Body condition score of Nellore beef cows: a heritable measure to improve the selection of reproductive and maternal traits

Despite the economic importance of beef cattle production in Brazil, female reproductive performance, which is strongly associated with production efficiency, is not included in the selection index of most breeding programmes due to low heritability and difficulty in measure. The body condition score (BCS) could be used as an indicator of these traits. However, so far little is known about the feasibility of using BCS as a selection tool for reproductive performance in beef cattle. In this study, we investigated the sources of variation in the BCS of Nellore beef cows, quantified its association with reproductive and maternal traits and estimated its heritability. BCS was analysed using a logistic model that included the following effects: contemporary group at weaning, cow weight and hip height, calving order, reconception together with the weight and scores of conformation and early finishing assigned to calves at weaning. In the genetic analysis, variance components of BCS were estimated through Bayesian inference by fitting an animal model that also included the aforementioned effects. The results showed that BCS was significantly associated with all of the reproductive and maternal variables analysed. The estimated posterior mean of heritability of BCS was 0.24 (highest posterior density interval at 95%: 0.093 to 0.385), indicating an involvement of additive gene action in its determination. The present findings show that BCS can be used as a selection criterion for Nellore females.     

Energy balance of individual cows can be estimated in real-time on farm using frequent liveweight measures even in the absence of body condition score

Existing methods for estimating individual dairy cow energy balance typically either need information on feed intake, that is, the traditional input–output method, or frequent measurements of BW and body condition score (BCS), that is, the body reserve changes method (EB_body). The EB_body method holds the advantage of not requiring measurements of feed intake, which are difficult to obtain in practice. The present study aimed first to investigate whether the EB_body method can be simplified by basing EB_body on BW measurements alone, that is, removing the need for BCS measurements, and second to adapt the EB_body method for real-time use, thus turning it into a true on-farm tool. Data came from 77 cows (primiparous or multiparous, Danish Holstein, Red or Jersey) that took part in an experiment subjecting them to a planned change in concentrate intake during milking. BW was measured automatically during each milking and real-time smoothed using asymmetric double-exponential weighting and corrected for the weight of milk produced, gutfill and the growing conceptus. BCS assessed visually with 2-week intervals was also smoothed. EB_body was calculated from BW changes only, and in conjunction with BCS changes. A comparison of the increase in empty body weight (EBW) estimated from EB_body with EBW measured over the first 240 days in milk (DIM) for the mature cows showed that EB_body was robust to changes in the BCS coefficients, allowing functions for standard body protein change relative to DIM to be developed for breeds and parities. These standard body protein change functions allow EB_body to be estimated from frequent BW measurements alone, that is, in the absence of BCS measurements. Differences in EB_body levels before and after changes in concentrate intake were calculated to test the real-time functionality of the EB_body method. Results showed that significant EB_body increases could be detected 10 days after a 0.2 kg/day increase in concentrate intake. In conclusion, a real-time method for deriving EB_body from frequent BW measures either alone or in conjunction with BCS measures has been developed. This extends the applicability of the EB_body method, because real-time measures can be used for decision support and early intervention.     

Development of a Body Condition Scoring Index for Female African Elephants Validated by Ultrasound Measurements of Subcutaneous Fat

Obesity-related health and reproductive problems may be contributing to non-sustainability of zoo African elephant (Loxodonta africana) populations. However, a major constraint in screening for obesity in elephants is lack of a practical method to accurately assess body fat. Body condition scoring (BCS) is the assessment of subcutaneous fat stores based on visual evaluation and provides an immediate appraisal of the degree of obesity of an individual. The objective of this study was to develop a visual BCS index for female African elephants and validate it using ultrasound measures of subcutaneous fat. To develop the index, standardized photographs were collected from zoo (n = 50) and free-ranging (n = 57) female African elephants for identifying key body regions and skeletal features, which were then used to visually determine body fat deposition patterns. This information was used to develop a visual BCS method consisting of a list of body regions and the physical criteria for assigning an overall score on a 5-point scale, with 1 representing the lowest and 5 representing the highest levels of body fat. Results showed that as BCS increased, ultrasound measures of subcutaneous fat thickness also increased (P<0.01), indicating the scores closely coincide with physical measures of fat reserves. The BCS index proved to be reliable and repeatable based on high intra- and inter-assessor agreement across three assessors. In comparing photographs of wild vs. captive African elephants, the median BCS in the free-ranging individuals (BCS = 3, range 1–5) was lower (P<0.001) than that of the zoo population (BCS = 4, range 2–5). In sum, we have developed the first validated BCS index for African elephants. This tool can be used to examine which factors impact body condition in zoo and free-ranging elephants, providing valuable information on how it affects health and reproductive potential of individual elephants.     

A reliable body condition scoring technique for estimating condition in African buffalo

Evaluating animal body condition is a necessary component of many ecological studies. Although many methods for assessing animal body condition have been developed, relatively few can be used for estimating condition on live animals. Noninvasive body condition scoring techniques have been developed for assessing condition in livestock and more recently such techniques have been applied to wild ungulates. In this study, we examined the reliability of a body condition scoring technique for assessing condition in African buffalo (Syncerus caffer caffer). We compared a body condition score (BCS) based on visual assessment and manual palpation of an animal’s body to two standard metrics of condition widely used in mammals: kidney fat index (KFI) and haematocrit (HCT). Across all buffalo, BCS was significantly and positively correlated with both KFI and HCT. For HCT, this pattern was observed among adults, juveniles, males and females; and in the wet season but not in the dry season. For KFI, BCS was significantly and positively correlated with KFI among adults, juveniles and males, but not in females. Overall, our results suggest that the BCS technique can serve as a useful method for estimating body condition in buffalo.     

苔藓-蓝藻共生体关系与固氮能力研究进展

苔藓-蓝藻共生体(BCS)能固氮, 是养分贫瘠地区森林氮输入的不可忽视的来源。BCS关系与固氮能力研究为科学认识生态系统氮输入与氮循环过程和机理提供了新的视角和有效途径, 具有重要的理论价值。然而, BCS关系、固氮作用与机理的研究迄今未受到足够关注, 报道较少, 认识仍然是零星而片段化的。基于系统查阅的相关文献, 该文综述了BCS的种类组成与共生关系类型、固氮能力及所固定氮的去向及其影响因素和作用机理, 指出了存在的问题及需要深入关注和亟待突破的4个研究方向。     

Senescence-associated β-galactosidase—A biomarker of aging,DNA damage,or cell proliferation restriction?

The most popular biomarker of cellular senescence (BCS) is the activity of senescence-associated β-galactosidase (SA-β-Gal). Today, this is the prevailing BCS in the studies based on the definition of cell senescence (which we do not accept) understood primarily as accumulation in the cells (most often—those not prone to replicative senescence) of certain BCS under the impact of various external factors causing DNA damage. However, some papers provide evidence that SA-β-Gal activity in the cells is not a good BCS, because it often depends not so much on age (in vitro or in vivo) as on the method of research, the presence of certain pathologies, and, what is most important, on the proliferative status of the cells studied. Apparently, the restriction of cell proliferation under certain conditions (due to differentiation, contact inhibition, DNA damage, some diseases, etc.) is itself the factor that stimulates SA-β-Gal expression. In other words, SA-β-Gal appears even in “young” cells if their proliferation is suppressed. Such data, in our opinion, are additional evidence for the validity of our concept of aging, which postulates the leading role of cell proliferation restriction in the age-related accumulation of various macromolecular defects (primarily DNA damage) in cells.     

BCS1L is expressed in critical regions for neural development during ontogenesis in mice

BCS1L is a chaperone necessary for the incorporation of Rieske FeS and Qcr10p into complex III (CIII) of the respiratory chain. Mutations in the BCS1L gene cause early fetal growth restriction and a lethal neonatal disease in humans, however, the pathogenesis remains unclear. Here, we analysed the expression of BCS1L during mouse embryonic development and compared its expression with that of the mitochondrial markers Porin, GRIM19, Core I, and Rieske FeS. BCS1L was strongly expressed in embryonic tissues already at embryonic days 7 (E7) and 9 whereas the expression of Porin and Rieske FeS was not as evident at this time point. At E11, BCS1L, Porin, and Rieske FeS had overlapping expression patterns in organs known to contain high numbers of mitochondria such as heart, liver and somites. In contrast, BCS1L was differently distributed compared to the mitochondrial proteins Porin, Rieske FeS, Core I and Grim 19 in the floor plate of the E11, E12 and E13 neural tube. These results show that the expression pattern of BCS1L only partially overlaps with the expression of Porin and Rieske FeS. Thus, BCS1L alone or in cooperation with Rieske FES may during development have previously unknown functions beside its role in assembly of complex III. The floor plate of the neural tube is essential for dorsal ventral patterning and the guidance of the developing neurons to their targets. The predominant expression of BCS1L in this region, together with its presence in peripheral ganglia from E13 onwards, indicates a role for BCS1L in the development of neural structures.     

Bryophyte-cyanobacteria symbioses and their nitrogen fixation capacity—A review

苔藓-蓝藻共生体(BCS)能固氮, 是养分贫瘠地区森林氮输入的不可忽视的来源。BCS关系与固氮能力研究为科学认识生态系统氮输入与氮循环过程和机理提供了新的视角和有效途径, 具有重要的理论价值。然而, BCS关系、固氮作用与机理的研究迄今未受到足够关注, 报道较少, 认识仍然是零星而片段化的。基于系统查阅的相关文献, 该文综述了BCS的种类组成与共生关系类型、固氮能力及所固定氮的去向及其影响因素和作用机理, 指出了存在的问题及需要深入关注和亟待突破的4个研究方向。     

Body condition score and live-weight effects on milk production in Irish Holstein-Friesian dairy cows

The objective of the present study was to quantify the relationships among body condition score (BCS; scale 1 to 5), live weight (WT) and milk production in Irish Holstein-Friesian spring calving dairy cows. Data were from 66 commercial dairy herds during the years 1999 and 2000. The data consisted of up to 9886 lactations with records for BCS or WT at least once pre-calving, or at calving, nadir or 60 days post-calving. Change in BCS and WT was also calculated between time periods. Mixed models with cow included as a random effect were used to quantify the effect of BCS and WT, as well as change in each trait, on milk yield, milk fat concentration and milk protein concentration. Significant and sometimes curvilinear associations were observed among BCS at calving or nadir and milk production. Total 305-day milk yield was greatest in cows calving at a BCS of 4.25 units. However, cows calving at a BCS of 3.50 units produced only 68 kg less milk than cows calving at a BCS of 4.25 units while cows calving at 3.25 or 3.00 BCS units produced a further 50 and 114 kg less, respectively. Cows that lost more condition in early lactation produced more milk of greater fat and protein concentration, although the trend reversed in cows that lost large amounts of condition post-calving. Milk yield increased with WT although the marginal effect decreased as cows got heavier. Milk fat and protein concentration in early lactation also increased with WT pre-calving, calving and nadir, although WT did not significantly affect average lactation milk fat concentration.     

Mean difference in live-weight per incremental difference in body condition score estimated in multiple sheep breeds and crossbreds

Body condition score (BCS) is a subjective assessment of the proportion of body fat an animal possesses and is independent of frame size. There is a growing awareness of the importance of mature animal live-weight given its contribution to the overall costs of production of a sector. Because of the known relationship between BCS and live-weight, strategies to reduce live-weight could contribute to the favouring of animals with lesser body condition. The objective of the present study was to estimate the average difference in live-weight per incremental change in BCS, measured subjectively on a scale of 1 to 5. The data used consisted of 19 033 BCS and live-weight observations recorded on the same day from 7556 ewes on commercial and research flocks; the breeds represented included purebred Belclare (540 ewes), Charollais (1484 ewes), Suffolk (885 ewes), Texel (1695 ewes), Vendeen (140 ewes), as well as, crossbreds (2812 ewes). All associations were quantified using linear mixed models with the dependent variable of live-weight; ewe parity was included as a random effect. The independent variables were BCS, breed (n=6), stage of the inter-lambing interval (n=6; pregnancy, lambing, pre-weaning, at weaning, post-weaning and mating) and parity (1, 2, 3, 4 and 5+). In addition, two-way interactions were used to investigate whether the association between BCS and live-weight differed by parity, a period of the inter-lambing interval or breed. The association between BCS and live-weight differed by parity, by a period of the inter-lambing interval and by breed. Across all data, a one-unit difference in BCS was associated with 4.82 (SE=0.08) kg live-weight, but this differed by parity from 4.23 kg in parity 1 ewes to 5.82 kg in parity 5+ ewes. The correlation between BCS and live-weight across all data was 0.48 (0.47 when adjusted for nuisance factors in the statistical model), but this varied from 0.48 to 0.53 by parity, from 0.36 to 0.63 by stage of the inter-lambing interval and from 0.41 to 0.62 by breed. Results demonstrate that consideration should be taken of differences in BCS when comparing ewes on live-weight as differences in BCS contribute quite substantially to differences in live-weight; moreover, adjustments for differences in BCS should consider the population stratum, especially breed.     

Mutations in PRDM5 in brittle cornea syndrome identify a pathway regulating extracellular matrix development and maintenance

Extreme corneal fragility and thinning, which have a high risk of catastrophic spontaneous rupture, are the cardinal features of brittle cornea syndrome (BCS), an autosomal-recessive generalized connective tissue disorder. Enucleation is frequently the only management option for this condition, resulting in blindness and psychosocial distress. Even when the cornea remains grossly intact, visual function could also be impaired by a high degree of myopia and keratoconus. Deafness is another common feature and results in combined sensory deprivation. Using autozygosity mapping, we identified mutations in PRDM5 in families with BCS. We demonstrate that regulation of expression of extracellular matrix components, particularly fibrillar collagens, by PRDM5 is a key molecular mechanism that underlies corneal fragility in BCS and controls normal corneal development and maintenance. ZNF469, encoding a zinc finger protein of hitherto undefined function, has been identified as a quantitative trait locus for central corneal thickness, and mutations in this gene have been demonstrated in Tunisian Jewish and Palestinian kindreds with BCS. We show that ZNF469 and PRDM5, two genes that when mutated cause BCS, participate in the same regulatory pathway.     

Short communication: Differences in genetic merit for visually-assessed body condition score materialises as phenotypic differences in tactile-based body condition score in commercial dairy cows

Body condition score (BCS) is a known risk factor for cow health and well-being. Many different BCS scales and systems for assessment exist;while the scales used for assessing BCS vary, differences in how BCS is assessed (i.e., visual versus visual plus tactile) and the extent of training and experience of the assessor (i.e., professional linear classifiers versus producers) also contributes to the underlying variability. Registered dairy cows globally are routinely assessed for linear type traits which describe biological extremes in the morphological attributes; BCS and a correlated trait angularity are within this suite of traits assessed. These linear-type data are used to generate estimates of genetic merit (predicted transmitting ability), but how these estimates manifest themselves as phenotypic differences when assessed by producers on commercial multiparous cows has never been quantified. To evaluate this, 58 440 phenotypic BCS records from 48 823 lactations in 38 608 cows were used. Associations were undertaken using linear mixed models relating phenotypic BCS to genetic merit after accounting for nuisance factors. Differences in genetic merit for either BCS or angularity (assessed visually by professionals on a 1 to 9 scale just once during lactation in primiparous registered cows) translated to phenotypic difference in BCS (assessed by producers using both tactile and visual assessment on a 1 to 5 scale across lactation in commercial dairy cows). The partial correlation between test phenotypic BCS and genetic merit for either BCS or angularity was 0.13 and  0.10, respectively. Based on the model coefficients estimated in the present study, the mean expected difference in phenotypic BCS on a 1 to 5 scale between the top and bottom 10% on genetic merit for BCS or angularity was 0.28 and 0.31 units, respectively. Results from the present study clearly provide confidence that genetic merit for BCS or angularity based on a single visual assessment in primiparous cows is useful to breed for cows of better body condition, irrespective of stage of lactation or parity.     

Correlation between reproductive efficiency, as determined by new mathematical indexes, and the body condition score in dairy cows

The aim of this work was to study a new mathematical model based on dynamic indexes designed to evaluate reproductive efficiency in dairy herds and to correlate the new index with the body condition score (BCS) in order to evaluate the reproductive state of the cows post partum. Four groups of dairy cows were used: 1) loose-housed Italian Friesian (loose Friesian, n = 190); 2) stanchioned Italian Friesian (stanchioned Friesian, n = 121); 3) stanchioned Italian Simmental (stanchioned Simmental, n = 120); and 4) loose-housed selected Italian Friesian cows (BCS test, n = 117). The first 3 herds were used to develop the new mathematical model while the fourth was used to correlate the method with the BCS. The new model was developed from the analysis of progesterone (P4) concentrations in whey and the frequency distribution of the cows in 3 reproductive states: cyclicity, acyclicity and pregnancy. The frequency distribution generated 3 curves, the intersections of which form a closed area. The barycenter of this closed area gives a simple static representation of the reproductive efficiency of each herd. We also studied the movement of the barycenter with time (dynamic index) for each reproductive status curve. The dynamic index allowed for evaluation of the reproductive efficiency of a group of cows at 40 d after calving, by analyzing the evolution of the different reproductive states post partum. A reproductive index called Cycle Time was characterized in a 240-d period of observation as the interval needed to bring all the animals from acyclic to pregnant status. The loose Friesian cows had the best reproductive efficiency. The BCS test was used to divide cows into 3 groups depending on the percentage loss of BCS due to the negative energy balance at 30 d post partum. Cows which lost more than 20% in BCS had the lowest reproductive efficiency. The following protocol was devised to monitor herds in order to identify cows that were likely to have reproductive problems: 1) measure BCS 10 d before calving; 2) monitor progesterone in whey starting 5 d after calving; 3) measure BCS 30 d after calving; 4) isolate cows that lost more than 20% of BCS; 5) measure progesterone only in the cows that lose more than 20% of BCS; 6) activate appropriate feeding strategies to help prevent excessive mobilization of body fat reserves.     

Fast parameter calibration of a cardiac electromechanical model from medical images based on the unscented transform

Patient-specific cardiac modelling can help in understanding pathophysiology and predict therapy planning. However, it requires to personalize the model geometry, kinematics, electrophysiology and mechanics. Calibration aims at providing proper initial values of parameters before performing the personalization stage which involves solving an inverse problem. We propose a fast automatic calibration method of the mechanical parameters of a complete electromechanical model of the heart based on a sensitivity analysis and the Unscented Transform algorithm. A new implementation of the complete Bestel–Clement–Sorine (BCS) cardiac model is also proposed, in a modular and efficient framework. A complete sensitivity analysis is performed that reveals which observations on the volume evolution are significant to characterize the global behaviour of the myocardium. We show that the calibration method gives satisfying results by optimizing up to 5 parameters of the BCS model in only one iteration. This method was evaluated synthetically as well as on 7 volunteers with a mean relative error from the real data of 10 %. This calibration is designed to replace manual parameter estimation as well as initialization steps that precede automatic personalization algorithms based on images.     

Relationships between body condition score and ultrasound skin-associated subcutaneous fat depth in equids

Background

In equids, health and welfare depend on body composition. A growing number of equids are now used as leisure and companion animals, and often found overfeed. The need for a close monitoring of body fatness led to the search for tools allowing a rapid and non-invasive estimation of fatness. This study intends to assess real-time ultrasonography (RTU) usefulness in establishing a relationship between ultrasound measures of subcutaneous fat–plus–skin thickness (SF-Skin) and body condition score (BCS) in horses and donkeys. Forty-three healthy animals (16 donkeys and 27 horses) were used in this study to generate 95 records (RTU and BCS pairs), in multiple RTU sessions for 2 years. Using visual appraisal and palpation, BCS was graded in a 1–9 points scale. Real-time ultrasonography images were taken using a 7.5 MHz linear transducer, placed perpendicular to the backbone, over the 3rd lumbar vertebra. ImageJ was used to measure the SF-Skin on RTU images. The relation between BCS and SF-Skin measurements was tested by linear and polynomial regression analysis.

Results

The BCS values were similar in horses (5.50; from 3 to 8 points) and donkeys (5.14; from 3 to 7 points). The SF-Skin measures show a similar trend (a mean of 7.1 and 7.7 mm in horses and donkeys, respectively). A polynomial regression among BCS and SF-Skin explained 92 and 77 % of the variation in donkeys and horses respectively. The coefficient of determination was considerably higher for the regression developed for donkeys compared with that of horses (R2 = 0.92 vs. 0.77, respectively), which reduced the accuracy of the method in horses. Both the linear and polynomial models tested show a strong relationship among BCS and SF-Skin for donkeys (R2 > 0.91; P < 0.01) and horses (R2 > 0.74; P < 0.01), despite that the extremes for BCS did not existed in our sample.

Conclusions

Our results showed the potential RTU usefulness to monitor body fat in equids. Using a high-frequency transducer and RTU together with image analysis allowed the identification of small SF-skin variations. This report will support further studies on the relationships between SF-Skin and BCS, particularly in extreme BCS scores.

     

GRACILE syndrome,a lethal metabolic disorder with iron overload,is caused by a point mutation in BCS1L

GRACILE (growth retardation, aminoaciduria, cholestasis, iron overload, lactacidosis, and early death) syndrome is a recessively inherited lethal disease characterized by fetal growth retardation, lactic acidosis, aminoaciduria, cholestasis, and abnormalities in iron metabolism. We previously localized the causative gene to a 1.5-cM region on chromosome 2q33-37. In the present study, we report the molecular defect causing this metabolic disorder, by identifying a homozygous missense mutation that results in an S78G amino acid change in the BCS1L gene in Finnish patients with GRACILE syndrome, as well as five different mutations in three British infants. BCS1L, a mitochondrial inner-membrane protein, is a chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Pulse-chase experiments performed in COS-1 cells indicated that the S78G amino acid change results in instability of the polypeptide, and yeast complementation studies revealed a functional defect in the mutated BCS1L protein. Four different mutations in the BCS1L gene have been reported elsewhere, in Turkish patients with a distinctly different phenotype. Interestingly, the British and Turkish patients had complex III deficiency, whereas in the Finnish patients with GRACILE syndrome complex III activity was within the normal range, implying that BCS1L has another cellular function that is uncharacterized but essential and is putatively involved in iron metabolism.     

Histopathological alterations in the antral ovarian follicles in dairy cows with a tendency to emaciation

The aim of the study was to define interrelationships between histopathological alterations in ovarian antral follicles and body condition in dairy cows with a tendency to emaciation (BCS 1 and 2) compared with dairy cows with normal body condition (BCS 3). The ovaries were recovered from slaughtered cyclic dairy cows (at the luteal phase of the cycle) of Czech Fleckvieh and Holstein breeds at different times of the post-partum period. The animals were estimated as belonging to certain grade of body condition score (BCS) according to a 5-point scale. Only dairy cows with BCS1 (emaciation; n=6), BCS2 (tendency to emaciation; n=5) and BCS3 (optimal body condition status; n=6) were available for the experiment. The ovarian samples were embedded into Technovit 7100 resin; the tissue sections were stained with buffered basic fuchsine with toluidine blue. For acidic mucopolysaccharides (aMPS) a combination of PAS-technique with Alcian blue was used. Histological analysis showed that emaciation was associated with an increased occurrence of late (cystic) and luteinization-related atresia in granulosa and theca cells and increased levels of aMPS in small atretic follicles. Our observations indicate that dairy cows with a tendency to emaciation (BCS 2) or emaciated (BCS 1) have elevated occurrence of late atresia and atresia with luteinization, while initial atresia is less. This expands our basic knowledge of ovarian histopathology providing new insight into the association of antral follicle atresia and body condition status in dairy cows.     

Body condition score,morphometric measurements and estimation of body weight in mature Icelandic horses in Denmark

Background

Obesity is related to the development of several diseases like insulin resistance and laminitis in horses. The prevalence of obesity among mature Icelandic horses in Denmark has not been investigated previously. This study aimed to find the prevalence of obesity, to compare body condition score (BCS) based on owner perception with that of an experienced person and to correlate the BCS to body weight (BW) and morphometric measures in a group of mature Icelandic horses in Denmark. A total of 254 Icelandic horses (≥4 years; 140 geldings, 105 mares, 9 stallions) from 46 different farms were included. All horses were assigned a BCS on a scale from 1 to 9 (1 is poor, 5 is moderate and 9 is extremely fat) by their owner and by an experienced person. Two weight tapes were used to assess BW. Girth circumference (GC), neck circumference (NC) and height at withers (HW) were measured, and the GC:HW and NC:HW ratios were calculated.

Results

Categorising the horses into four groups, 5.9 % were underweight (BCS 3–4), 70.1 % were optimal (BCS 5–6), 13.8 % were overweight (BCS 7) and 10.2 % were obese (BCS 8–9). The GC:HW and NC:HW ratios increased with increasing BCS, as did the BW estimated with the weight tapes. A GC:HW ratio >1.21 might indicate overweight or obesity in Icelandic horses. Horse owners underestimated the BCS of their horses compared to an experienced person.

Conclusions

The results from this study show that 24.0 % of mature Icelandic horses in Denmark are overweight or obese, and that owners tend to underestimate the BCS of their Icelandic horses. The GC:HW ratio might indicate overweight or obesity, however, the ratio for Icelandic horses is different than reported for horses and ponies of other breeds.

     

AGRA: analysis of gene ranking algorithms

Often, the most informative genes have to be selected from different gene sets and several computer gene ranking algorithms have been developed to cope with the problem. To help researchers decide which algorithm to use, we developed the analysis of gene ranking algorithms (AGRA) system that offers a novel technique for comparing ranked lists of genes. The most important feature of AGRA is that no previous knowledge of gene ranking algorithms is needed for their comparison. Using the text mining system finding-associated concepts with text analysis. AGRA defines what we call biomedical concept space (BCS) for each gene list and offers a comparison of the gene lists in six different BCS categories. The uploaded gene lists can be compared using two different methods. In the first method, the overlap between each pair of two gene lists of BCSs is calculated. The second method offers a text field where a specific biomedical concept can be entered. AGRA searches for this concept in each gene lists' BCS, highlights the rank of the concept and offers a visual representation of concepts ranked above and below it. AVAILABILITY AND IMPLEMENTATION: Available at http://agra.fzv.uni-mb.si/, implemented in Java and running on the Glassfish server. CONTACT: simon.kocbek@uni-mb.si.