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1.
Fish play an important role in the culture of Japan, supplying the primary source of food protein. Research on fish ecology in Japan began developing about 1955, and paralleled that in North America and Europe, but has a number of unique differences. Two main research foci, stream fish ecology and ecology of Lake Biwa, were founded by H. Kawanabe and his colleagues while graduate students in D. Miyadi's laboratory at Kyoto University in the 1950s. The focus on studies of individual differences in ecology, life history, and behavior by direct observation that were developed in this laboratory had a pervasive influence on research that has continued to the present. In the 1980s, Kawanabe, who had succeeded Miyadi as laboratory head, also co-organized a major research project on the complex communities of cichlid fishes in Lake Tanganyika, which has involved nearly every major Japanese investigator in fish ecology since. A review of research conducted by Japanese investigators in stream fish ecology, ecology of fishes in lakes Biwa and Tanganyika, and marine reef fish ecology revealed a wealth of literature of which most English-speaking fish ecologists are unaware. The most striking difference between Western and Japanese research is the focus on detailed observations and experiments in natural habitats of individual differences in behavior, life history, and ecology, and how these ultimately affect processes at the population and community level, as amply demonstrated by Kawanabe's early work on ayu, Plecoglossus altivelis. This approach predated by 20–30 years the current interest in individual differences and individual-based models in North America and Europe.  相似文献   

2.
1. Two in situ experiments investigated the responses to artificially increased sediment loads of the gastropod and fish communities, and of the whole benthos, of the rocky shores of Lake Tanganyika. Sediments were emptied once onto randomly selected quadrats using SCUBA, with control quadrats receiving no addition of sediment. Quadrats were monitored up to 6 months after sediment addition. 2. While the abundance of Lavigeria grandis (Mollusca; Gastropoda) was reduced greatly by the addition of sediment, low abundance and biomass of the whole gastropod community on sediment‐impacted quadrats 6 months after sediment addition suggests more general impacts of inundation in the longer term. 3. Benthic invertebrate communities inundated by sediment had significantly fewer individuals and numbers of taxa than control communities. No significant community recovery was recorded on sediment‐impacted quadrats within the timescale of the experiment. A short‐term period of high turbidity brought about by the emptying of sediments onto sediment‐impacted quadrats also caused severe decreases in benthic invertebrate abundance on controls 10 days after sediment addition. This suggests that even short‐term pulses of sediment may have significant detrimental effects on littoral communities. 4. Although significant impacts of sediment on fish community dynamics were found, and a significant reduction in the number of benthic algivorous species was recorded immediately after sediment addition, littoral fish communities showed strong resistance overall to the addition of sediments. This apparent resistance, however, may be a consequence of the small scale at which the experiment took place. Littoral fish communities were also shown to be more dynamic than indicated previously.  相似文献   

3.
    
The cichlid family features some of the most spectacular examples of adaptive radiation. Evolutionary studies have highlighted the importance of both trophic adaptation and sexual selection in cichlid speciation. However, it is poorly understood what processes drive the composition and diversity of local cichlid species assemblages on relatively short, ecological timescales. Here, we investigate the relative importance of niche‐based and neutral processes in determining the composition and diversity of cichlid communities inhabiting various environmental conditions in the littoral zone of Lake Tanganyika, Zambia. We collected data on cichlid abundance, morphometrics, and local environments. We analyzed relationships between mean trait values, community composition, and environmental variation, and used a recently developed modeling technique (STEPCAM) to estimate the contributions of niche‐based and neutral processes to community assembly. Contrary to our expectations, our results show that stochastic processes, and not niche‐based processes, were responsible for the majority of cichlid community assembly. We also found that the relative importance of niche‐based and neutral processes was constant across environments. However, we found significant relationships between environmental variation, community trait means, and community composition. These relationships were caused by niche‐based processes, as they disappeared in simulated, purely neutrally assembled communities. Importantly, these results can potentially reconcile seemingly contrasting findings in the literature about the importance of either niche‐based or neutral‐based processes in community assembly, as we show that significant trait relationships can already be found in nearly (but not completely) neutrally assembled communities; that is, even a small deviation from neutrality can have major effects on community patterns.  相似文献   

4.
Monthly measurements of physical and chemical characteristics were made at two localities in the eastern part of a recently landlocked lagoon of Lake Tanganyika. Variables analysed were: temperature, pH, conductivity, sodium, potassium, magnesium, calcium, carbonate, bicarbonate, chloride and sulphate. Large seasonal fluctuations of salinity were recorded (1.68–8.21 g l–1). The seasonal water input controlled algal seasonality mainly through its effect on salinity and indirectly through its influence on nutrient concentration by dissolution and dilution of the excrements of the numerous cattle and other organic matter. Phytoplankton was mainly composed of Cyanophyta and Euglenophyta. Euglenophyta dominated during the dry periods with high salinity and probably very high nutrient levels, while Cyanophyta preferred moderate salt and nutrient concentrations during the rainy periods. The phytoplanktonic community was composed of a large number of perennial and a reduced quantity of annual organisms.A spatial study of the recently landlocked lagoon revealed an ascending salinity gradient, principally due to a sodium bicarbonate/carbonate enrichment, between locations near the lake and more inland situated stations. These facts point to a lake water supply and a salt concentration by evaporation in the swamps. Proportionally lower magnesium, calcium and potassium values were recorded at high salinities, due to chemical precipitation and biotic factors.A blue-green algal bloom was observed in the eastern water-body (salinity: 4.64 g l–1); simultaneously an important development of diatoms dominated the western water-body (salinity: 2.18 g l–1). No significant differences in morphometry, exposure, water temperature or nutrient levels (nitrate, nitrite, ammonia, orthophosphate) were observed. The relatively low salinity and high nutrient concentration in the western water-body probably favoured diatom development during the rainy season. The relatively higher salinity in the eastern water-body during the rainy season was probably responsible for the dominance of blue-green algae through its negative influence on silica concentration and notwithstanding the high inorganic nitrogen concentration.  相似文献   

5.
Ectomycorrhizal (ECM) fungi play major ecological roles in temperate and tropical ecosystems. Although the richness of ECM fungal communities and the factors controlling their structure have been documented at local spatial scales, how they vary at larger spatial scales remains unclear. In this issue of Molecular Ecology, Tedersoo et al. (2012) present the results of a meta‐analysis of ECM fungal community structure that sheds important new light on global‐scale patterns. Using data from 69 study systems and 6021 fungal species, the researchers found that ECM fungal richness does not fit the classic latitudinal diversity gradient in which species richness peaks at lower latitudes. Instead, richness of ECM fungal communities has a unimodal relationship with latitude that peaks in temperate zones. Intriguingly, this conclusion suggests the mechanisms driving ECM fungal community richness may differ from those of many other organisms, including their plant hosts. Future research will be key to determine the robustness of this pattern and to examine the processes that generate and maintain global‐scale gradients of ECM fungal richness.  相似文献   

6.
    
A gold rush is currently going on in microbial ecology, which is powered by the possibility to determine the full complexity of microbial communities through next‐generation sequencing. Accordingly, enormous efforts are underway to describe microbiomes worldwide, in humans, animals, plants, soil, air and the ocean. While much can be learned from these studies, only experiments will finally unravel mechanisms. One of the key questions is how a microbial community is assembled from a pool of bacteria in the environment, and how it responds to change – be it the increase in CO2 concentration in the ocean, or antibiotic treatment of the gut microbiome. The study by Zhang et al. ( 2016 ) in this issue is one of the very few that approaches this problem experimentally in the natural environment. The authors selected a habitat which is both extremely interesting and difficult to access. They studied the Thuwal Seep in the Red Sea at 850 m depth and used a remotely operated vehicle (ROV) to place a steel frame carrying substrata for biofilm growth into the brine pool and into the adjacent normal bottom water (NBW). Biofilms were allowed to develop for 3 days, and then those that had been growing in the brine pool were transported to normal bottom water and stayed there for another 3 days, and vice versa. The ‘switched’ biofilms were then compared with their source communities by metagenome sequencing. Strikingly, both ‘switched’ biofilms were now dominated by the same two species. These species were able to cope with conditions in both source ecosystems, as shown by assembly of their genomes and detection of expression of key genes. The biofilms had adapted to environmental change, rather than to brine pools or NBW. The study shows both the resilience and adaptability of biofilm communities and has implications for microbial ecology in general and even for therapeutic approaches such as transplantation of faecal microbiomes.  相似文献   

7.
In several animal taxa, genetic analyses have demonstrated that social monogamy and biparental brood care do not preclude polygamous reproduction. Few studies have been conducted in fish, but in fish species without alternative reproductive phenotypes, social monogamy was largely congruent with genetic parentage. In contrast to these findings, we report an exceptionally high level of multiple paternity in a socially monogamous cichlid fish with biparental nest defence ( Variabilichromis moorii ), inferred from microsatellite and mitochondrial data of 10 broods. Whereas all offspring in a nest shared a common mother, each brood was sired by 2 to > 10 males. None of the inferred sires was assigned a large proportion of the brood. Paternity was estimated as the minimum number of sires required to explain multilocus offspring genotypes, and as the maximum-likelihood number of sires given population allele frequencies. Analysis of simulated brood genotypes suggested that, although these two methods tend to under- and overestimate, respectively, the true number of sires, primary sires with many offspring in a brood would have been detected. Hence, the genetic data indicate that the nest tending males suffer substantial cuckoldry and provide alloparental care for a large number of unrelated fry. We have no data on the social status of the cuckolding males, but due to synchronous spawning of pairs and commitment to brood care of paired males, it is possible that most of the parasitic spawners are solitary males.  相似文献   

8.
  总被引:1,自引:0,他引:1  
Biological diversities of multiple kingdoms potentially respond in similar ways to environmental changes. However, studies either compare details of microbial diversity across general vegetation or land use classes or relate details of plant community diversity with the extent of microbially governed soil processes, via physiological profiling. Here, we test the hypothesis of shared responses of plant and rhizosphere bacterial, fungal and metazoan biodiversities (especially across‐habitat β‐diversity patterns) along a disturbance gradient encompassing grazed to abandoned Alpine pasture, on acid soil in the European Central Alps. Rhizosphere biological diversity was inferred from eDNA fractions specific to bacteria, fungi and metazoans from contrasting plant habitats indicative of different disturbance levels. We found that soil β‐diversity patterns were weakly correlated with plant diversity measures and similarly ordinated along an evident edaphic (pH, C:N, assimilable P) and disturbance gradient but, contrary to our hypothesis, did not demonstrate the same diversity patterns. While plant communities were well separated along the disturbance gradient, correlating with fungal diversity, the majority of bacterial taxa were shared between disturbance levels (75% of bacteria were ubiquitous, cf. 29% plant species). Metazoa exhibited an intermediate response, with communities at the lowest levels of disturbance partially overlapping. Thus, plant and soil biological diversities were only loosely dependent and did not exhibit strictly linked environmental responses. This probably reflects the different spatial scales of organisms (and their habitats) and capacity to invest resources in persistent multicellular tissues, suggesting that vegetation responses to environmental change are unreliable indicators of below‐ground biodiversity responses.  相似文献   

9.
Cyprichromis coloratus , a new cichlid species, is described based on 41 type specimens from the Zambian coast of Lake Tanganyika. It differs from Cyprichromis microlepidotus by having fewer scales in the longitudinal line (41–44 v . 59–70 in C. microlepidotus ) and upper lateral line (31–36 v . 47–59), from Cyprichromis leptosoma by more dorsal‐fin spines (14–15 v . 11–13 in C. leptosoma ) and longitudinal line scales (41–44 v . 38–40), from Cyprichromis pavo by fewer dorsal‐fin spines and soft rays (29–31, usually 30, in total v . 30–32, usually 31, in C. pavo ), and from Cyprichromis zonatus by shallower body depth [24·0–28·5 (26·4 ± 1·1)% of standard length v . 24·5–30·5 (28·4 ± 1·3)% in C. zonatus ] and smaller eye [eye length 25·2–30·9 (27·2 ± 1·1)% of head length v . 27·9–33·3 (30·2 ± 1·2)%]. The new species is also separable from C. microlepidotus , C. pavo and C. zonatus by absence of distinct small spots on the body ( v . pearl grey and yellowish small spots along scale rows on body at least in males of C. microlepidotus and C. pavo ), its distinct dichromatism (particularly on the caudal fin) between males of the same population ( v . dichromatism absent in C. zonatus ) and absence of vertical bands ( v . three or four distinct vertical bands beneath dorsal fin base in live males of C. zonatus ). Cyprichromis coloratus n. sp. also exhibits sexual dimorphism, females having a larger head and males having longer pelvic fin, differences which are discussed in relation to reproductive behaviour. A key to the five species of Cyprichromis is included. A lectotype is designated for Cyprichromis leptosoma .  相似文献   

10.
    
Fungi play a key role in soil–plant interactions, nutrient cycling and carbon flow and are essential for the functioning of arctic terrestrial ecosystems. Some studies have shown that the composition of fungal communities is highly sensitive to variations in environmental conditions, but little is known about how the conditions control the role of fungal communities (i.e., their ecosystem function). We used DNA metabarcoding to compare taxonomic and functional composition of fungal communities along a gradient of environmental severity in Northeast Greenland. We analysed soil samples from fell fields, heaths and snowbeds, three habitats with very contrasting abiotic conditions. We also assessed within‐habitat differences by comparing three widespread microhabitats (patches with high cover of Dryas, Salix, or bare soil). The data suggest that, along the sampled mesotopographic gradient, the greatest differences in both fungal richness and community composition are observed amongst habitats, while the effect of microhabitat is weaker, although still significant. Furthermore, we found that richness and community composition of fungi are shaped primarily by abiotic factors and to a lesser, though still significant extent, by floristic composition. Along this mesotopographic gradient, environmental severity is strongly correlated with richness in all fungal functional groups: positively in saprotrophic, pathogenic and lichenised fungi, and negatively in ectomycorrhizal and root endophytic fungi. Our results suggest complex interactions amongst functional groups, possibly due to nutrient limitation or competitive exclusion, with potential implications on soil carbon stocks. These findings are important in the light of the environmental changes predicted for the Arctic.  相似文献   

11.
    
Fungi are very abundant and functionally pivotal in Arctic terrestrial ecosystems. Yet, our understanding of their community composition, diversity and particularly their environmental drivers is superficial at the very best. In this issue of Molecular Ecology, Timling et al. ( 2014 ) describe perhaps one of the most comprehensive and geographically ambitious molecular studies on Arctic fungal communities to date. The results highlight the potential sensitivity of the fungal communities to plant communities, environmental conditions and therefore to environmental change. Thus, these studies lay a foundation to educated speculation on the fungal community migration northwards as a result of predicted climate change.  相似文献   

12.
杨胜苏  刘卫柏 《生态学报》2021,41(16):6430-6439
实施洞庭湖区\"山水林田湖草\"生态修复工程,是践行生态文明理念、遵循自然规律、破解生态环境保护难题的关键措施。由于自然灾害及人类不合理利用等因素影响,洞庭湖区生态问题日益严重,对洞庭湖区生态系统均衡和可持续发展带来威胁。基于恢复生态学理论,以洞庭湖区为研究对象,采用物能循环和物能转化的生态学原则分析洞庭湖区存在土壤重金属污染、水环境、生物多样性与植被退化和农村土地利用的生态问题,明确了\"山水林田湖草\"生命共同体中各要素及相应形成的子系统存在的相互联系和相互制约的关系,厘清洞庭湖区生态系统的生态退化过程和生态退化机制,就此提出重构生态水体、重建生态地质地貌和重现生态景观的生态恢复策略,提出妥善解决和处理洞庭湖区的生态恢复及亟需进行环境整治问题,实现自然景观的恢复重构。通过构建洞庭湖区生态系统恢复的测度指标体系和洞庭湖区生态系统恢复的监测与管控,实现洞庭湖区\"山水林田湖草\"生态恢复的目标。  相似文献   

13.
国际化学生态学文献、实验室网络资源评介   总被引:1,自引:0,他引:1  
阎凤鸣  张霖  李大建 《昆虫知识》2001,38(2):154-160
本文介绍了国际上化学生态学的文献和网络资源 ,包括重要著作简介、杂志的特点和网址、实验室的工作内容和网址 ,一些网络讨论组 ,以及主要的组织机构和会议等。  相似文献   

14.
    
There is an increasing interest to combine phylogenetic data with distributional and ecological records to assess how natural communities arrange under an evolutionary perspective. In the microbial world, there is also a need to go beyond the problematic species definition to deeply explore ecological patterns using genetic data. We explored links between evolution/phylogeny and community ecology using bacterial 16S rRNA gene information from a high‐altitude lakes district data set. We described phylogenetic community composition, spatial distribution, and β‐diversity and biogeographical patterns applying evolutionary relatedness without relying on any particular operational taxonomic unit definition. High‐altitude lakes districts usually contain a large mosaic of highly diverse small water bodies and conform a fine biogeographical model of spatially close but environmentally heterogeneous ecosystems. We sampled 18 lakes in the Pyrenees with a selection criteria focused on capturing the maximum environmental variation within the smallest geographical area. The results showed highly diverse communities nonrandomly distributed with phylogenetic β‐diversity patterns mainly shaped by the environment and not by the spatial distance. Community similarity based on both bacterial taxonomic composition and phylogenetic β‐diversity shared similar patterns and was primarily structured by similar environmental drivers. We observed a positive relationship between lake area and phylogenetic diversity with a slope consistent with highly dispersive planktonic organisms. The phylogenetic approach incorporated patterns of common ancestry into bacterial community analysis and emerged as a very convenient analytical tool for direct inter‐ and intrabiome biodiversity comparisons and sorting out microbial habitats with potential application in conservation studies.  相似文献   

15.
    
Floodplain ecosystems are characterized by alternating wet and dry phases and periodic inundation defines their ecological character. Climate change, river regulation and the construction of levees have substantially altered natural flooding and drying regimes worldwide with uncertain effects on key biotic groups. In southern Australia, we hypothesized that soil eukaryotic communities in climate change affected areas of a semi‐arid floodplain would transition towards comprising mainly dry‐soil specialist species with increasing drought severity. Here, we used 18S rRNA amplicon pyrosequencing to measure the eukaryote community composition in soils that had been depleted of water to varying degrees to confirm that reproducible transitional changes occur in eukaryotic biodiversity on this floodplain. Interflood community structures (3 years post‐flood) were dominated by persistent rather than either aquatic or dry‐specialist organisms. Only 2% of taxa were unique to dry locations by 8 years post‐flood, and 10% were restricted to wet locations (inundated a year to 2 weeks post‐flood). Almost half (48%) of the total soil biota were detected in both these environments. The discovery of a large suite of organisms able to survive nearly a decade of drought, and up to a year submerged supports the concept of inherent resilience of Australian semi‐arid floodplain soil communities under increasing pressure from climatic induced changes in water availability.  相似文献   

16.
    
Although DNA metabarcoding is an attractive approach for monitoring biodiversity, it is often difficult to detect all the species present in a bulk sample. In particular, sequence recovery for a given species depends on its biomass and mitome copy number as well as the primer set employed for PCR. To examine these variables, we constructed a mock community of terrestrial arthropods comprised of 374 species. We used this community to examine how species recovery was impacted when amplicon pools were constructed in four ways. The first two protocols involved the construction of bulk DNA extracts from different body segments (Bulk Abdomen, Bulk Leg). The other protocols involved the production of DNA extracts from single legs which were then merged prior to PCR (Composite Leg) or PCR‐amplified separately (Single Leg) and then pooled. The amplicons generated by these four treatments were then sequenced on three platforms (Illumina MiSeq, Ion Torrent PGM and Ion Torrent S5). The choice of sequencing platform did not substantially influence species recovery, although the Miseq delivered the highest sequence quality. As expected, species recovery was most efficient from the Single Leg treatment because amplicon abundance varied little among taxa. Among the three treatments where PCR occurred after pooling, the Bulk Abdomen treatment produced a more uniform read abundance than the Bulk Leg or Composite Leg treatment. Primer choice also influenced species recovery and evenness. Our results reveal how variation in protocols can have substantial impacts on perceived diversity unless sequencing coverage is sufficient to reach an asymptote.  相似文献   

17.
    
Environmental change research is plagued by the curse of dimensionality: the number of communities at risk and the number of environmental drivers are both large. This raises the pressing question if a general understanding of ecological effects is achievable. Here, we show evidence that this is indeed possible. Using theoretical and simulation-based evidence for bi- and tritrophic communities, we show that environmental change effects on coexistence are proportional to mean species responses and depend on how trophic levels on average interact prior to environmental change. We then benchmark our findings using relevant cases of environmental change, showing that means of temperature optima and of species sensitivities to pollution predict concomitant effects on coexistence. Finally, we demonstrate how to apply our theory to the analysis of field data, finding support for effects of land use change on coexistence in natural invertebrate communities.  相似文献   

18.
  总被引:4,自引:0,他引:4  
Freshwater fauna are particularly sensitive to environmental change and disturbance. Management agencies frequently use fish and amphibian biodiversity as indicators of ecosystem health and a way to prioritize and assess management strategies. Traditional aquatic bioassessment that relies on capture of organisms via nets, traps and electrofishing gear typically has low detection probabilities for rare species and can injure individuals of protected species. Our objective was to determine whether environmental DNA (eDNA) sampling and metabarcoding analysis can be used to accurately measure species diversity in aquatic assemblages with differing structures. We manipulated the density and relative abundance of eight fish and one amphibian species in replicated 206‐L mesocosms. Environmental DNA was filtered from water samples, and six mitochondrial gene fragments were Illumina‐sequenced to measure species diversity in each mesocosm. Metabarcoding detected all nine species in all treatment replicates. Additionally, we found a modest, but positive relationship between species abundance and sequencing read abundance. Our results illustrate the potential for eDNA sampling and metabarcoding approaches to improve quantification of aquatic species diversity in natural environments and point the way towards using eDNA metabarcoding as an index of macrofaunal species abundance.  相似文献   

19.
    
The arc of reception for a new technology or method – like the reception of new information itself – can pass through predictable stages, with audiences’ responses evolving from ‘I don't believe it, through ‘well, maybe’ to ‘yes, everyone knows that’ to, finally, ‘old news. The idea that one can sample a volume of water, sequence DNA out of it, and report what species are living nearby has experienced roughly this series of responses among biologists, beginning with the microbial biologists who developed genetic techniques to reveal the unseen microbiome. ‘Macrobial’ biologists and ecologists – those accustomed to dealing with species they can see and count – have been slower to adopt such molecular survey techniques, in part because of the uncertain relationship between the number of recovered DNA sequences and the abundance of whole organisms in the sampled environment. In this issue of Molecular Ecology Resources, Evans et al. ( 2015 ) quantify this relationship for a suite of nine vertebrate species consisting of eight fish and one amphibian. Having detected all of the species present with a molecular toolbox of six primer sets, they consistently find DNA abundances are associated with species’ biomasses. The strength and slope of this association vary for each species and each primer set – further evidence that there is no universal parameter linking recovered DNA to species abundance – but Evans and colleagues take a significant step towards being able to answer the next question audiences tend to ask: ‘Yes, but how many are there?’  相似文献   

20.
    
Spatial and temporal distributions of phytoplankton were studied during 1979 in the nearshore zone of Lake Ontario. Genera such as Dinobryon, Oscillatoria, and Gymnodinium tended to be found at discrete depths whereas other genera such as Cryptomonas and Rhodomonas tended to be more uniformly distributed throughout the water column. The discrete depth distribution of some of these genera compared with the weak thermal stabilization of the area suggests depth selection and habitat preference within the algal community.Physical processes probably played a major role in regulating the timing and duration of vertical diatom pulses, and resuspension from the sediment played a major role as to the timing of the autumn growth. Vertical mixing in the nearshore zone was sufficient for some diatom genera such as Tabellaria to maintain populations throughout the summer. These mixing processes, however, affect the stability of community structures and associations that develop within the water column. The role of physical processes and their potential effects on algal production in the Great Lakes is discussed.  相似文献   

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