The ecological role of killer yeasts in natural communities of yeasts

The killer phenomenon of yeasts was investigated in naturally occurring yeast communities. Yeast species from communities associated with the decaying stems and fruits of cactus and the slime fluxes of trees were studied for production of killer toxins and sensitivity to killer toxins produced by other yeasts. Yeasts found in decaying fruits showed the highest incidence of killing activity (30/112), while yeasts isolated from cactus necroses and tree fluxes showed lower activity (70/699 and 11/140, respectively). Cross-reaction studies indicated that few killer-sensitive interactions occur within the same habitat at a particular time and locality, but that killer-sensitive reactions occur more frequently among yeasts from different localities and habitats. The conditions that should be optimal for killer activity were found in fruits and young rots of Opuntia cladodes where the pH is low. The fruit habitat appears to favor the establishment of killer species. Killer toxin may affect the natural distribution of the killer yeast Pichia kluyveri and the sensitive yeast Cryptococcus cereanus. Their distributions indicate that the toxin produced by P. kluyveri limits the occurrence of Cr. cereanus in fruit and Opuntia pads. In general most communities have only one killer species. Sensitive strains are more widespread than killer strains and few species appear to be immune to all toxins. Genetic study of the killer yeast P. kluyveri indicates that the mode of inheritance of killer toxin production is nuclear and not cytoplasmic as is found in Saccharomyces cerevisiae and Kluyveromyces lactis.     

Physical mapping and RFLP analysis of mtDNAs from the ascosporogenous yeasts: Saccharomyces exiguus, S. kluyveri and Hansenula wingei.

Mitochondrial DNAs from the ascosporogenous yeasts S. exiguus, S. kluyveri and H. wingei were prepared by a new rapid method without CsCl isopycnic centrifugation. The mtDNA RFLPs were identified and clearly distinguished each species from the other. The physical maps were constructed by single and double digestion with nine restriction endonucleases. The location of rRNA genes was assigned to the maps by Southern hybridization with synthetic consensus probes. The genome sizes of these mtDNAs were estimated to be 45 kb for S. exiguus, 54 kb for S. kluyveri and 27 kb for H. wingei. The mtDNA RFLP analysis indicates a phylogenetic relationship among these yeasts. This indicates that S. cerevisiae is closer to H. wingei than S. kluyveri. However, the derived phylogenetic tree is completely consistent with that which was previously constructed on amino acid replacement in mating pheromones and electrophoretic karyotypes (Yoshida et al., 1989).     

Glutathione and hydrogen sulfide are required for sulfur-mediated mitigation of Cr(VI) toxicity in tomato,pea and brinjal seedlings

In plants, investigation on heavy metal toxicity and its mitigation by nutrient elements have gained much attention. However, mechanism(s) associated with nutrients-mediated mitigation of metal toxicity remain elusive. In this study, we have investigated the role and interrelation of glutathione (GSH) and hydrogen sulfide (H₂S) in the regulation of hexavalent chromium [Cr(VI)] toxicity in tomato (Solanum lycopersicum), pea (Pisum sativum) and brinjal (Solanum melongena) seedlings, supplemented with additional sulfur (S). The results show that Cr(VI) significantly reduced growth, total chlorophyll and photosynthetic quantum yield of tomato, pea and brinjal seedlings which was accompanied by enhanced intracellular accumulation of Cr(VI) in roots. Moreover, Cr(VI) enhanced the generation of reactive oxygen species in the studied vegetables, while antioxidant defense system exhibited differential responses. However, additional supply of S alleviated Cr(VI) toxicity. Interestingly, addition of l-buthionine sulfoximine (BSO, a glutathione biosynthesis inhibitor) further increased Cr(VI) toxicity even in the presence of additional S but GSH addition reverses the effect of BSO. Under similar condition, endogenous H₂S, l-cysteine desulfhydrase (DES) activity and cysteine content did not significantly differ when compared to controls. Hydroxylamine (HA, an inhibitor of DES) also increased Cr(VI) toxicity even in the presence of additional S but sodium hydrosulfide (NaHS, an H₂S donor) reverses the effect of HA. Moreover, Cr(VI) toxicity amelioration by NaHS was reversed by the addition of hypotaurine (HT, an H₂S scavenger). Taken together, the results show that GSH which might be derived from supplied S is involved in the mitigation of Cr(VI) toxicity in which H₂S signaling preceded GSH biosynthesis.     

Occurrence and diversity of yeasts involved in fermentation of West African cocoa beans

Samples of cocoa beans were taken on two separate occasions during heap and tray fermentations in Ghana, West Africa. In total 496 yeast isolates were identified by conventional microbiological analyses and by amplification of their ITS1-5.8S rDNA-ITS2 regions. For important species the identifications were confirmed by sequencing of the D1/D2 domain of the 5' end of the large subunit (26S) rDNA. Assimilations of organic acids and other carbon compounds were conducted. For dominant yeasts intraspecies variations were examined by determination of chromosome length polymorphism (CLP) using pulsed-field gel electrophoresis. For the heap fermentations maximum yeast cell counts of 9.1 x 10(7) were reached, whereas maximum yeast counts of 6.0 x 10(6) were reached for the tray fermentations. Candida krusei was found to be the dominant species during heap fermentation, followed by P. membranifaciens, P. kluyveri, Hanseniaspora guilliermondii and Trichosporon asahii, whereas Saccharomyces cerevisiae and P. membranifaciens were found to be the dominant species during tray fermentation followed by low numbers of C. krusei, P. kluyveri, H. guilliermondii and some yeast species of minor importance. For isolates within all dominant species CLP was evident, indicating that several different strains are involved in the fermentations. Isolates of C. krusei, P. membranifaciens, H. guilliermondii, T. asahii and Rhodotorula glutinis could be found on the surface of the cocoa pods and in some cases on the production equipment, whereas the origin of e.g. S. cerevisiae was not indicated by the results obtained. In conclusion, the results obtained show that fermentation of cocoa beans is a very inhomogeneous process with great variations in both yeast counts and species composition. The variations seem to depend especially on the processing procedure, but also the season and the post-harvest storage are likely to influence the yeast counts and the species composition.     

Synergism of Entomopathogenic Nematodes and Imidacloprid against White Grubs: Greenhouse and Field Evaluation

In previous greenhouse studies, the insecticide imidacloprid and the entomopathogenic nematode Heterorhabditis bacteriophora Poinar interacted synergistically against third instars of the masked chafers Cyclocephala hirta LeConte and C. pasadenae Casey (Coleoptera: Scarabaeidae). We tested this interaction for two additional nematode species and three additional scarab species under field conditions. In greenhouse tests, H. bacteriophora and Steinernema glaseri (Steiner) interacted synergistically against third instars of the Japanese beetle, Popillia japonica Newman, the oriental beetle, Exomala orientalis Waterhouse, and the masked chafers Cyclocephala borealis Arrow, C. pasadenae, and C. hirta. The degree of interaction varied with nematode species. The strongest synergism occurred between imidacloprid and S. glaseri. Synergism between imidacloprid and H. bacteriophora was weaker and the interaction was not always significant. Combinations of imidacloprid and S. kushidai Mamiya only resulted in additive mortality. The synergistic interaction was also observed in field trials but the results were more variable than those under greenhouse conditions. The combination of nematodes and imidacloprid could be used for curative treatments of white grub infestations, especially against scarab species that are less susceptible to nematodes and/or imidacloprid. This combination has a low environmental impact and high compatibility with natural biological control of turfgrass insects. The possible roles of these combinations in augmentative control approaches are discussed.     

The taxonomy of yeasts isolated fromDrosophila in the Yosemite region of California

Summary A survey was made of the yeasts occurring in the intestinal tract of wild species ofDrosophila occurring in the Yosemite Region of California. Two hundred and forty one yeasts, representing 42 species and varieties, were identified. Each isolate was obtained from a different fly. Almost half of the isolates belong toSaccharomyces. The most common species in this genus wereS. montanus (36 isolates),S. veronae (30 isolates),S. cerevisiae var.tetrasporus (22 isolates) andS. drosophilarum (13 isolates). Further species are listed in Table 1.Zygosaccharomyces fermentati Naganishi was shown to be a distinct species and not a synonym ofS. cerevisiae. In order to avoid confusion with another yeast of the same name, it has been proposed to change the nameZ. fermentati toS. montanus Naganishi. Two new species ofSaccharomyces were described,S. wickerhamii andS. kluyveri. S. mangini var.tetrasporus has been renamedS. cerevisiae var.tetrasporus. A non-cellobiose attacking strain ofS. drosophilarum has been designated tentativelyS. drosophilarum var.acellobiosa. A new species of the genusPichia was described asP. xylosa. Saccharomyces pastori andSaccharomyces pini were transferred to the genusPichia on the basis of arguments given in the preceding paper. A new species ofTrichosporon was described asTr. aculeatum on the basis of the presence of characteristic needlelike cells. Common species besides those mentioned inSaccharomyces wereHansenula angusta (19),Kloeckera apiculata (15),Kl. magna (13), andTorulopsis stellata (10). Other genera represented wereHanseniaspora, Cryptococus, Rhodotorula, Candida andOospora. Evidence was obtained that many species of imperfect genera consist of distinctly different physiological types.     

刺梨自然发酵过程中非酿酒酵母多样性分析

【目的】分析刺梨果实自然发酵过程中非酿酒酵母菌群特征,为筛选优质刺梨非酿酒酵母提供参考。【方法】基于Illumina MiSeq高通量测序技术和WL营养琼脂鉴定培养基纯种分离技术,分析刺梨果实自然发酵1 d (F1)、3 d (F3)、5 d (F5)和15 d (F15) 4个阶段及YPD培养基富集培养样本中非酿酒酵母种群组成和多样性。【结果】高通量测序分析结果共获得182个OTUs (operational taxonomic units,OTUs),归属于81个属107个种;物种多样性分析结果表明,刺梨果实自然发酵前期,优势非酿酒酵母为汉逊酵母(Hanseniasporasp.)和伯顿丝孢毕赤酵母(Hyphopichiaburtonii),二者在样本F1中分别占42.59%和26.85%;随着自然发酵的不断进行,二者的比例逐渐降低,在第15天(F15),Hanseniaspora sp.和H. burtonii比例降低至7.73%和0.52%。相反,Pichia sporocuriosa和未培养的酵母,随着自然发酵不断进行所占比例逐渐增大,分别由F1中的0.23%和0.33%增至F15中的37.26%和32.62%。此外,采用WL营养琼脂鉴定培养基纯种分离和鉴定技术,从刺梨上分离到Hanseniasporasp.、H.burtonii、克鲁维毕赤酵母(Pichia kluyveri)、P. sporocuriosa和异常威克汉姆酵母(Wickerhamomyces anomalus) 5种类型的可培养非酿酒酵母。【结论】刺梨果实上存在着丰富的非酿酒酵母菌资源,研究刺梨自然发酵过程中非酿酒酵母多样性,为酵母资源开发和利用奠定基础。     

Electrophoretic karyotyping as a taxonomic tool in the genusSaccharomyces

Summary The electrophoretic karyotypes of strains of the ten species of the yeast genusSaccharomyces (sensu Vaughan-Martini & Martini 1992) were determined by the CHEF (contour-clamped homogeneous electric field) system of pulsed field gel electrophoresis. The number of bands was found to vary from 6 to 17 and the calculated molecular weights of haploid genomes ranged from 7.9 to 14.6 Mbp. The type strains ofS. exiguus and the four species of theSaccharomyces sensu stricto complex (S. bayanus, S. cerevisiae, S. paradoxus andS. pastorianus) have genomes comprised of chromosomes of all three size classes: light (< 500 kb), medium (500–1000 kb) and heavy (> 1,000 kb).Saccharomyces kluyveri DNA has only heavy bands, while the remaining species exhibit medium and heavy chromosomes. When more than one strain of each species was examined, it was seen that while the speciesS. bayanus, S. castellii, S. cerevisiae, S. kluyveri, S. paradoxus andS. pastorianus showed uniform karyotypes,S. dairensis, S. exiguus, S. servazzii andS. unisporus comprise heterogeneous taxa.     

Mating Pheromones of Saccharomyces kluyveri: Pheromone Interactions Between Saccharomyces kluyveri and Saccharomyces cerevisiae

Saccharomyces kluyveri is a heterothallic yeast with two allelic mating types denoted as a-k and alpha-k by analogy with Saccharomyces cerevisiae and from the work described here. S. kluyveri produces mating pheromones analogous to those of S. cerevisiae, but which appear to have different specificity. S. kluyveri thus differs from S. cerevisiae, Hansenula wingei, and Schizosaccharomyces pombe in that it exhibits both strong constitutive agglutination and mating pheromones. alpha-k cells produce a pheromone ("alpha-k-factor") which causes a-k cells to arrest in the G1 phase of the cell cycle and to undergo a morphological change. After a period of time dependent on the concentration of alpha-k-factor, cells exposed to the factor resume cell division. alpha-k-factor has no effect on a-k/alpha-k diploids or on alpha-k cells, but at high concentration does induce G1 arrest of S. cerevisiaea cells (a-c). a-k cells produce a pheromone ("a-k-factor") which causes alpha-k cells to exhibit a morphological change. In addition, a-k cells exhibit the Bar phenotype with respect to alpha-k-factor. Partially purified preparations of S. cerevisiae alpha-factor are more active in inducing G1 arrest of a-k cells than of a-c cells. A more purified preparation of alpha-c-factor is less active against a-k cells than a-c cells, suggesting that an additional factor (KRE, kluyveri response enhancer) may be lost during purification. Attempts to mate S. kluyveri and S. cerevisiae cells by prototroph selection and by cell-to-cell mating have been unsuccessful with all combinations of mating types. Thus, S. cerevisiae and S. kluyveri are incompatible for mating even though their pheromones exhibit some physiological cross-reaction.     

渤海海水中酵母菌的种类

本文报道了渤海海水中酵母菌种类的调查结果,从31个站位中,共分离鉴定了228株酵母菌,这些酵母菌分别属于8属40种:红酵母属(Rhodotorula)5个种,隐球酵母属(Cryptococcus)8个种,德巴利酵母属(Debaryomyces)2个种,毕赤酵母属(Pichia)8个种,酵母属(Saccharomyces)2个种,短梗霉属(Aureobasidium)1个种,球孢酵母属(Torulaspora)1个种,假丝酵母属(candida)13个种。40个种中,有13种是中国新记录,即:黑隐球酵母(Cryptococcus ater),大型隐球酵母(Cr.magnus),多型德巴利酵母(Debaryomyces polymorphus),克鲁维酵母(Saccharomyces kluyveri),伯顿毕赤酵母(Pichia burtonii),卡森毕赤酵母(P.carsonii),埃切毕赤酵母(P.etchellsii),季也蒙毕赤酵母(P.guilliermondii),海梅尔毕赤酵母(P.heimii),嗜土毕赤酵母(P.philogaea),奥默毕赤酵母(P.ohmeri),棘胫小蠹毕赤酵母(P.scolyti),和戴尔有孢圆酵母(Torulaspora delbrueckii),在这13种中,除埃切毕赤酵母和奥默毕赤酵母外,其余11种在海水里也是首次报道。     

Molecular identification of Tetrahymena species

Mitochondrial cox1 689 bp barcodes are routinely used for identification of Tetrahymena species. Here, we examine whether two shorter nuclear sequences, the 5.8S rRNA gene region and the intergenic region between H3 and H4 histone genes, might also be useful either singly or in combination with each other or cox1. We obtained sequences from ~300 wild isolates deposited at the Tetrahymena Stock Center and analyzed additional sequences obtained from GenBank. The 5.8S rRNA gene and portions of its transcribed flanks identify isolates as to their major clade and uniquely identify some, but not all, species. The ~330 bp H3/H4 intergenic region possesses low intraspecific variability and is unique for most species. However, it fails to distinguish between two pairs of common species and their rarer counterparts, and its use is complicated by the presence of duplicate genes in some species. The results show that while the cox1 sequence is the best single marker for Tetrahymena species identification, 5.8S rRNA, and the H3/H4 intergenic regions sequences are useful, singly or in combination, to confirm cox1 species assignments or as part of a preliminary survey of newly collected Tetrahymena. From our newly collected isolates, the results extend the biogeographical range of T. shanghaiensis and T. malaccensis and identify a new species, Tetrahymena arleneae n. sp. herein described.     

The role of two Spartina species in phytostabilization and bioaccumulation of Co, Cr, and Ni in the Tinto–Odiel estuary (SW Spain)

Vascular plants in salt marshes strongly influence processes of heavy metal accumulation. Many studies have focused on this issue; however, there is a lack of information regarding the effects of plants on the distribution of certain poorly studied metals, such as Co, Cr, and Ni. The aim of this study was to comparatively evaluate the capability of Spartina densiflora Brongn. and Spartina maritima (Curtis) Fernald, to accumulate Co, Cr, and Ni and influence the sediment composition around their roots, investigating whether the observed behavior can change with different levels of sediment pollution. Concentrations of Co, Cr, and Ni were determined in tissues of S. densiflora and S. maritima and in sediments and rhizosediments from the Odiel and Tinto marshes (SW Spain), one of the estuaries most polluted by heavy metals in the world. Concentrations of Co, Cr, and Ni in the belowground tissues of both Spartina species were higher than those in aboveground tissues in all sites sampled. Both species showed potential for phytostabilization of Co, possibly by promoting the formation of high amounts of Fe-oxides in the rhizosphere, which can act to retain the metal within the sediment around the roots. In addition, both Spartina species were found to accumulate Co in their roots, thereby avoiding the translocation of this metal to photosynthetic tissues. At the Tinto marsh, there were no differences recorded in metal levels between sediments and rhizosediments of both species, a fact that could be explained by the extremely high background levels of metals at this site, which may impair the ability of the plant to alter the chemistry of the sediment in contact with the roots. The potential for the immobilization of a large amount of Co in the soil, exhibited by S. densiflora and S. maritima, indicates that both species could be highly useful in the phytostabilization of Co contaminated environments.     

Differential effects of Zn concentrations on Cr(VI) uptake by two Salvinia species: involvement of thiol compounds

Abstract

Floating ferns of the genus Salvinia have great potential for phytoremediation of heavy metals. To date, the effect of essential metals on the accumulation and transport of toxic metals by aquatic ferns has not been suitably established. The aim of this study was to compare the ability of floating leaves of Salvinia minima and Salvinia rotundifolia species to accumulate Cr from Cr(VI solutions containing very low (0.02?mg L^?1) and low (5?mg L^?1) Zn concentrations. After 7-day metal-exposure period, results showed that Zn increased Cr accumulation in S. minima leaves whereas in S. rotundifolia decreased significantly. Contrarily Zn accumulation did not show great differences between species. This fact may indicate that Zn interfere Cr(VI) uptake by S. rotundifolia. Bioconcentration factor (BCF) and translocation factor (TF) were affected differently by Zn in both Salvinia species. Membrane stability index (MSI) of both Salvinia species was decreased significantly by 5?mg L^?1 Zn concentration. Zn ions also increased hydrogen peroxide accumulation in fronds of Salvinia species. Total thiols (TT), non-protein thiols (NPT) and protein-bound thiols (PBT) were differentially affected by Cr(VI) and Zn ions. This study provides evidences on the involvement of different mechanisms against Cr(VI)/Zn toxicity in S. minima and S rotundifolia species.     

竹亚科刚竹属植物的修订(Ⅳ)——Phyllostachys hispida的恢复及其近缘种的分类

在模式标本考证、居群调查和引种栽培的基础上,确认毛壳竹(Phyllostachys hispida S.C.Li,S.H.Wu et S.Y.Chen)与乌竹(P.varioauriculata S.C.Li et S.H.Wu)在新秆性状、秆箨颜色、箨舌高度及颜色、叶鞘毛被上有较大的区别,应作为独立的竹种看待。小叶光壳竹(P.varioauriculata var.glabrata G.H.Lai)也因新秆下部一段呈扁圆形、秆箨基部具长柔毛,叶片很小等特征而明显不同于乌竹,应提升为一个独立的竹种,但由于存在晚出同名问题而给出新名称P.microphylla G.H.Lai。同时还描述了毛壳竹的一新变种,即光壳竹(P.hispida var.glabrivagina G.H.Lai)。日本所产的姬淡竹与毛壳竹属于同一种系,因其学名P.humilis Muroi为一裸名,应予废弃。     

Effects of invasive alien kahili ginger (Hedychium gardnerianum) on native plant species regeneration in a Hawaiian rainforest

Questions: Does the invasive alien Hedychium gardnerianum (1) replace native understory species, (2) suppress natural regeneration of native plant species, (3) increase the invasiveness of other non‐native plants and (4) are native forests are able to recover after removal of H. gardnerianum. Location: A mature rainforest in Hawai'i Volcanoes National Park on the island of Hawai'i (about 1200 m a.s.l.; precipitation approximately 2770 mm yr^?1). Study sites included natural plots without effects of alien plants, ginger plots with a H. gardnerianum‐dominated herb layer and cleared plots treated with herbicide to remove alien plants. Methods: Counting mature trees, saplings and seedlings of native and alien plant species. Using non‐parametric H‐tests to compare impact of H. gardnerianum on the structure of different sites. Results: Results confirmed the hypothesis that H. gardnerianum has negative effects on natural forest dynamics. Lower numbers of native tree seedlings and saplings were found on ginger‐dominated plots. Furthermore, H. gardnerianum did not show negative effects on the invasive alien tree species Psidium cattleianum. Conclusions: This study reveals that where dominance of H. gardnerianum persists, regeneration of the forest by native species will be inhibited. Furthermore, these areas might experience invasion by P. cattleianum, resulting in displacement of native canopy species in the future, leading to a change in forest structure and loss of other species dependent on natural rainforest, such as endemic birds. However, if H. gardnerianum is removed the native Hawaiian forest is likely to regenerate and regain its natural structure.     

Iron Redox Transformation by the Thermo-Acidophilic Archaea from the Genus Sulfolobus

Iron redox transformations by five representative Sulfolobus strains (S. metallicus Kra23, S. tokodaii 7, S. acidocaldarius 98-3, S. solfataricus P1, S. shibatae B12) were studied to clarify the general trend of Fe metabolism across different species of the genus Sulfolobus. Negligible to major Fe(II) oxidation was detected in cell suspensions of the strains. Fe(III)-reducing ability was differently expressed in each strain with dependence on the oxygen level and growth status; growth-uncoupled cell suspensions of all strains reduced Fe(III) under either anaerobic or microaerobic conditions, or under both conditions. A linear correlation between cell growth and Fe(III) reduction was also found in S. tokodaii 7, S. solfataricus P1, and S. shibatae B12. In addition to Fe redox behaviors, the strains were also tested for reduction of highly toxic Cr(VI) to less toxic and soluble Cr(III), as an application possibility; the trend in degree of Cr(V) reduction did not necessarily correspond to that of Fe(III) reduction, suggesting the involvement of different reduction mechanisms.     

Healthy Response from Chromium Survived Pteridophytic Plant-Ampelopteris prolifera with the Interaction of Mycorrhizal Fungus-Glomus deserticola

Interaction between arbuscular mycorrhizal fungus Glomus deserticola and pteridophytic member Ampelopteris prolifera was found abundant on entire growth level based on elemental composition and gaseous exchange as a potential remediation system for phytoextraction of chromium. Inoculated A. prolifera (AM) and non-inoculated A. prolifera (Non-AM) were supplied with two Cr species: 12 mmol of trivalent cation (Cr⁺³) [Cr(III)] and 0.1 mmol of divalent dichromate anion (Cr₂O₇ ^?2) [Cr(VI)]. Both Cr species were found to be depressed in overall growth and inefficient stomatal conductance (g_s) and net photosynthesis (NP). Mycorrhizal association was found to be natural scavenger of Cr toxicity as indicated by greater growth in plants exposed to Cr species, and increased gas exchange of Cr(III) treated plants. Though, chromium reduction resulted lower level of nitrogen (N), phosphorus (P), and potassium (K) but interestingly elevated the level of aluminum (Al), iron (Fe), and zinc (Zn) uptake in many folds which is the significance of sustainable growth of plant.