Plant-mediated interactions between the rice water weevil and fall armyworm in rice

Greenhouse studies were conducted to investigate plant-mediated interactions between an above-ground and a below-ground herbivore when sharing a common host plant, rice (Oryza sativa L). Two common pests of rice were used: the rice water weevil (RWW), Lissorhoptrus oryzophilus Kuschel, as the root herbivore, and the fall armyworm (FAW), Spodoptera frugiperda (J. E. Smith) as the foliage-feeding herbivore. Rice water weevil larval performance was assessed by measuring larval density and average weight in response to different levels of defoliation by FAW larvae. The reciprocal experiment was done to evaluate FAW performance (growth rate) in response to RWW feeding. Severe defoliation by FAW decreased RWW densities by 32% and reduced larval weights by 48% compared to larvae on roots of non-defoliated plants. Effects in the converse experiments were not as strong. FAW growth rates were reduced 9–37% when feeding on rice leaves from plants damaged by RWW compared to larvae feed leaves from the no damage treatment. These reciprocal negative effects show that RWW and FAW are potential competitors when sharing a rice plant. Because RWW and FAW did not interact directly, competition was plant-mediated.     

Acquired resistance to the rice blast in transgenic rice accumulating the antimicrobial peptide thanatin

Thanatin is an antimicrobial peptide with a strong and wide-ranging antimicrobial spectrum, including certain species of fungi and Gram-negative and Gram-positive bacteria. To evaluate the application of thanatin to the generation of disease-resistant plants, we introduced a synthetic thanatin gene into rice. Several transformants that expressed the introduced gene showed significant level of antimicrobial activity. The substances showing antimicrobial activity were partially purified from these transformants and their properties were determined. The molecule with characteristics similar to those of native thanatin on the elution pattern in HPLC analysis had an identical molecular mass to that of native molecule. It should also be noted that the transformant acquired a sufficient level of resistance to the rice blast fungus, Magnaporthe oryzae, presumably due to the repressive activity of thanatin to its initial stage of infection. This result demonstrates that thanatin has antifungal activity for M. oryzae and that the introduction of the thanatin gene into rice is effective in generating a plant resistant to rice blast disease.     

田埂留草控制稻飞虱效果及对捕食性天敌多样性影响

为探讨稻田田埂保留杂草控制稻飞虱的效果及对捕食性天敌多样性的影响,以稻田田埂周年性保留杂草为处理,以稻田田埂不保留杂草为对照,对处理区和对照区稻田稻飞虱成若虫、捕食性天敌种类和数量进行系统调查和分析。结果表明,在调查期内(6—10月),田埂留草稻田百丛稻株稻飞虱数量为(891.11±133.12)头,较非留草稻田减少35.31%;田埂留草稻田捕食性天敌隶属5目23科35种,而田埂非留草稻田隶属5目21科33种;田埂非留草稻田捕食性天敌优势种为食虫沟瘤蛛Ummeliata insecticepsBoes.etStr.、拟水狼蛛Pirata subpiraticus Boes.etStr.和黑肩绿盲蝽Cyrtorrhinus livdipennis Reuter,而田埂留草后优势种为食虫沟瘤蛛U.insecticeps、草间小黑蛛Erigonidium graminicolum(Sundevall)、拟水狼蛛和拟环纹狼蛛Lycosa pseudoamulata(Bose.etStr.);田埂留草稻田捕食性天敌的个体数量、丰富度、多样性指数分别为(128.89±13.52)、(33.67±0.50)、(4.53±0.04)头/百丛,较田埂非留草稻田分别增加31.96%、25.73%、5.59%,而优势度指数和均匀性指数没有显著变化。研究结果为发展稻田景观多样化控害提供依据。     

Anchoring of rice BAC clones to the rice genetic map in silico

A wealth of molecular resources have been developed for rice genomics, including dense genetic maps, expressed sequence tags (ESTs), yeast artificial chromosome maps, bacterial artificial chromosome (BAC) libraries and BAC end sequence databases. Integration of genetic and physical maps involves labor-intensive empirical experiments. To accelerate the integration of the bacterial clone resources with the genetic map for the International Rice Genome Sequencing Project, we cleaned and filtered the available EST and BAC end sequences for repetitive sequences and then searched all available rice genetic markers with our filtered databases. We identified 418 genetic markers that aligned with at least one BAC end sequence with >95% sequence identity, providing a set of large insert clones with an average separation of 1 Mb that can serve as nucleation points for the sequencing phase of the International Rice Genome Sequencing Project.     

Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA

The Pi-ta gene in rice has been effectively used to control rice blast disease caused by Magnaporthe oryzae worldwide. Despite a number of studies that reported the Pi-ta gene in domesticated rice and wild species, little is known about how the Pi-ta gene has evolved in US weedy rice, a major weed of rice. To investigate the genome organization of the Pi-ta gene in weedy rice and its relationship to gene flow between cultivated and weedy rice in the US, we analyzed nucleotide sequence variation at the Pi-ta gene and its surrounding 2 Mb region in 156 weedy, domesticated and wild rice relatives. We found that the region at and around the Pi-ta gene shows very low genetic diversity in US weedy rice. The patterns of molecular diversity in weeds are more similar to cultivated rice (indica and aus), which have never been cultivated in the US, rather than the wild rice species, Oryza rufipogon. In addition, the resistant Pi-ta allele (Pi-ta) found in the majority of US weedy rice belongs to the weedy group strawhull awnless (SH), suggesting a single source of origin for Pi-ta. Weeds with Pi-ta were resistant to two M. oryzae races, IC17 and IB49, except for three accessions, suggesting that component(s) required for the Pi-ta mediated resistance may be missing in these accessions. Signatures of flanking sequences of the Pi-ta gene and SSR markers on chromosome 12 suggest that the susceptible pi-ta allele (pi-ta), not Pi-ta, has been introgressed from cultivated to weedy rice by out-crossing.     

Mechanisms of resistance in the rice cultivar Manikpukha to the rice stem nematode Ditylenchus angustus

The incompatible interaction between the rice cultivar Manikpukha and the rice stem nematode Ditylenchus angustus has been reported recently. This research focuses on the underlying mechanisms of resistance in Manikpukha. Invasion, post‐infection development and reproduction of D. angustus were compared in compatible and incompatible interactions to identify the stage in which resistance occurs. The results indicate that resistance in Manikpukha is associated with reduced development and reproduction, implying that resistance acts post‐invasion. We studied the possible involvement of three classical defence hormones, salicylic acid (SA), jasmonic acid (JA) and ethylene (ET), in response to infection in a compatible interaction using biosynthesis/signalling‐deficient transgenic rice lines. All three hormones appear to have an influence on the basal defence of Nipponbare against the stem nematode. Although hormone application increases basal defences, expression studies and hormone analyses after nematode infection in Manikpukha did not show a clear involvement of the hormone defense pathways for SA, ET and JA. However, it seems that OsPAL1 plays a pivotal role in resistance, indicating that the phenylpropanoid pathway and its products might be key players in the incompatible interaction. Lignin measurement showed that, although basal levels are similar, Manikpukha had a significantly higher lignin content on nematode infection, whereas it was decreased in the susceptible cultivar. The results presented here show that SA, ET and JA are involved in basal defences, but the resistance of Manikpukha against D. angustus probably relies on products of the phenylpropanoid pathway.     

Thermotolerance in rice

Science China Life Sciences -     

Branching in rice

Rice branching, including the formation of tillers and panicle branches, has been well investigated over the past several years because of its agronomic importance. A major breakthrough in elucidating rice tillering in the recent years was the discovery of strigolactones, a specific group of terpenoid lactones that can inhibit axillary bud outgrowth. Since that discovery, new tillering mutants, that is, dwarf 27 (d27) or dwarf14 (d14, also reported as d88 or htd2), have been identified with reduced strigolactone levels or strigolactone response. DWARF27 (D27) and DWARF14 (D14) probably act on strigolactone biosynthesis and signal transduction, respectively. Additionally, several genes controlling panicle branches have been identified recently. DEP1 and IPA1/WFP are essential dominant/semidominant regulators that determine rice panicle branches and thus affect the grain yields. More importantly, dep1 and ipa1 alleles have been shown to be applicable for the improvement of rice grain yields in molecular breeding.     

Recent advances in rice biotechnology--towards genetically superior transgenic rice

Rice biotechnology has made rapid advances since the first transgenic rice plants were produced 15 years ago. Over the past decade, this progress has resulted in the development of high frequency, routine and reproducible genetic transformation protocols for rice. This technology has been applied to produce rice plants that withstand several abiotic stresses, as well as to gain tolerance against various pests and diseases. In addition, quality improving and increased nutritional value traits have also been introduced into rice. Most of these gains were not possible through conventional breeding technologies. Transgenic rice system has been used to understand the process of transformation itself, the integration pattern of transgene as well as to modulate gene expression. Field trials of transgenic rice, especially insect-resistant rice, have recently been performed and several other studies that are prerequisite for safe release of transgenic crops have been initiated. New molecular improvisations such as inducible expression of transgene and selectable marker-free technology will help in producing superior transgenic product. It is also a step towards alleviating public concerns relating to issues of transgenic technology and to gain regulatory approval. Knowledge gained from rice can also be applied to improve other cereals. The completion of the rice genome sequencing together with a rich collection of full-length cDNA resources has opened up a plethora of opportunities, paving the way to integrate data from the large-scale projects to solve specific biological problems.     

Population dynamics of the rice root nematode Hirschmanniella oryzae on monsoon rice in Myanmar

Soil and root samples of the short crop cycle duration rice variety Yadanartoe were collected at 10-days intervals, starting at 20 days after transplanting until 20 days after harvest, from September 2008 until January 2009, to study the population dynamics of Hirschmanniella oryzae on (rainfed) monsoon rice. Plant growth stages, the ambient air and soil temperature, rainfall and relative humidity during the sampling period were noted. The soil type is clay and has a pH of 5.1. In the roots, three nematode population density peaks were observed during the sampling period: at the maximum tillering stage, at the milky grain stage, and between harvest and 10 days after harvest. The highest peak (483 H. oryzae/g roots) was observed at the milky grain stage. The lowest root population density (46 H. oryzae/g roots) was found at harvesting. Population densities in the soil followed more or less the same trend as in the roots. After harvesting, the soil population density increased. During our observation, we did not find any effects of environmental conditions on the population densities of H. oryzae. However, it was found that the population dynamics of H. oryzae were influenced by the plant growth stage.     

Decoding the rice genome

Rice cultivation is one of the most important agricultural activities on earth, with nearly 90% of it being produced in Asia. It belongs to the family of crops that includes wheat, maize and barley, and it supplies more than 50% of calories consumed by the world population. Its immense economic value and a relatively small genome size makes it a focal point for scientific investigations, so much so that four whole genome sequence drafts with varying qualities have been generated by both public and privately funded ventures. The availability of a complete and high-quality map-based sequence has provided the opportunity to study genome organization and evolution. Most importantly, the order and identity of 37,544 genes of rice have been unraveled. The sequence provides the required ingredients for functional genomics and molecular breeding programs aimed at unraveling intricate cellular processes and improving rice productivity.     

Computational identification of protein-protein interactions in rice based on the predicted rice interactome network

Plant protein-protein interaction networks have not been identified by large-scale experiments. In order to better understand the protein interactions in rice, the Predicted Rice Interactome Network (PRIN; http://bis.zju.edu.cn/prin/) presented 76,585 predicted interactions involving 5,049 rice proteins. After mapping genomic features of rice (GO annotation, subcellular localization prediction, and gene expression), we found that a well-annotated and biologically significant network is rich enough to capture many significant functional linkages within higher-order biological systems, such as pathways and biological processes. Furthermore, we took MADS-box domain-containing proteins and circadian rhythm signaling pathways as examples to demonstrate that functional protein complexes and biological pathways could be effectively expanded in our predicted network. The expanded molecular network in PRIN has considerably improved the capability of these analyses to integrate existing knowledge and provide novel insights into the function and coordination of genes and gene networks.     

水稻颖壳颜色的研究及进展

水稻是世界上一半以上人口的主食,对于我国乃至世界的粮食安全具有举足轻重的作用。颖壳是水稻的重要花器官结构,主要由内、外稃组成。目前最常见颖壳颜色为黄色,而黑色、金黄色、褐色等较为少见,研究表明这主要是由于类黄酮的积累不同导致的。通过分析水稻黑色颖壳性状的遗传机制,并以当前报道的两种异常颖壳(金黄壳、褐壳)突变体为对象,解析了相应颜色颖壳的呈色机理;阐述了类黄酮生物合成基因对颖壳颜色的影响,为剖析水稻颖壳的色素沉积模式提供理论参考;对有色稻壳的应用前景做了分析,为观赏稻的选育指明了方向。