Performance of bacterial strains used for distillery waste treatment on different substrates

Six bacterial strains were isolated and acclimatized on distillery waste. The performance of these bacterial strains in respect to growth, reduction in chemical oxygen demand (COD) values, carbon dioxide production and volatile acid production were studied on five different substrates. Glucose and xylose exhibited growth patterns similar to that on spentwash. Glucose, xylose, casein hydrolysate and amino acids led to very good reduction in COD values compared with glycerol. Rate of substrate consumption was maximum in the case of glucose followed by amino acids, casein hydrolysate, xylose and glycerol. Production of volatile acids and carbon dioxide from glucose amounted to ≈ 50% of the theoretical yield based on glycolysis and the tricarboxylic acid cycle. Production of carbon dioxide followed the usual microbiological growth pattern while volatile acids did not show any such pattern. Carbon dioxide and volatile acids appear to be the major degradation products in distillery waste treatment by these bacteria.     

Production technology for entomopathogenic nematodes and their bacterial symbionts

Entomopathogenic nematodes (genera Steinernema and Heterorhabditis) kill insects with the aid of mutualistic bacteria. The nematode–bacteria complex is mass produced for use as biopesticides using in vivo or in vitro methods, i.e., solid or liquid fermentation. In vivo production (culture in live insect hosts) is low technology, has low startup costs, and resulting nematode quality is high, yet cost efficiency is low. In vitro solid culture, i.e., growing the nematodes and bacteria on crumbled polyurethane foam, offers an intermediate level of technology and costs. In vivo production and solid culture may be improved through innovations in mechanization and streamlining. In vitro liquid culture is the most cost-efficient production method but requires the largest startup capital and nematode quality may be reduced. Liquid culture may be improved through progress in media development, nematode recovery, and bioreactor design. A variety of formulations is available to facilitate nematode storage and application. Journal of Industrial Microbiology & Biotechnology (2002) 28, 137–146 DOI: 10.1038/sj/jim/7000230 Received 16 August 2001/ Accepted in revised form 10 November 2001     

Summer bacterial populations in Mississippi River Pool 19: implications for secondary production

Bacterial populations were sampled at 37 sites in Mississippi River Pool 19. Bacterial biomass was calculated from direct epifluorescent cell counts. Bacterial production was estimated by incubating cells in situ in predator-free water inside membrane chambers and the frequency of dividing cells. Bacterial biomass in the water column ranged from 0.05 to 1.13 mg C ^-1, biomass in the vegetated areas of the pool was significantly higher than that in other habitats (P < 0.05, ANOVA). Biomass in sediments (to a depth of 10 cm) ranged from 24 to 1,073 mg C m^-2, biomass in muddy sediments was significantly higher (P < 0.05) than that in sandy sediments. Biomass on the submersed surfaces of hydrophytes was 0.06–4.90 mg bacterial C g^-1 dry weight of plant material. The vegetated habitat (water column plus vegetation) contained approximately 45 times the concentration of bacterial carbon found in nonvegetated main channel border areas and more than 100 times the concentration in the main river channel.Bacterial production rates in the water column of a vegetated section of the pool ranged from 0.03 to 3.28 g C m ^-3 s d ^-1 ; production (m ^-3) in a vegetation bed was 5.5 times that in the adjacent nonvegetated channel border areas and approximately 50 times that in the main channel. Aquatic macrophytes and associated microorganisms may be capable of providing significant inputs of carbon to secondary consumers in the pool during the summer low flow.     

Evidence for bacterial urea production in marine sediments

Abstract The quantitative importance of bacteria in urea production and turnover in a defaunated sediment from a Danish estuary was studied. After collecting the sediment, benthic infauna was removed by sieving, followed by anoxic pre-incubation for a week. Yeast extract was added to half of the samples. The urea concentration, urea production/turnover rates and the net ammonium production rate, were followed during a 338 h incubation. The urea concentration was highest in the enriched sediment, although urea production and turnover rates were the same in the enriched and control sediment, indicating that the urea concentration was controlled by the urea turnover rate constant, k _urea. Net ammonium production, urea concetrations and teh urea turnover declined towards the end of the experiment. Comparison of the net ammonium production rate and the urea turnover rate in the enriched and control treatments, showed that urea hydrolysis accounted for up to 100% of the ammonium produced, from all sources. More than 98% of the urea which was hydrolyzed, originated from production during incubation. This suggests that urea was a major nitrogen excretion product from bacteria in this sediment, and that bacteria could also be an important source of urea in other marine sediments.     

Design of a novel alkaliphilic bacterial system for triggering biopolymer gels

The use of microorganisms to trigger a delayed gelling reaction with curdlan biopolymer gelant was evaluated. The gel-triggering bacteria were strict alkaliphiles isolated from a soda lake. Using the alkaliphilic isolates to trigger gel formation, gelation time was inversely proportional to inoculum concentration and could be delayed up to 12 days after inoculation. The microbially triggered polymer system was injected into cores and then gelled in situ. Treatment of cores with the system decreased brine permeability by two to four orders of magnitude. Individual strains of the alkaliphiles had distinct effects on the polymer system, with respect to both gelling time and permanence of the polymer gel. These strain-specific traits may be exploited to design gelled polymer systems with desirable performance properties. Journal of Industrial Microbiology & Biotechnology (2000) 24, 389–395. Received 12 August 1999/ Accepted in revised form 23 March 2000     

基于细菌体系生产双链RNA的条件优化

化学杀虫剂是农业害虫防治的主要手段,然而农业害虫已对化学杀虫剂产生了抗药性。RNA农药的应用将是减少使用化学杀虫剂的一种途径。RNA农药具有专一、高效、易降解和对环境友好等优点而受到了关注,但在靶标分子、靶标分子的双链RNA（dsRNA）生产工艺和应用制剂等方面仍需进一步研究。本研究以褐飞虱Nilaparvata lugens蛋白激酶B基因的dsRNA（dsNlAKT）为例,对利用细菌体系生产dsRNA的方法进行了探究。将NlAKT构建进L4440载体后,将其转化到缺乏核酸酶（RNase Ⅲ）的大肠杆菌Escherichia coli HT115（DE3）中,进行了dsRNA生产条件的测试。结果表明：（1）当异丙基-β-D-硫代半乳糖苷（IPTG）工作浓度为0.1 mM或0.5 mM时dsRNA的产量没有明显变化,而当其工作浓度增加至1 mM时dsRNA产量明显减少;（2）在IPTG诱导时间为2~8 h范围内,添加IPTG后诱导6 h获得的dsRNA产量最多;（3）在实验室常规提取RNA方法中,增加低剂量溶菌酶预处理这一步骤可增加提取产物中dsRNA的含量。试验结果证明了采用工作浓度为0.1 mM的IPTG诱导6 h的生产条件,并在提取过程中增加溶菌酶的预处理步骤有助于获得较高的dsRNA含量。研究结果为RNA农药的生产条件提供了实验依据。     

Isolation,screening, and optimization of bacterial strains for novel transglutaminase production

Transglutaminases are a class of transferases known to form isopeptide bond between glutamine and lysine residues in a protein molecule. Increasing demand for transglutaminase in food and other industries and its low productivity have compelled researchers to isolate and screen micro-organisms with potential to produce it. In the present investigation around 200 isolates were screened for extracellular secretion of microbial transglutaminase (MTGase). Isolate B4 showed enzyme activity of 1.71?±?0.2?U/mL followed by isolate C2 which showed 1.61?±?0.17?U/mL activity, comparable with the activity of industrially used microbial strains. Biochemical analysis along with 16S r-RNA sequencing revealed these isolates (B4 and C2) to be Bacillus nakamurai and a variant of Bacillus subtilis, respectively. Amongst the various production media screened, a medium containing starch and peptone was found best for MTGase production. Correlation between growth, enzyme production, and sugar utilization was also studied and maximum enzyme production was obtained after 48 to 60?hr. Highest MTGase titer (3.95?±?0.03?U/mL for B4 and 2.65?±?0.17?U/mL for C2) was obtained by optimization of parameters. The enzyme was characterized for temperature and pH optima, pH and thermal stability, and effect of metal ions, suggesting its potential use in future applications.     

Amyloid-like properties of bacterial inclusion bodies

Bacterial inclusion bodies are major bottlenecks in protein production, narrowing the spectrum of relevant polypeptides obtained by recombinant DNA. While regarded as amorphous deposits formed by passive and rather unspecific precipitation of unfolded chains, we prove here that they are instead organized aggregates sharing important structural and biological features with amyloids. By using an Escherichia coli beta-galactosidase variant, we show that aggregation does not necessarily require unfolded polypeptide chains but rather depends on specific interactions between solvent-exposed hydrophobic stretches in partially structured species. In addition, purified inclusion bodies are efficient and highly selective nucleation seeds, promoting deposition of soluble homologous but not heterologous polypeptides in a dose-dependent manner. Finally, inclusion bodies bind amyloid-diagnostic dyes, which, jointly with Fourier transform infra red spectroscopy data, indicates a high level of organized intermolecular beta-sheet structure. The evidences of amyloid-like structure of bacterial inclusion bodies, irrespective of potential applications in bioprocess engineering, prompts the use of bacterial models to explore the molecular determinants of protein aggregation by means of simple biological systems.     

The most important bacterial diseases of glasshouse tomato in Russia

Studies of glasshouse tomato bacterial diseases agents complex have been conducted in some regions of Russia in 1987–1996. Microbiological analysis of seeds and plants of local and foreign selection made it possible to assess quality of the seed material and phytosanitary condition of tomato plants. It's very important to obtain and to cultivate healthy seed material of high quality. This is one of the main conditions of preventing epiphytoty and obtaining ecologically pure agricultiral products.     

Immobilization of cells with nitrilase activity from a thermophilic bacterial strain

Cells of the moderately thermophilic Bacillus sp. UG-5B strain, producing nitrilase (EC3.5.5.1), which converts nitriles directly to the corresponding acid and ammonia, were immobilized using different types of matrices and techniques. A variety of sol-gel silica hybrids were tested for entrapment and adsorption of bacterial cells as well as chemical binding on polysulphone membranes. Activation of the matrix surface with formaldehyde led to an increase in immobilization efficiency and operational stability of the biocatalysts. Among the supports screened, membranes gave the best results for enzyme activity and especially operational stability, with retention of 100% activity after eight reaction cycles.     

Seasonal change in the proportion of bacterial and phytoplankton production along a salinity gradient in a shallow estuary

We intended to evaluate the relative contribution of primary production versus allochthonous carbon in the production of bacterial biomass in a mesotrophic estuary. Different spatial and temporal ranges were observed in the values of bacterioplankton biomass (31–273 g C l^–1) and production (0.1–16.0 g C l^–1 h^–1, 1.5–36.8 mg C m^–2 h^–1) as well as in phytoplankton abundance (50–1700 g C l^–1) and primary production (0.1–512.9 g C l^–1 h^–1, 1.5–512.9 mg C m^–2 h^–1). Bacterial specific growth rate (0.10–1.68 d^–1) during the year did not fluctuate as much as phytoplankton specific growth rate (0.02–0.74 d^–1). Along the salinity gradient and towards the inner estuary, bacterio- and phytoplankton biomass and production increased steadily both in the warm and cold seasons. The maximum geographical increase observed in these variables was 12 times more for the bacterial community and 8 times more for the phytoplankton community. The warm to cold season ratios of the biological variables varied geographically and according to these variables. The increase at the warm season achieved its maximum in the biomass production, particularly in the marine zone and at high tide (20 and 112 times higher in bacterial and phytoplankton production, respectively). The seasonal variation in specific growth rate was most noticeable in phytoplankton, with seasonal ratios of 3–26. The bacterial community of the marine zone responded positively – generating seasonal ratios of 1–13 in bacterial specific growth rate – to the strong warm season increment in phytoplankton growth rate in this zone. In the brackish water zone where even during the warm season allochthonous carbon accounted for 41% (on average) of the bacterial carbon demand, the seasonal ratio of bacterial specific growth rate varied from about 1 to 2. During the warm season, an average of 21% of the primary production was potentially sufficient to support the whole bacterial production. During the cold months, however, the total primary production would be either required or even insufficient to support bacterial production. The estuary turned then into a mostly heterotrophic system. However, the calculated annual production of biomass by bacterio- and phytoplankton in the whole ecosystem showed that auto- and heterotrophic production was balanced in this estuary.     

Bottom-up regulation of bacterial growth in tropical phytotelm bromeliads

Evaluating the factors that regulate bacterial growth in natural ecosystems is a major goal of modern microbial ecology. Phytotelm bromeliads have been used as model ecosystems in aquatic ecology as they provide many independent replicates in a small area and often encompass a wide range of limnological conditions. However, as far as we know, there has been no attempt to evaluate the main regulatory factors of bacterial growth in these aquatic ecosystems. Here, we used field surveys to evaluate the main bottom-up factors that regulate bacterial growth in the accumulated water of tank bromeliads. Bacterial production, water temperature, water color, chlorophyll-a, and nutrient concentrations were determined for 147 different tank bromeliads in two different samplings. Bromeliad position and the season of sampling were also noted. Bacterial production was explained by ion ammonium concentration and water temperature, but the total variance explained was low (r ² = 0.104). Sampling period and bromeliad position were included in additional models that gave empirical support for predicting bacterial production. Bromeliad water tanks are extremely variable aquatic ecosystems in space (among bromeliads) and time (environmental conditions can change within hours), and it is well known that bacterial production responds rapidly to environmental change. Therefore, we concluded that several factors could independently regulate bacterial growth in phytotelm bromeliads depending on the characteristics of each bromeliad, such as location, amount of detritus, and ambient nutrient concentrations. A clear bottom-up limitation pattern of bacterial production in tropical phytotelm bromeliads was not found. Handling editor: Luigi Naselli-Flores     

A baseline process for the production,recovery, and purification of bacterial influenza vaccine candidates

The current commercial system for influenza vaccine production depends on the culture of virus in embryonated eggs—a strategy that is both costly and poorly scalable. Consequently, a sudden pandemic event with a demand for millions of vaccine doses in a short time could readily overwhelm the available world production capacity. In this communication, we present a process that uses Escherichia coli for scalable production of recombinant vaccine candidates against influenza. A monomeric and a dimeric fragment of hemagglutinin of the influenza A H1N1/2009 virus were successfully expressed in a BL21 (DE3) pLysS variety of C41 E. coli. We present results from batch processes where induction is made with isopropyl thiogalactoside and from fed‐batch experiments where expression is induced using lactose/glucose pulses. Concentrations in the range of 1.188–0.605 g/L of recombinant protein were observed in 2‐L stirred tank bioreactors. The genetic construct included an N‐terminal histidine tag sequence that facilitated recovery, purification, and proper refolding of the vaccine candidate by affinity chromatography in columns loaded with Ni⁺². The proteins produced by this strategy selectively and specifically recognizes antibodies from patients diagnosed as positive to influenza A H1N1/2009. Overall protein recovery yields between 30.0 and 34.7% were typically observed. Based on these yields, a production of 4.6 × 10³ doses L^?3 day^?1 is feasible. © 2013 American Institute of Chemical Engineers Biotechnol. Prog., 29:896–908, 2013     

Isolation and identification of equol-producing bacterial strains from cultures of pig faeces.

Transformation of daidzein to equol was compared during fermentation of three growth media inoculated with faeces from Erhualian piglets, but equol was produced from only one medium, M1. Two equol-producing strains (D1 and D2) were subsequently isolated using medium M1. Both strains were identified as Eubacterium sp., on the basis of morphological and physiological characteristics, and 16S rRNA gene sequence analysis showed that strains D1 and D2 were most closely related to previously characterized daidzein-metabolizing bacteria isolated from human faecal and rumen samples, respectively. This suggests that the ability to metabolize daidzein can be found among bacteria present within the mammalian intestine. The results provided the first account of conversion of daidzein directly to equol by bacterial species from farm animals. These strains may be of importance to the improvement of animal performance, and the use of medium M1 could provide a simple way to isolate bacterial strains capable of transforming daidzein into equol.     

Nutrient limitation of bacterial production in clear water Amazonian ecosystems

The aim of this research was to determine the main limiting nutrient (carbon, nitrogen or phosphorus) to bacterial production in different clear water Amazonian ecosystems during the high water period, when there is influence of the flooded land, mainly as sources of organic matter. Five stations were sampled in three clear water ecosystems: Trombetas River, Lake Batata and Caranã Stream. We estimated in each station the nutrient concentration, bacterial production and bacterial abundance. The experiment was set up with GF/F filtered water from all stations together with additions of glucose (400 M C), KNO₃ (15 M N) and KH₂PO₄ (5 M P) in accordance with each treatment (C, N, P ,CN, CP, NP, CNP and no amends). Bacterial production was estimated after 24 h of incubation. We observed that the values of bacterial production after additions of phosphate alone (P treatment) were 2- to 6-fold greater than the values measured in control flasks. Additions of nitrate (N treatment) and glucose alone (C treatment) had no effect on the bacterial production in four out of five ecosystems studied. However, additions of glucose with phosphate (CP treatment) strongly stimulated bacterial production in all ecosystems studied, including treatments with phosphate addition only. We conclude that phosphorus is the main limiting nutrient to bacterioplankton production in these clear water Amazonian ecosystems during the high water period. In addition, we conclude that, together with phosphorus, additions of glucose stimulated the bacterial production mainly due to the low quality of the carbon pool present in these ecosystems.     

Application of a two-dimensional disposable rocking bioreactor to bacterial cultivation for recombinant protein production

Disposable rocking bioreactors (RBs) are widely employed for cultivation of recombinant mammalian and insect cell lines, although the perception of inadequate mass transfer has prevented their application to bioprocesses based on microbial platforms. In this study, one-dimensional (1D) and two-dimensional (2D) RBs were assessed and compared with the conventional stirred tank reactor (STR) for recombinant therapeutic protein production in Escherichia coli. The comparison involved: (1) physical characterization of oxygen mass transfer efficiency and mixing intensity, (2) growth characteristics in batch cultivation, and (3) culture performance for the production of recombinant protein. Our results show that oxygen mass transfer was comparable between the 1D RB and STR at low working volume (WV), declining linearly with increasing WV, and was highest in the 2D RB for all tested WVs with the maximum mass transfer coefficient (k_La) at 3 L WV. Well mixing behavior was observed in all three systems for water and aqueous carboxymethylcellulose (CMC) solutions. Batch growth characteristics were similar in all bioreactor systems, although metabolite accumulation was significant in the 1D RB. Culture performance for the production of recombinant GST-hCD83ext (glutathione S-transferase-hCD83ext fusion protein) was similar in terms of soluble protein yield and inclusion body formation for all bioreactor systems.     

Inhibition of frog antimicrobial peptides by extracellular products of the bacterial pathogen Aeromonas hydrophila

Aims:  To determine whether the extracellular products (ECPs) from Aeromonas hydrophila , a frog bacterial pathogen that is resistant to skin antimicrobial peptides of three different frog species Xenopus laevis , Litoria aurea and Litoria raniformis , can modulate the activity of these peptides.
Methods and Results:  ECPs were collected from cultures of Klebsiella pneumoniae , a pathogen susceptible to skin antimicrobial peptides of all three tested frog species, and from cultures of Aer .  hydrophila . They were tested for protease activity and for inhibition of the antimicrobial activity of natural peptide mixtures and single peptides of all three frog species against Escherichia coli ATCC 25922. ECPs from cultures of Aer .  hydrophila grown for 16, 24 and 36 h showed protease activity and inhibited the antibacterial activity of all peptides against E .  coli ATCC 25922. In contrast, the ECPs from cultures of Kl .  pneumoniae neither had protease activity nor inhibited the activity of any peptides.
Conclusion:  The proteolytic ECPs of Aer .  hydrophila have the ability to inhibit the skin antimicrobial peptides of frogs.
Significance and Impact of the Study:  The results of this study provide new information on the association of ECPs with the resistance of Aer .  hydrophila to frog antimicrobial peptides.