Imidazolate-bridged dicopper(II) and copper(II)–zinc(II) complexes of macrocyclic ligand with methylimidazol pendants: Model study of copper(II)–zinc(II) superoxide dismutase

Two new homo- and hetero-dinuclear complexes, [Cu₂L(im)](ClO₄)₃4H₂O (1) and [CuZnL(im)](ClO₄)₃4H₂O (2) (where Im=1H-1midazole and L = 3, 6, 9, 16, 19, 22-hexaaza-6, 19-bis(1H-imidazol-4-ylmethyl)tricycle[22, 2, 2, 2^11,14]triaconta-1, 11, 13, 24, 27, 29-hexaene) were synthesized and characterized as model compounds for the active site of copper(II)–zinc(II) superoxide dismutase (Cu₂Zn₂–SOD). X-ray crystal structure analysis revealed that the metal centers in both complexes exhibit distorted trigonal-bipyramid coordination geometry and the CuCu and CuZn distances are both 6.02 Å. Magnetic and ESR spectral measurements of 1 showed antiferromagnetic exchange interactions between the imidazolate-bridged Cu(II) ions. The ESR spectrum of 2 displays typical signals of mononuclear Cu(II) complex, demonstrating the formation of heterodinuclear complex 2 rather than a mixture of homodinuclear Cu(II)/Zn(II) complexes. pH-dependent ESR and UV–visible spectral measurements manifest that the imidazolate exists as a bridging ligand from pH 6 to 11 for both complexes. The IC₅₀ values of 1.96 and 1.57 μM [per Cu(II) ion] for 1 and 2 suggest that they are good models for the Cu₂Zn₂–SOD.     

CHMetal(II) axial interaction in planar complexes (metal = Cu, Pd) and implications for possible environmental effects of alkyl groups at biological copper sites

Intramolecular M(II)H–C interactions (M(II)=Cu(II), Pd(II)) involving a side chain alkyl group of planar d⁸ and d⁹ metal complexes of the N-alkyl (R) derivatives of N,N-bis(2-pyridylmethyl)amine with an N₃Cl donor set were established by structural and spectroscopic methods. The methyl group from the branched alkyl group (R = 2,2-dimethylpropyl and 2-methylbutyl) axially interacts with the metal ion with the MC and MH distances of 3.056(3)–3.352(9) and 2.317(1)–2.606(1) Å, respectively, and the M–H–C angles of 122.4–162.3°. The Cu(II) complexes showing the interaction have a higher redox potential as compared with those without it, and the ¹H NMR signals of the interacting methyl group in Pd(II) complexes shifted downfield relative to the ligand signals. Dependence of the downshift values on the dielectric constants of the solvents used indicated that the M(II)H–C interaction is mainly electrostatic in nature and may be regarded as a weak hydrogen bond. Implications for possible environmental effects of the leucine alkyl group at the type 1 Cu site of fungal laccase are also discussed.     

Chains and channels in polynuclear copper(II) complexes with 2,3-bis(2-pyridyl)pyrazine (dpp) as bridging ligand; syntheses, crystal structures and magnetic properties

The preparation and crystal structures for three Cu(II) polynuclear, chain complexes with 2,3-bis(2-pyridyl)pyrazine (dpp) as bridging ligand are reported, [Cu(dpp)(H₂O)₂]_n(NO₃)_2n·2n/3H₂O (1), [Cu(dpp)(H₂O)₂]_n(CF₃SO₃)_2n (2), and [Cu(dpp)(H₂O)₂]_n(BF₄)_2n·2nH₂O (3). For the latter compound the crystal structure at four different temperatures have been studied. Variable-temperature magnetic susceptibility data and ESR measurements of 1–3 and of the related copper(II) chain [Cu(dpp)(H₂O)₂]_n(ClO₄)_2n·2nH₂O (4) (whose structure was previously reported) have been performed. Compounds 1 and 2 crystallize in the same trigonal space group, R c; 3 is orthorhombic, space group Pbca. Complexes 1 and 2 are built of linear dpp-bridged chains which extend along threefold screw axes. The copper atom has in each case an elongated octahedral geometry with pyrazine nitrogen atoms in axial positions. The prominent feature of the crystal packing is the supramolecular arrangement of six chains around a threefold inversion axis, creating channels housing the counter ions, and in the case of 1, also crystal water. In 3 the chain is zig–zag shaped and extends along a twofold screw axis. Counter ions and crystal water are situated in channels formed between four symmetry related chains. At room temperature (r.t.) the X-ray results show a copper ion with a compressed octahedral coordination geometry, pyrazine and pyridyl nitrogen atoms binding in equatorial and axial positions, respectively. The low temperature X-ray studies of 3 show significant changes in the copper coordination geometry, strongly suggesting that the apparent compressed geometry at r.t. is due to a dynamic Jahn–Teller distortion. The CuCu separations across the bridging dpp at r.t. are, 7.133(1) (1), 7.228(1) (2), 7.005(1) (3) and 7.002(2) Å (4). X-band ESR spectra of 1 and 2 exhibit the pattern of Cu(II) in elongated geometry (g>g>2.0), whereas those of 3 and 4 exhibit inverse (g>g>2.0) patterns with a shoulder in the perpendicular signal. Complexes 1–4 exhibit a Curie law behaviour with very weak intrachain antiferromagnetic coupling, the relevant magnetic parameters being J=−0.27 cm⁻¹, g=2.11 for 1, J=−0.17 cm⁻¹, g=2.09 for 2, J=−1.38 cm⁻¹, g=2.15 for 3, and J=−1.36 cm⁻¹, g=2.14 for 4 (the Hamiltonian being =−JS_AS_B).     

Lithium complexes of tri- and hexaanionic cyclophosphazenates, the impact of metal coordination on the ring conformation

Cyclophosphazenes (RNH)₆P₃N₃1 react with three and six equivalents of butyllithium in thf to give lithium complexes of tri- (2) and hexaanionic (3) phosphazenate ligands, respectively. A variety of lithium complexes 2 and 3 were prepared and structurally characterised. The degree of puckering of the (PN)₃ ring systems correlates with increasing ligand charge. The trianions solely exhibit the chair conformation; their deprotonated side groups are positioned at equatorial sites. This conformation ensures that the charge of the ligand is most effectively distributed and it also provides three distinct coordination sites for the three lithium ions. Complexes of the trianion can be monomeric or dimeric. Aryl-N(exo) derivatives tend to form monomers, while alkyl derivatives form dimeric sandwich complexes. Complexes of the hexaanion fall into two categories. Binary complexes, which contain the ligand and lithium ions, form dimers; the (PN)₃ ring in these complexes exhibit a chair conformation. Complexes which, in addition, contain small monodentate ions, such as chloride, fall into the second category; their ring systems adopt a boat conformation.     

Investigation of amino acid containing [FeFe] hydrogenase models concerning pendant base effects

The present investigations deal with the modeling of the peptide surrounding of [FeFe] hydrogenase using amine containing disulphides to simulate possible influences of the amino acid lysine (K237) on the electrochemical and electrocatalytic properties of biomimetic compounds based on [Fe2S2] moieties. Fe₃(CO)₁₂ was reacted with Boc-4-amino-1,2-dithiolane, Boc-Adt-OMe (Adt = 4-amino-1,2-dithiolane-4-carboxylic acid, Boc = tert-butoxycarbonyl) and Boc-Adp tert-butyl ester (Adp = (S)-2-amino-3-(1,2-dithiolan-4-yl)propionic acid) to elongate the FeN distance in comparison to the well known [Fe₂{(SCH₂)₂NR}(CO)₆] model complexes. Efforts to deprotect the complexes containing Boc-4-amino-1,2-dithiolane with trifluoroacetic acid result in the formation of [Fe₃(μ³-O)(μ-O₂C₂F₃)₆(OC₄H₈)₂(H₂O)]. The novel [2Fe2S] complexes are characterized using spectroscopic, electrochemical techniques and X-ray diffraction studies.     

Crystal and molecular structures of substituted α-d-glucopyranosides

The crystal and molecular structures of methyl 2,4,6-tri-O-pivaloyl-α-d-glucopyranoside (1), methyl 4,6-O-(R)-benzylidene-2-O-pivaloyl-α-d-glucopyranoside (2), and methyl 4,6-O-(R)-benzylidene-2,3-di-O-pivaloyl-α-d-glucopyranoside (3) were determined by X-ray analysis. Crystals of 1 are orthorhombic, space group P2₁2₁2₁ with the unit cell a = 13.026(2), b = 16.832, c = 11.929(2) Å, Z = 4. Crystals of 2 are monoclinic, space group P2₁. The unit-cell parameters are a = 6.519(1), b = 14.664(4), c = 10.635(4) Å, β = 93.18(1)°, Z = 2. Crystals of 3 are orthorhombic, space group P2₁2₁2₁ with a = 10.006(3), b = 13.874(3), c = 18.527(5) Å, Z = 4. The structures were solved by MULTAN and refined by a full-matrix procedure to final values of R = 0.084 (1), 0.048 (2), and 0.069 (3). The pyranose ring in each compound adopts the ⁴C₁ conformation. The 1,3-dioxane rings in 2 and 3 show a chair conformation. The molecular packing in 1 is through the hydrogen bonds involving HO-3 and the 6-O-pivaloyl carbonyl group [HO-3 ⋯ O-9, 2.855(8) Å], which connect the molecules into a chain along

. The endocyclic oxygen atom is involved in an intermolecular hydrogen-bond with HO-3 [2.848(4) Å], joining molecules of 2 into the chains along

. There are no free hydroxyl groups in 3 and molecular packing reflects van der Waals interactions only.     

Evaluation of enantioselectivity in lipase-catalyzed acylation of hydroxyalkylphosphine oxides

The lipase-catalyzed optical resolution of 2-, 3-, and 5-hydroxyalkyl phosphorus compounds 1 provided the corresponding optically pure diastereomers in good yields. (S_P, R)- and (R_P, S)-1 were acylated faster than (S_P, S)- and (R_P, R)-1. The stereoselectivity at the phosphorus atom changed with the flexibility of the active sites in the lipases. The stereoselectivity at the phosphorus atom was higher in the reaction of 1a than in the reaction of 1b,c. The reaction rate of -hydroxyalkylphosphine oxide 1c was faster than that of 1a, although less enantioselectivity was observed at the phosphorus atom.     

Synthesis and complexation of tetrakis(diphenylphosphinomethyl)calix[4]arene adopting the 1,3-alternate conformation

Novel upper-rim modified tetraphosphinocalix[4]arenes (5a-b) adopting 1,3-alternate conformation have been synthesized. Reaction of 5,11,17,23-tetrachloromethyl-25,26,27,28-tetrahydroxycalix[4]arene (1) with Ph₂POEt gave 5,11,17,23-tetrakis(diphenylphosphinoylmethyl)-25,26,27,28-tetrahydroxycalix[4]arene (2). Tetra-O-substitution of 2 with n-propyl iodide or benzyl bromide in the presence of K₂CO₃ carried out to afford 5,11,17,23-tetrakis(diphenylphosphinoylmethyl)-25,26,27,28-tetrapropoxy-(3a) or -benzyloxycalix[4]arene (3b), whereas di-O-substituted calix[4]arene, 5,11,17,23-tetrakis(diphenylphosphinoylmethyl)-25,27-dipropoxy-26,28-dihydroxycalix[4]arene (4), was obtained exclusively when Na₂CO₃ was used as base. Reduction of 3a-b with PhSiHCl₂ afforded 5,11,17,23-tetrakis(diphosphinomethyl)-25,26,27,28-tetrapropoxy-(5a) and -tetrabenzyloxycalix[4]arene (5b). ¹H and ¹³C NMR analysis reveals that the phosphines (5a-b) and the tetra-O-substituted phosphine oxides (3a-b) adopt 1,3-alternate conformation, while the parent tetrahydroxy-(2) and the di-O-propylated phosphine oxide (4) adopt cone-conformation. The X-ray structure indicates that the calix[4]arene moieties in 4 a pinched-cone conformation in solid state. Complexation of the phosphine ligand (5a) with [RuCl₂(p-cymene)]₂ affords the tetranuclear complexes, [{RuCl₂(p-cymene)}₂ · 5a] (6), as 1,3-alternate conformer.     

Synthesis, characterization, crystal structures and photophysical properties of copper(I) complexes containing 1,1′-bis(diphenylphosphino)ferrocene (B-dppf) in doubly-bridged mode

Five copper(I) complexes having general formula [Cu₂(μ-X)₂(κ²-P,P-B-dppf)₂] (X = Cl(1), Br(2), I(3), CN(4), and SCN(5)) were prepared starting with CuX and B-dppf in 1:1 molar ratio in DCM-MeOH (50:50 V/V) at room temperature. The complexes have been characterized by elemental analyses, IR, ¹H NMR, ³¹P NMR and electronic spectral studies. Molecular structures for 1, 2 and 4 were determined crystallographically. Complexes 1, 2 and 4 exist as centrosymmetric dimers in which the two copper atoms are bonded to two bridging B-dppf ligands and two bridging (pseudo-)halide groups in a μ-η¹ bonding mode to generate nearly planar Cu₂(μ-η¹-X)₂ framework. Both bridging B-dppf ligands are arranged in antiperiplanar staggered conformation in 1 and 2 (mean value 56.40-56.76°), and twisted from the eclipsed conformation (mean value 78.19°) in 4. The Φ angle value in 4 is relatively larger as compared to 1 and 2. This seems to indicate that the molecular core [Cu₂(μ-η¹-X)₂] in 4 is a sterically demanding system that forces the B-dppf ligand to adopt a relatively strained conformation in comparison to less strained system in 1 and 2. All the complexes exhibit moderately strong luminescence properties in the solution state at ambient temperature.     

Reactions of alkyl- and aryl(ferrocenyl)phosphines with 2,3-dichloro-5,6-dicyano-1,4-benzoquinone

Reaction of diphenyl(ferrocenyl)phosphine (1), tri(ferrocenyl)phosphine (2) and ^tbutyl(diferrocenyl)phosphine (3) with one equivalent of 2,3-dichloro-4,5-dicyano-1,4-benzoquinone (DDQ) yields FcPPh₂ • DDQ (4), Fc₃P • DDQ (5) and Fc₂P^tBu • DDQ (6), respectively. Infrared, UV-Vis and ESR spectra of 4-6 are consistent with formation of DDQ⁻ Mössbauer spectroscopy, however, reveals that 4-6 all contain low spin Fe^II suggesting that the radical cation is ligand centered rather than iron centered.     

β-Diketiminato 3d-metal compounds: Synthesis, characterization and catalytic behavior towards ethylene

The lithium β-diketiminate (1c, [Li{N(2,6-ⁱPr₂C₆H₃)C(Ph)CHC(^tBu)NH}]₂ represented as (LiL)₂) reacted with 3d-metal (II) chlorides to afford the corresponding compounds (2-7). All metal compounds were fully characterized by elemental, spectroscopic analyses and the single-crystal X-ray diffraction. The coordination geometries around the metals are shown to be tetrahedral within the trinuclear Co₂Li compound (2), planar in ML₂ (M = Co, 3), pseudo-tetrahedral conformation in the ML₂ with M as Mn (4), Fe (5) or Zn (6), and square planar in the dinickel compound (7). Indicated by the trimetallic Co₂Li compound 2, a six-membered ring is constructed of three metal atoms and three bridged chlorides as a twisted conformation. An inversion center is present in the centroid of the Ni₂Cl₂ four-membered ring within compound 7. The plausible mechanism of forming ML₂ was proposed through the chloro-bridged multinuclear compounds on the basis of isolated intermediates of trinuclear (2) and dinuclearic (7) compounds. Upon treatment with methylaluminoxane (MAO), the nickel compound 7 possessed good activity towards ethylene oligomerization, whereas the other metal compounds showed moderate activities towards ethylene polymerization.     

Synthesis of Fe(II) and Cu(II) building blocks for metal-organic frameworks

In situ reaction of the aminobenzoic acids 2-aminobenzoic acid and 3,5-diaminobenzoic acid with salicylaldehyde provide easy access to the ligands 2-[{(2-hydroxyphenyl)methylene}amino]benzoic acid (L1) and 3,5-bis[{(2-hydroxyphenyl)methylene}amino]benzoic acid (L2). Addition of a Fe(II) or Cu(II) salt to the solution of the ligand yields the corresponding Fe and Cu complexes. The species synthesized have been structurally characterized by single-crystal X-ray diffraction. The Fe(II) complex [Fe(L1)(MeOH)₃] (1) crystallizes in the triclinic space group . The Cu(II) complex [Cu(L1)] (2) is a one-dimensional chain and crystallizes in the monoclinic space group P2₁. The Cu(II) complex [Et₃NH]₂[Cu₂(L2)₂] (3) crystallizes in the monoclinic space group P2₁/n. The magnetic properties of 1, 2 and 3 have been studied, showing that the Cu(II) ions of 2 and 3 are ferromagnetically coupled. Complexes 1 and 3 have strong potential as metal-bearing building blocks for the synthesis of metal-organic frameworks.     

Strukturanalyse der methyl-2,3,6-tridesoxy-2-C-[2-hydroxy-1,1-(Äthylendithio)Äthyl]-α-l-threo-hexopyranosid-4-ulo-22,4-pyranose

Methyl 2,3,6-trideoxy-2-C-[2-hydroxy-1,1-(ethylenedithio)ethyl]-α-l-threo-hexopyranosid-4-ulo-2²,4-pyranose (1) crystallizes in a rhombic space group P2₁2₁2₁ with four molecules in the elementary unit. The structure was refined to an R-value of 0.057. The aldopyranose ring adopts a ¹C₄ conformation with an axial side-chain forming a hemiacetal ring to the keto group at C-4. Both six-membered rings connected in the 2,7-dioxabicyclo[3.3.1]nonane system differ only slightly from the ¹C₄ chair conformation. The spirocyclic dithiolane ring adopts a nearly ideal envelope form with a deviation of C-21 from the plane S-1-C-7-S-2-C-22. The dihedral angle O-5-C-1 O-1-C-11 of 59.1° is an agreement with the exo-anomeric effect.     

Synthesis and structures of porphyrin complexes of scandium: ClSc(TTP)·2(C 10H 7Cl) and O[Sc(TTP)] 2·6THF

A facile, high yield metallation procedure is reported for the insertion of Sc into H ₂(TTP) (TTP= dianion of meso-tetratolylporphyrin) using anhydrous ScCl ₃. Single crystal X-ray structures are reported for ClSc(TPP)·2(C ₁₀H ₇Cl) ( 1) and O[Sc(TTP)] ₂·6THF ( 2). Compound 1: space group P2 ₁/c with a = 19.850(17), b = 28.822(24), c = 9.954(9)Å, β = 95.71(7)°, Z = 4; 2: space group P2/n, a = 16.952(9), b = 16.737(5), c = 19.93(1)Å, β = 112.56(5)°, Z = 4. Compounds 1 and 2 both had large amounts of poorly ordered solvents in the lattice which resulted in rather high R factors in the range of 12–14%. In 1, the Sc is five-coordinate (4N and 1Cl) and is centered 0.68Åabove the plane defined by the four porphyrin nitrogens. For 2, the Sc is 0.82Åfrom the plane and contains a non-linear μ-oxide bridge with a ScO Sc angle of 109(3)°, but with essentially coplanar porphyrin rings.     

π Delocalization in iridathiabenzenes

Fenske-Hall calculations were carried out for (PEt₃)₃Ir(C₇H₉) (1), [(PEt₃)₃Ir(C₆H₈S)]⁺ (2), [(S-t-but)(PEt₃)₂]Ir(C₆H₈S) (3), and [(S-t-but)(PMet₃)₃]Ir(C₆H₈S) (4) in order to compare the degree of π delocalization in the metallathiacycle rings of (2) and (3). In comparison to (1), a true iridabenzene and (4), an iridathiacyclobutadiene, the π ring systems in (2) and (3) are considerably more localized than the π system in (1) but are not totally localized. Strong metal-sulfur bonding in (2) disrupts the π ring system and results in some localization of the ring π bonds. The introduction of the donor thiolate ligand in (3) disrupts the ring of π system even more by destabilizing the metal orbitals used for metal-sulfur interactions. This weakens the metal-sulfur interaction seen in (2) and leads to even more localization of the ring π system in (3).     

3D azido-bridged cobalt(II) complexes with diazines as coligands

Two new three-dimensional azido-bridged Co(II) compounds with formula [Co(N₃)₂(2,5-Me₂pyz)]_n (1) and [Co(N₃)₂(2-ampym)]_n (2) have been structurally and magnetically characterized. 2,5-Me₂pyz and 2-ampym are 2,5-dimethylpyrazine and 2-aminopyrimidine, respectively. Compound 1 crystallizes in the monoclinic system with space group P2₁/c and compound 2 in the orthorhombic system with space group Pnma. In 1 and 2 each cobalt atom is linked to the four nearest-neighbors by end-to-end (EE) azido bridges, forming square layers. These layers are further connected to 3D networks by the N,N′-bridging ligands 2,5-dimethylpyrazine or 2-aminopyrimidine. The magnetic properties of 1 and 2 are reported. The plots of χ_M or χ_MT for 1 and 2 show antiferromagnetic coupling.     

Characterization of the copper(II) binding site in the pink copper binding protein CusF by electron paramagnetic resonance spectroscopy

Electron paramagnetic resonance (EPR) spectroscopy has been used to structurally characterize the copper-binding site in CusF protein from Escherichia coli. The EPR spectra indicate a single type II copper center with parameters typical for nitrogen and oxygen ligands (A~200 G, g~2.186, g~2.051). The pulsed EPR data show that one of the ligands to Cu²⁺ is an imidazole ring of a histidine residue. The remote amino nitrogen of this imidazole ring is readily observed by electron spin-echo envelope modulation spectroscopy, while the imino nitrogen that is directly coordinated to the Cu²⁺ ion is observed by pulsed electron–nuclear double resonance (ENDOR). In addition, the ENDOR spectra reveal the presence of one more nitrogen ligand that was assigned to be a deprotonated peptide nitrogen. Apart from the two nitrogen ligands, it has been established that there are two nearby hydroxyl protons, although whether these belong to a single equatorial water ligand or two equatorial hydroxide ligands is not known.

The synthesis of polyoxygenated, enantiomerically pure cyclopentane derivatives on route to neplanocin A stereoisomers via alkylidenecarbene species prepared from sugar templates

Our new method for the generation of alkylidenecarbenes, based on the reaction of trimethylsilylazide/Bu₂SnO with α-cyanomesylates, has been applied to the synthesis of enantiomerically pure polyhydroxylated cyclopentane derivatives from conveniently functionalized sugar intermediates prepared from d-mannose. The stereoselectivity of the 1,5 C–H insertion reaction leading to the major trans-isomers (8a,b) has been assigned by ¹H RMN spectroscopic data, and correctly rationalized by a computational analysis at DFT level. Compounds 8a and 8b have been designed as suitable intermediates for the synthesis of neplanocin A enantiomer.     

Crystal structure of six and seven coordinate manganese(II) complexes with penta and hexadentate pyridylmethyl ligands

Two six-coordinated manganese(II) complexes [Mn(pydien)Cl](ClO₄) · C₂H₅OH (1), [Mn(pydien)NCS](ClO₄) (2) and two seven-coordinated manganese(II) complexes [Mn(pydado)Cl](ClO₄) (3), [Mn(pydado)NCS](ClO₄) (4) have been obtained using linear penta and hexadentate ligands pydien and pydado (pydien: 1,7-bis(2-pyridylmethyl)-1,4,7-triazaheptane and pydado: 1,10-bis(pyridylmethyl)-1,10-diaza-4,7-dioxadecane). The crystal structures for all compounds have been determined. 1 and 3 crystallize in the triclinic space group , 2 crystallizes in the orthorhombic space group Pbca, whereas 4 crystallizes in the monoclinic space group P2₁/c. The bound anion (chloro or isothiocyanato) in complexes 1 and 2 has no influence on the geometry of six-coordinate manganese(II) complexes, whereas the geometry and the wrapping of the hexadentate ligand (pydado) around Mn²⁺ cation depend on the nature of the bound anion. The complex 3 has a capped octahedron geometry with the two pyridyl groups in trans position, while the geometry of complex 4 can be described as pentagonal bipyramid with one pyridyl group and a thiocyanate anion in the axial positions.