A novel bacterial community index to assess stream ecological health

相似文献   

A comparison of bacteria and benthic invertebrates as indicators of ecological health in streams

1. We set out to evaluate the reliability of bacterial communities as an indicator of freshwater ecological health.
2. Samples of epilithic biofilm were taken over a 1-year period from four streams, each impacted by varying degrees of human modification. The bacteria within each sample were characterised using a whole community DNA fingerprinting technique (automated ribosomal intergenic spacer analysis). Spatial and temporal differences in community structure between samples were visualised using multi-dimensional scaling and quantified using permutational multivariate anova . Macrobenthic invertebrates, which are commonly used as indicators of stream ecological health, were also sampled for comparison.
3. Multivariate analysis revealed a clear gradient in macroinvertebrate community structure between sites exposed to increased human impact. Bacterial communities, however, could only distinguish the most impacted site from the remainder.
4. Additional research is required to increase the sensitivity of bacterial community analyses before endorsing their use as an indicator of freshwater ecological health.     

Louisiana waterthrushes (Seiurus motacilla) and habitat assessments as cost-effective indicators of instream biotic integrity

1. Benthic stream animals, in particular macroinvertebrates, are good indicators of water quality, but sampling can be laborious to obtain accurate indices of biotic integrity. Thus, tools for bioassessment that include measurements other than macroinvertebrates would be valuable additions to volunteer monitoring protocols. 2. We evaluated the usefulness of a stream‐dependent songbird, the Louisiana waterthrush (waterthrush, Seiurus motacilla) and the Environmental Protection Agency Visual Habitat Assessment (EPA VHA) as indicators of the macrobenthos community in headwater streams of the Georgia Piedmont, U.S.A. We sampled macrobenthos, surveyed waterthrushes and measured habitat characteristics along 39 headwater reaches across 17 catchments ranging from forested to heavily urbanised or grazed by cattle. 3. Of the indicators considered, waterthrush occupancy was best for predicting relative abundances of macrobenthic taxa, while the EPA VHA was best for predicting Ephemeroptera–Plecoptera–Trichoptera (EPT) richness. Individual components of EPA VHA scores were much less useful as indicators of EPT richness and % EPT when compared with the total score. Waterthrushes were found along streams with higher % EPT, a lower Family Biotic Index (FBI) values and greater macrobenthos biomass. 4. While macroinvertebrates remain one of the most direct indicators of stream water quality, stream bird surveys and reach‐scale habitat assessments can serve as cost‐effective indicators of benthic macroinvertebrate communities. Using stream‐dependent birds as an early warning signal for degradation of stream biotic integrity could improve the efficacy of catchment monitoring programmes in detecting and identifying perturbations within the catchment.     

Environmental effects on biofilm bacterial communities: a comparison of natural and anthropogenic factors in New Zealand streams

相似文献   

Macroinvertebrate community loss as a result of headwater stream acidification in the Vosges Mountains (N-E France)

The relationships between water chemistry and aquatic macroinvertebrate communities of 41 headwater streams were studied in the Vosges Mountains (N-E of France) in an attempt to assess the impact of acidification on macroinvertebrate diversity. The taxa richness of macroinvertebrates decreased drastically in headwater streams which were characterized by low pH, low calcium and high aluminum content. All taxonomic groups were affected, but Molluscans, Crustaceans and Ephemeroptera disappeared totally from strongly acidified streams. Simple indices based on taxa richness such as the coefficient of community loss may provide accurate tools to quickly assess the impact of acidification on macroinvertebrate communities. Despite the reduction of atmospheric SO₂ emissions, acidification of freshwater in the Vosges Mountains continues to affect streams which were believed in the past to constitute refuge biotopes for numerous species. Consequently, acidification represents a real threat for numerous invertebrates. This study arises the question of the evolution in the future of headwater stream ecosystems. Urgent decisions and interventions are required to preserve non-acidified streams and to restore impacted ecosystems while awaiting spontaneous recovery.     

Riverine invertebrate assemblages are degraded more by catchment urbanisation than by riparian deforestation

1. Restoration of riparian forests has been promoted as a means of mitigating urban impacts on stream ecosystems. However, conventional urban stormwater drainage may diminish the beneficial effect of riparian forests.
2. The relative effects of riparian deforestation and catchment urbanisation on stream ecosystems have rarely been discriminated because urban land use and riparian degradation usually covary. However, land use at three scales (channel canopy cover along a 100-m site, riparian forest cover within 200 m of the channel for 1 km upstream, and catchment imperviousness) covaried only weakly along the lowland Yarra River, Victoria, Australia.
3. We tested the extent to which each land use measure explained macroinvertebrate assemblage composition on woody debris and in the sediments of pools or runs in the mainstem Yarra River in autumn and spring 1998.
4. Assemblage composition in both habitats and in both seasons was most strongly correlated with proportion of catchment covered by impervious surfaces. Sites with higher imperviousness had fewer sensitive taxa (those having a strong positive influence on indicators of biological integrity) and more taxa typical of degraded urban streams. Sensitive taxa rarely occurred in sites with >4% total imperviousness. However, within sites of similar imperviousness, those with more riparian forest cover had more dipteran taxa. Channel canopy cover did not explain assemblage composition strongly.
5. Riparian forest cover may influence richness of some macroinvertebrate taxa, but catchment urbanisation probably has a stronger effect on sensitive taxa. In catchments with even a small amount of conventionally drained urban land, riparian revegetation is unlikely to have an effect on indicators of stream biological integrity. Reducing the impacts of catchment urbanisation through dispersed, low-impact drainage schemes is likely to be more effective.     

Influences of catchment and corridor imperviousness on urban stream macroinvertebrate communities at multiple spatial scales

Resolving land cover hierarchy relationships in urban settings is important for defining the scale and type of management required to enhance stream health. We investigated associations between macroinvertebrate assemblages in urban streams of Hamilton, New Zealand, and environmental variables measured at multiple spatial scales comprising (i) local-scale physicochemical conditions, (ii) impervious area in multiple stream corridor widths (30, 50 and 100 m) along segments (sections of stream between tributary nodes) and for entire upstream networks, and (iii) total impervious area in stream segment sub-catchments and upstream catchments. Imperviousness was higher for stream segment sub-catchments than for entire catchments because of the agricultural headwaters of some urban streams. Imperviousness declined as corridor width declined at both segment and catchment scales reflecting the vegetated cover along most urban stream gullies. Upstream catchment imperviousness was strongly and inversely correlated with dissolved organic carbon concentration, whereas segment and upstream corridor scales were correlated with water temperature and pH. Corridor imperviousness appeared to be a stronger predictor than catchment imperviousness of Ephemeroptera, Plecoptera and Trichoptera taxa richness and the Quantitative Urban Community Index specifically developed to assess impacts of urbanisation. In contrast, imperviousness at all measured scales added only marginal improvement in assemblage-based models over that provided by the local-scale physicochemical variables of reach width, habitat quality, macrophyte cover, pH and dissolved oxygen concentration. These findings infer variable scales of influence affecting macroinvertebrate communities in urban streams and suggest that it may be important to consider local and corridor factors when determining mechanisms of urbanisation impacts and potential management options.     

Multi-scale mechanistic indicators of Midwestern USA stream macroinvertebrates

We developed ecological indicators of stream macroinvertebrates in two regions of the Midwestern USA dominated by row-crop agriculture. Indicators were identified in a hierarchical fashion. Reach-scale variables related to macroinvertebrate attributes were first identified, and then catchment-scale variables related to those reach-scale variables were identified. Reach-scale indicators common to both regions were % fine sediments, number of habitats, and width:depth ratio. SD of elevation and % commercial land use were selected as catchment-scale indicators in both regions. Our analyses revealed a multi-scale mechanistic relationship between macroinvertebrate attributes associated with degraded conditions (i.e., fewer taxa of Plecoptera and Trichoptera, and a higher proportion of chironomids, burrowers, and depositional taxa) and % fine sediments in stream reaches, which, in turn, was negatively related to catchment characteristics (i.e., SD of elevation) in one region. Understanding how natural variables such as topography influence channel shape and within-channel structure can help guide management options and expectations for different regions. We suggest that developing multi-scale indicators in a mechanistic fashion will be more effective than developing indicators at only one spatial scale for protecting and restoring stream structure and function.     

Relationships between land use, spatial scale and stream macroinvertebrate communities

1. The structure of lotic macroinvertebrate communities may be strongly influenced by land‐use practices within catchments. However, the relative magnitude of influence on the benthos may depend upon the spatial arrangement of different land uses in the catchment. 2. We examined the influence of land‐cover patterns on in‐stream physico‐chemical features and macroinvertebrate assemblages in nine southern Appalachian headwater basins characterized by a mixture of land‐use practices. Using a geographical information system (GIS)/remote sensing approach, we quantified land‐cover at five spatial scales; the entire catchment, the riparian corridor, and three riparian ‘sub‐corridors’ extending 200, 1000 and 2000 m upstream of sampling reaches. 3. Stream water chemistry was generally related to features at the catchment scale. Conversely, stream temperature and substratum characteristics were strongly influenced by land‐cover patterns at the riparian corridor and sub‐corridor scales. 4. Macroinvertebrate assemblage structure was quantified using the slope of rank‐abundance plots, and further described using diversity and evenness indices. Taxon richness ranged from 24 to 54 among sites, and the analysis of rank‐abundance curves defined three distinct groups with high, medium and low diversity. In general, other macroinvertebrate indices were in accord with rank‐abundance groups, with richness and evenness decreasing among sites with maximum stream temperature. 5. Macroinvertebrate indices were most closely related to land‐cover patterns evaluated at the 200 m sub‐corridor scale, suggesting that local, streamside development effectively alters assemblage structure. 6. Results suggest that differences in macroinvertebrate assemblage structure can be explained by land‐cover patterns when appropriate spatial scales are employed. In addition, the influence of riparian forest patches on in‐stream habitat features (e.g. the thermal regime) may be critical to the distribution of many taxa in headwater streams draining catchments with mixed land‐use practices.     

Relationships between stream macroinvertebrate communities and new flood‐based indices of glacial influence

相似文献   

Impacts of urbanization on stream habitats and macroinvertebrate communities in the tributaries of Qiangtang River,China

The impacts of watershed urbanization on streams have been studied worldwide, but are rare in China. We examined relationships among watershed land uses and stream physicochemical and biological attributes, impacts of urbanization on overall stream conditions, and the response pattern of macroinvertebrate assemblage metrics to the percent of impervious area (PIA) of watersheds in the middle section of the Qiantang River, Zhejiang Province, China. Environmental variables and benthic macroinvertebrates of 60 stream sites with varied levels of watershed urban land use were sampled in April, 2010. Spearman correlation analysis showed watershed urbanization levels significantly correlated with increased stream depth, width, and values of conductivity, total nitrogen, ammonia, phosphate, calcium, magnesium, and chemical oxygen demand for the study streams. There was significant difference in total taxa richness, Empheroptera, Plecoptera, and Trichoptera (EPT) taxa richness, and Diptera taxa richness, percentages of individual abundances of EPT, Chironomidae, shredders, filterers, and scrapers, and Shannon–Wiener diversity index between reference streams and urban impacted streams. In contrast, percentages of individual abundances for collectors, oligochaeta, and tolerant taxa, and biotic index were significantly higher in urban impacted than reference streams. All the above metrics were significantly correlated with PIA. The response patterns of total taxa richness, EPT taxa richness, and Shannon–Wiener diversity index followed a drastic decrease at thresholds of 3.6, 3.7, and 5.5% of PIA, respectively. Our findings indicate that stream benthic macroinvertebrate metrics are effective indicators of impacts of watershed urban development, and the PIA-imperviousness thresholds we identified could potentially be used for setting benchmarks for watershed development planning and for prioritizing high valued stream systems for protection and rehabilitation.     

Fish richness and species-habitat relationships in two coastal streams of French Guiana, South America

We examined the factors controlling fish species richness and taxa-habitat relationships in the Malmanoury and Karouabo coastal streams in French Guiana between the short and long rainy seasons. The aims were to evaluate the environmental factors that describe species richness on different scales and to define the ecological requirements of fish taxa in the two streams at that period of the year. We sampled ten regularly spaced freshwater sites in each stream with rotenone. We caught a total of 7725 individuals representing 52 taxa from 21 families and 6 orders. More taxa were caught in the Malmanoury (n=46) than in the Karouabo stream (n=37). These values augmented by the number of fish taxa caught only by gill nets in a parallel survey fitted very well to a log-log model of fish richness versus catchment area in Guianese rivers. Most of the fish taxa encountered in the Malmanoury and Karouabo streams were of freshwater origin and nearly all the fish species caught in these two small coastal streams were also found in the nearby Sinnamary River with the exceptions of the cichlid Heros severus and the characid Crenuchus spirulus. Moreover, no significant relationship was found between a size-independent estimate of fish richness and distance from the Ocean. Thus, despite their coastal position, the Malmanoury and Karouabo streams contained fish assemblages with strong continental affinities. At a local scale, independently of site size, those with relatively more habitat types harbored a relatively greater number of fish taxa. Canopy cover, water conductivity and bank length were the most important environmental variables for fish assemblage composition at that period of the year. Oxygen and vegetation participated also in defining fish habitat requirements but to a lesser extent. This revised version was published online in July 2006 with corrections to the Cover Date.     

Relationship between Riparian Vegetation and Stream Benthic Communities at Three Spatial Scales

We examined the influence of riparian vegetation on macroinvertebrate community structure in streams of the Upper Thames River watershed in southwestern Ontario. Thirty-three μ-basins (129–1458 ha) were used to identify land cover variables that influenced stream macroinvertebrates. Micro-basins represented the entire drainage area of study streams and were similar in stream order (first, second) and land cover (agricultural or forest; no urban). We described the structure and composition of riparian vegetation and benthic macroinvertebrate communities at the outflow reach. The nature of the land cover was quantified for the stream network buffer (30 m) and the whole μ-basin. The objective of this study was to measure the magnitude and nature of the relationship between the riparian vegetation and benthic macroinvertebrate community at the outflow reach, stream network buffer, and whole μ-basin scales. Taxon richness (including total number of Ephemeroptera, Plecoptera, and Trichoptera taxa) and Simpson’s diversity of the macroinvertebrate community all increased with increased tree cover in the riparian zone at the outflow reach scale. Simpson’s equitability was lower with greater agricultural land cover in the stream network buffer. No relationship between the macroinvertebrate community and land cover was found at the whole μ-basin scale. Analysis of the influence of land cover on stream communities within a spatial hierarchy is important for understanding the interactions of stream ecosystems with their adjacent landscapes.     

Stream macroinvertebrate communities in a conifer‐afforested catchment in Ireland: relationships to physico‐chemical and biotic factors

1. The influence of land use and physico-chemical factors on stream macroinvertebrates was analysed at fifteen sites over a 2-year period in a single conifer-afforested catchment in Ireland, in an area subject to very low levels of atmospheric pollution. 2. Macroinvertebrate assemblages were classified using two-way indicator species analysis into five major groupings that were related to distance from headwaters and land use. Trends in macroinvertebrate community composition were related to changes in physico-chemical and biotic characteristics of the river and its tributaries using canonical correspondence analysis. 3. Local ecological factors (e.g. acid water, moss, shading or agricultural runoff), longitudinal trends in stream physico-chemistry (related to distance from headwaters, geology and land use) and season (related to life history patterns of the invertebrates) were the explanatory variables of spatio-temporal patterns in macroinvertebrate community composition in the catchment. 4. Spatial variation in macroinvertebrate density, taxon richness, diversity and evenness was investigated in relation to environmental characteristics of the study sites using Spearman’s rank correlation, principal components analysis and stepwise multiple regression. Invertebrate density and richness increased with distance from the headwater and associated increases in pH, water hardness and nutrients. Macroinvertebrate density and richness also increased with increasing moss weight. Invertebrate diversity and evenness increased with shading of the channel. 5. The increase in macroinvertebrate density and richness and changes in community composition were particularly marked over a relatively short (1.2 km) distance in one tributary, and were concurrent with a rapid increase in stream pH of 1.7 units. 6. Although macroinvertebrate communities at conifer-afforested sites were not impoverished in the same way as those in some other parts of Europe, they differed from the communities found above and below the plantation. This appeared to be owing to the primary importance of local ecological factors and the effect that the longitudinal position of these forest sites within the river system had on their physico-chemical and biotic nature.     

Flow permanence and macroinvertebrate community diversity within groundwater dominated headwater streams and springs

The response of aquatic macroinvertebrate communities to flow permanence within limestone springs and headwater streams was examined across the English Peak District. At the regional scale, macroinvertebrate communities of perennial and intermittent springs displayed significant differences in the number of taxa, macroinvertebrate community abundance, diversity indices (Shannon and Simpson indices) and the Berger–Parker dominance index at intermediate discharge. However, no significant difference was recorded between intermittent and perennial sites at high discharge or when all sampling occasions were pooled. At the catchment scale, the number of taxa, community abundance and Bray–Curtis similarity coefficients within the River Lathkill differed significantly between intermittent springs and other habitats. At both the regional and catchment scale the macroinvertebrate communities of intermittent springs were characterised by a small number of taxa displaying life cycle adaptations to intermittent aquatic habitats, particularly Trichoptera.     

Freshwater diatom and macroinvertebrate diversity of coastal permanent ponds along a gradient of human impact in a Mediterranean eco-region

Mediterranean coastal areas are characterised by heavily transformed landscapes and an ever-increasing number of ponds are subjected to strong alterations. Although benthic diatoms and macroinvertebrates are widely used as indicators in freshwater ecosystems, little is still known about the diatom communities of lowland freshwater ponds in the Mediterranean region, and, furthermore, there are few macroinvertebrate-based methods to assess their ecological quality, especially in Italy. This article undertakes an analysis of benthic diatom and macroinvertebrate communities of permanent freshwater ponds, selected along a gradient of anthropogenic pressures, to identify community indicators (taxa and/or metrics) useful to evaluate the effect of human impacts. A series of 21 ponds were sampled along Tyrrhenian coast in central Italy. Five of these ponds, in a good conservations status and surrounded by woodland were selected as ‘reference sites’ for macroinvertebrates and epipelic diatoms. The remaining sixteen ponds were located in an agricultural landscape subject to different levels of human impact. The total number of macroinvertebrate taxa found in each pond was significantly higher in reference sites than in both the intermediate and heavily degraded ones, whereas the diatom species richness did not result in a good community variable to evaluate the pond ecological quality. The analysis revealed a substantial difference among the compositions of diatom communities between reference ponds and degraded ponds. The former were characterised by the presence of several species belonging to genera, such as Pinnularia sp., Eunotia sp., Stauroneis sp., Neidium sp., all of which were mostly absent from degraded ponds. Furthermore, the taxonomic richnesses of some macroinvetebrate groups (Odonata, Ephemeroptera, Trichoptera, Coleoptera), and taxa composition attributes of macroinvertebrate communities (total abundance, percentages of top three dominant taxa, percentages of Pleidae, Ancylidae, Hirudinea, Hydracarina) significantly correlated with variables linked with anthropogenic pressures. The results of the investigation suggested that diatoms tended more to reflect water chemistry through changes in community structure, whereas invertebrates responded to physical habitat changes primarily through changes in taxonomic richness. The methodologies developed for the analysis of freshwater benthic diatom and macroinvertebrate communities may have a considerable potential as a tool for assessing the ecological status of this type of water body, complying with the European Union Water Framework Directive 2000/60/EC. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Guest editors: B. Oertli, R. Cereghino, A. Hull & R. Miracle Pond Conservation: From Science to Practice. 3rd Conference of the European Pond Conservation Network, Valencia, Spain, 14–16 May 2008     

Invaders are not a random selection of species

We assembled information on 119 species of freshwater macroinvertebrate invaders in North America and Europe, and compared them to all native freshwater species in North America and Europe. We tested whether the invaders were a random or selected group among taxa (phylum or class), water quality requirements, and feeding habit. We found that freshwater macroinvertebrate invaders are not a random selection of species, and are over-represented by molluscs and crustaceans, while taxa richness of native communities are dominated by insects. Over 35% of native species of aquatic invertebrates in North America are only able to live in areas with excellent or very good water quality, and are intolerant of organic pollution. In contrast, all invaders are tolerant of at least moderate amounts of organic pollution. There was a significant difference in the distribution of feeding habits between native species and invaders: collector-filterers (including suspension feeders) were 2.5–3 times more abundant, and predators were 3–4 times less abundant among invaders than among native invertebrates. The ongoing spread of exotic species affects the biodiversity of selected taxa, shifts communities toward greater tolerance of organic pollution and increases the numbers of suspension feeders, thereby enhancing benthic pelagic coupling in waterbodies with high densities of invaders. Because these processes are very similar in Europe and North America, we suggest that the observed patterns may have a common global effect.     

The influences of climatic variation and vegetation on stream biota: lessons from the Big Dry in southeastern Australia

Aquatic biodiversity faces increasing threats from climate change, escalating exploitation of water and land use intensification. Loss of vegetation in catchments (= watersheds) has been identified as a substantial problem for many river basins, and there is an urgent need to better understand how climate change may interact with changes in catchment vegetation to influence the ecological condition of freshwater ecosystems. We used 20 years of biological monitoring data from Victoria, southeastern Australia, to explore the influences of catchment vegetation and climate on stream macroinvertebrate assemblages. Southeastern Australia experienced a severe drought from 1997 to 2009, with reductions of stream flows >50% in some areas. The prolonged drying substantially altered macroinvertebrate assemblages, with reduced prevalence of many flow‐dependent taxa and increased prevalence of taxa that are tolerant of low‐flow conditions and poor water quality. Stream condition, as assessed by several commonly used macroinvertebrate indices, was consistently better in reaches with extensive native tree cover in upstream catchments. Prolonged drought apparently caused similar absolute declines in macroinvertebrate condition indices regardless of vegetation cover, but streams with intact catchment and riparian vegetation started in better condition and remained so throughout the drought. The largest positive effects of catchment tree cover on both water quality and macroinvertebrate assemblages occurred above a threshold of ca. 60% areal tree cover in upstream catchments and in higher rainfall areas. Riparian tree cover also had positive effects on macroinvertebrate assemblages, especially in warmer catchments. Our results suggest that the benefits of extensive tree cover via improved water quality and in‐channel habitat persist during drought and show the potential for vegetation management to reduce negative impacts of climatic extremes for aquatic ecosystems.     

Beavers alter stream macroinvertebrate communities in north-eastern Utah

1. Understanding changes in macroinvertebrate communities is important because they play a large role in stream ecosystem functioning, and they are an important food resource for fish. Beaver-induced changes to stream morphology could alter macroinvertebrate communities, which in turn could affect food webs and ecosystem function. However, studies investigating the effects of North American beaver activities on macroinvertebrates are rare in the inter-mountain west, an area with high potential for beaver-assisted restoration.
2. The aim of this study was to quantify differences in the macroinvertebrate community between unaltered segments of streams and within beaver ponds in north-eastern Utah, U.S.A. We assessed macroinvertebrate species richness, biomass, density, functional feeding group composition, mobility group composition, and macroinvertebrate habitat characteristics to test the hypothesis that macroinvertebrate communities will differ among habitat types (undammed stream segments and beaver ponds) in beaver-occupied streams.
3. Beaver pond communities significantly differed from lotic reach communities in many ways. Beaver ponds were less diverse with 25% fewer species. Although there was variability among streams, in general, beaver ponds had 75% fewer individuals and 90% lower total macroinvertebrate biomass compared to lotic reaches.
4. Regarding functional feeding groups, beaver ponds contained more engulfers, while lotic reaches contained more scrapers, filterers, and gatherers. For mobility groups, beaver ponds had more sprawlers, while lotic reaches had more clingers. Swimmers were also more prevalent in lotic reaches, although this is probably due to the abundance of Baetis within lotic reaches. More beaver pond taxa were classified as lentic-dwelling insects, while more lotic reach taxa were categorised as preferring lotic habitats.
5. The creation of ponds by beavers fundamentally altered the macroinvertebrate community in north-eastern Utah streams. Such changes to stream macroinvertebrate communities suggest that recolonisation of beavers across North America may be altering stream functioning and food webs. Our study highlights the need to further investigate the effects of beaver recolonisation on stream communities.