways which have high photosynthetic performance and have evolved as CO2 pumps are briefly summarized. Then (i) the improvement of photosynthetic carbon assimilation of C3 plants by transgenic engineering using non-C4 genes, and (ii) the overexpression of individual or multiple C4 cycle photosynthetic genes (PEPC, PPDK, PCK, NADP-ME and NADP-MDH) in transgenic C3 plants (e.g. tobacco, potato, rice and Arabidopsis) are highlighted. Some transgenic C3 plants (e.g. tobacco, rice and Arabidopsis) overexpressing the FBP/SBPase, ictB and cytochrome c6 genes showed positive effects on photosynthetic efficiency and growth characteristics. However, over the last 28 years, efforts to overexpress individual, double or multiple C4 enzymes in C3 plants like tobacco, potato, rice, and Arabidopsis have produced mixed results that do not confirm or eliminate the possibility of improving photosynthesis of C3 plants by this approach. Finally, a prospect is provided on the challenges of enhancing carbon assimilation of C3 plants using transgenic engineering in the face of global warming, and the trends of the most promising approaches to improving the photosynthetic performance of C3 plants.     

Evolution of C4 photosynthetic genes and overexpression of maize C4 genes in rice

C3 plants including many agronomically important crops exhibit a lower photosynthetic efficiency due to inhibition of photosynthesis by O₂ and the associated photorespiration. C4 plants had evolved the C4 pathway to overcome low CO₂ and photorespiration. This review first focuses on the generation of a system for high level expression of the C4-specific gene for pyruvate, orthophosphate dikinase (Pdk), one of the key enzyme in C4 photosynthesis. Based on the results with transgenic rice plants, we have demonstrated that the regulatory system controlling thePdk expression in maize is not unique to C4 plants but rice (C3 plant) posses a similar system. Second, we discussed the possibility of the high level expression of maize C4-specific genes in transgenic rice plants. Introduction of the maize intact phosphoenolpyruvate carboxylase gene (Ppc) caused 30–100 fold higher PEPC activities than non-transgenic rice. These results demonstrated that intact C4-type genes are available for high level expression of C4 enzymes in rice plants. The extended abstract of a paper presented at the 13th International Symposium in Conjugation with Award of the International Prize for Biology “Frontier of Plant Biology”     

Natural genetic variation in plant photosynthesis

Natural genetic variation in plant photosynthesis is a largely unexplored and as a result an underused genetic resource for crop improvement. Numerous studies show genetic variation in photosynthetic traits in both crop and wild species, and there is an increasingly detailed knowledge base concerning the interaction of photosynthetic phenotypes with their environment. The genetic factors that cause this variation remain largely unknown. Investigations into natural genetic variation in photosynthesis will provide insights into the genetic regulation of this complex trait. Such insights can be used to understand evolutionary processes that affect primary production, allow greater understanding of the genetic regulation of photosynthesis and ultimately increase the productivity of our crops.     

转玉米PEPC基因水稻中有限的C4光合微循环及其生理作用

用转PEPC基因水稻(Oryza sativa L. subsp.japonica Kitaake)和原种水稻Kitaake为材料,研究了不同基因型水稻叶片中的C4光合微循环及其功能.通过测定与光合C4途径有关的关键酶,如磷酸烯醇式丙酮酸羧化酶(PEPC)、NADP -苹果酸酶(NADP -ME)、NADP -苹果酸脱氢酶(NADP -MDH)和丙酮酸磷酸双激酶(PPDK),说明原种水稻叶片中具有完整的C4光合酶体系;用外源OAA或MA饲喂叶切片或叶绿体后明显增加光合速率,证明原种水稻中具有一个有限的光合C4微循环.将玉米的PEPC基因导入原种水稻后,可大幅度提高光合C4微循环的速率.测定不同基因型的CO2交换速率,看出水稻中C4光合微循环的增强有提高净光合速率(Pn)和降低光呼吸速率/净光合速率(Pr/Pn)比值的作用.叶绿素荧光特性分析表明,C4光合微循环的增强伴随着PSⅡ电子传递效率(Fv/Fm)和光化学猝灭(qP)的增加以及非光化学猝灭(qN)的降低;这些结果为通过基因工程手段提高作物光合效率的遗传育种提供了科学根据.     

Manipulating PEPC levels in plants

This review examines the current understanding of the structural, functional and regulatory properties of C4 and C3 forms of higher plant phosphoenolpyruvate carboxylase. The emphasis is on the interactive metabolic and post-translational controls acting on the enzyme in the physiological context of C4 photosynthesis and the anaplerotic pathway. A brief overview is given concerning the recent developments of PEPC-based genetic engineering of C3 plants with the aim of improving photosynthetic performance in normal and limiting environmental conditions. So far, in spite of achieving a considerable increase in PEPC levels, more work needs to be done with respect to the correct dosage and location before that goal is reached. Some unpublished results on the transformation of maize with a sorghum C4 PEPC cDNA are also presented. They show that it is possible to increase photosynthetic PEPC levels in this C4 plant and that the modification in enzyme content has a pleiotropic physiological impact and, notably, an improved water use efficiency when water is limited.     

Towards a dynamic photosynthesis model to guide yield improvement in C4 crops

The most productive C4 food and biofuel crops, such as Saccharum officinarum (sugarcane), Sorghum bicolor (sorghum) and Zea mays (maize), all use NADP-ME-type C4 photosynthesis. Despite high productivities, these crops fall well short of the theoretical maximum solar conversion efficiency of 6%. Understanding the basis of these inefficiencies is key for bioengineering and breeding strategies to increase the sustainable productivity of these major C4 crops. Photosynthesis is studied predominantly at steady state in saturating light. In field stands of these crops light is continually changing, and often with rapid fluctuations. Although light may change in a second, the adjustment of photosynthesis may take many minutes, leading to inefficiencies. We measured the rates of CO₂ uptake and stomatal conductance of maize, sorghum and sugarcane under fluctuating light regimes. The gas exchange results were combined with a new dynamic photosynthesis model to infer the limiting factors under non-steady-state conditions. The dynamic photosynthesis model was developed from an existing C4 metabolic model for maize and extended to include: (i) post-translational regulation of key photosynthetic enzymes and their temperature responses; (ii) dynamic stomatal conductance; and (iii) leaf energy balance. Testing the model outputs against measured rates of leaf CO₂ uptake and stomatal conductance in the three C4 crops indicated that Rubisco activase, the pyruvate phosphate dikinase regulatory protein and stomatal conductance are the major limitations to the efficiency of NADP-ME-type C4 photosynthesis during dark-to-high light transitions. We propose that the level of influence of these limiting factors make them targets for bioengineering the improved photosynthetic efficiency of these key crops.