Electronic structure of polysilole and related compounds

The electronic structures, in the optimized geometries, of polysilacyclopentadiene (polysilole), polygermacyclopentadiene, and silole-thiophene alternating copolymer, have been studied theoretically using the one-dimensional tight-binding self-consistent field crystal orbital (SCF-CO) method. It has been found that the band gap values of these polymers are slightly smaller than those of the ordinary five-membered polyheterocycles such as polythiophene. The larger -polarized nature between the Group IV atom and the carbon atom might be expected to exhibit a different behaviour, compared with polythiophene, when they are doped with ann-type dopant.     

Theoretical study of the electronic structure and conformation of polysilole and its derivatives

The electronic structures and conformations in the optimized geometries of polysilole and its derivatives are studied theoretically, using the one-dimensional tight-binding self-consistent field crystal orbital (SCF-CO) method. It has been found that the copolymer formed by alternating aromatic silole and quinoid thiophene has a relatively small bandgap value. We observe that polysilole may show an interesting thermochromic behavior, because the conformation of polysilole is considerably easier to change at lower temperature than that of polythiophene.     

Electronic and spatial structure of dimethyl orthophosphate and orthophosphate

The applicability of different variants of the semiempirical CNDO method to calculate the electronic structure of different conformations of all possible ionic forms of dimethyl orthophosphate and orthophosphate is considered. The CNDO/BW (Boyd-Whitehead parameterization) approximation with selected parameters for the P-O bond is shown to provide the best qualitative and sometimes quantitative agreement with ab initio methods. The dependences of energy and P-O bond strengths in P-O-CH₃ (P-O-H) groups on torsion angles at P-O bonds are obtained in this approximation for dimethyl orthophosphate and orthophosphate. The rotation of these groups is found to stremgthen one P-O bond stronger and labilize another. The energy minima of dimethyl orthophosphate and orthophosphate anions are shown to correspond to conformations where the strengths of the studied P-O bonds are almost the same, i.e., none of the bonds is weakened to a minimum. Protonation of these compounds increases the strength of P-O bonds and decreases the dependence of bond strength on torsion angles. The di-and trianions of dimethyl orthophosphate and orthophosphate are also studied. The growth of negative charge is shown to progressively weaken the P-O bond. The dependence of bond strength on torsion angle for the dianion is less pronounced than that for the monoanion. Calculation results are compared with experimental data known from literature. The significance of the data obtained for revealing essential features of the enzyme cleaving and forming the P-O bond is discussed.     

Electronic structure and molecular design of simplified polyimide systems

The electronic structures of newly designed polyimide systems (ethenetetracarboxylic 1,2:1,2-dianhydride-diaminoethyne (PI-A) and ethenetetracarboxylic 1,1:2,2-dianhydride-diaminoethyne(PI-B)) are studied in detail with respect to their optimized geometries on the basis of the one-dimensional tight-binding self-consistent field crystal-orbital method. The computational results have revealed that PI-B shows intriguing properties such as a very small band gap and a wide bandwidth near the frontier level, compared with PI-A and other polyimides. Since PI-B would be a promising candidate for a new electric conducting material, a reaction diagram for this polymer is also proposed.Also affiliated to Central Research Laboratories, Matsushita Electric Industrial Co., Moriguchi 570, Japan.     

Electronic structure and polarizabilities of some heterocycles: I. Hydroxypyrazoles and related systems

The (hyper)polarizabilities of different tautomer forms of hydroxypyrazoles and pyrazolones have been calculated by the finite-field procedure in the MNDO approximation and the sum of states formalism in the PPP approximation, with all singly- and doubly-excited electronic configurations in the CI method. It was shown that while in the ground electronic state the values of the (hyper) polarizabilities are not essentially different, in the first excited singlet Franck-Condon state an increase of the molecular polarizabilities of some tautomers is observed. This increase is attributed to a specific change in the electronic structure of the excited state, demonstrated by the localization of the electronic transition in the different pyrazolone tautomers. The electron-donor capabilities of phenyl-substituted hydroxypyrazoles and pyrazolones are discussed.     

Electronic structure and reaction mechanism as guides to the design of hybrid inorganic-organic polymers

Systematic approaches to the design of organofunctional cyclophosphazene monomers and their conversion to organic backbone polymers with cyclophosphazene substituents are described. A variety of methods including DFT calculations, photoelectron spectroscopy and copolymerization reactivity ratios show that the π electrons in an olefin attached to a cyclophosphazene undergo σ polarization towards the phosphazene. This effect may be mediated by electron donors on the olefin or, more effectively, by an insulating function between the olefin and the inorganic ring. Two optimized monomers, P₃N₃Cl₅OR (RC₆H₄CHCH₂, (CH₂)₄OC (O)CMeCH₂), have been prepared and their homo- and copolymerization behavior explored. Mixed phosphazene substituent systems have also been developed. Per substituted monomers, P₃N₃(OR)₆, have been developed and converted to cross linked, hyperbranched and cyclomatrix materials via multi arm polymerization.     

Electronic structural investigations of ruthenium compounds and anticancer prodrugs

Several Ru^III compounds are propitious anticancer agents although the precise mechanisms of action remain unknown. With this paper we start to establish an experimental library of X-ray absorption spectroscopy (XAS) data for ten Ru compounds wherein the ligands [Cl⁻, dimethyl sulfoxide, imidazole, and indazole] were varied systematically to provide electronic structural information for future use in correlating spectroscopic signatures with chemical properties. Despite the considerable difference in the coordination environments of the complexes studied, the overall differences in spectral features and electronic structures calculated using density functional theory are unexpectedly small. However, the differences in the electronic structure of the Ru^III prodrugs KP1019 ([IndH][trans-RuCl₄(Ind)₂], Ind is indazole) and ICR ([ImH][trans-RuCl₄(Im)₂], Im is imidazole) observed in the XAS data show correlation with known chemical and biological activities in addition to the donor abilities of imidazole compared with indazole and reduction potentials of the complexes. These semiquantitative results lay the groundwork for future biochemical studies into the structure–function relationships of Ru-based anticancer drugs. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

The structure of an archaeal pilus

Bacterial pili are involved in a host of activities, including motility, adhesion, transformation, and immune escape. Structural studies of these pili have shown that several distinctly different classes exist, with no common origin. Remarkably, it is now known that the archaeal flagellar filament appears to have a common origin with the bacterial type IV pilus, and assembly in both systems involves hydrophobic N-terminal α-helices that form three-stranded coils in the center of these filaments. Recent work has identified further genes in archaea as being similar to bacterial type IV pilins, but the function or structures formed by such gene products was unknown. Using electron cryo-microscopy, we show that an archaeal pilus from Methanococcus maripaludis has a structure entirely different from that of any of the known bacterial pili. Two subunit packing arrangements were identified: one has rings of four subunits spaced by ∼ 44 Å and the other has a one-start helical symmetry with ∼ 2.6 subunits per turn of a ∼ 30 Å pitch helix. Remarkably, these schemes appear to coexist within the same filaments. For the segments composed of rings, the twist between adjacent rings is quite variable, while for the segments having a one-start helix there is a large variability in both the axial rise and the twist per subunit. Since this pilus appears to be assembled from a type IV pilin-like protein with a hydrophobic N-terminal helix, it provides yet another example of how different quaternary structures can be formed from similar building blocks. This result has many implications for understanding the evolutionary divergence of bacteria and archaea.     

Electronic Structure Engineering of LiCoO2 toward Enhanced Oxygen Electrocatalysis

Developing low‐cost and efficient electrocatalysts for the oxygen evolution reaction and oxygen reduction reaction is of critical significance to the practical application of some emerging energy storage and conversion devices (e.g., metal–air batteries, water electrolyzers, and fuel cells). Lithium cobalt oxide is a promising nonprecious metal‐based electrocatalyst for oxygen electrocatalysis; its activity, however, is still far from the requirements of practical applications. Here, a new LiCoO₂‐based electrocatalyst with nanosheet morphology is developed by a combination of Mg doping and shear force‐assisted exfoliation strategies toward enhanced oxygen reduction and evolution reaction kinetics. It is demonstrated that the coupling effect of Mg doping and the exfoliation can effectively modulate the electronic structure of LiCoO₂, in which Co³⁺ can be partially oxidized to Co⁴⁺ and the Co–O covalency can be enhanced, which is closely associated with the improvement of intrinsic activity. Meanwhile, the unique nanosheet morphology also helps to expose more active Co species. This work offers new insights into deploying the electronic structure engineering strategy for the development of efficient and durable catalysts for energy applications.     

A predator prey model with age structure

A general predator-prey model is considered in which the predator population is assumed to have an age structure which significantly affects its fecundity. The model equations are derived from the general McKendrick equations for age structured populations. The existence, stability and destabilization of equilibria are studied as they depend on the prey's natural carrying capacity and the maturation periodm of the predator. The main result of the paper is that for a broad class of maturation functions positive equilibria are either unstable for smallm or are destabilized asm decreases to zero. This is in contrast to the usual rule of thumb that increasing (not decreasing) delays in growth rate responses cause instabilities.Research supported by National Science Foundation Grant No. MCS-7901307-01Research supported by National Scholarship for Study Abroad No. EDN/S-59/80 from the government of India     

Tuning Electronic Structure of NiFe Layered Double Hydroxides with Vanadium Doping toward High Efficient Electrocatalytic Water Oxidation

Binary NiFe layer double hydroxide (LDH) serves as a benchmark non‐noble metal electrocatalyst for the oxygen evolution reaction, however, it still needs a relatively high overpotential to achieve the threshold current density. Herein the catalyst's electronic structure is tuned by doping vanadium ions into the NiFe LDHs laminate forming ternary NiFeV LDHs to reduce the onset potential, achieving unprecedentedly efficient electrocatalysis for water oxidation. Only 1.42 V (vs reversible hydrogen electrode (RHE), ≈195 mV overpotential) is required to achieve catalytic current density of 20 mA cm^?2 with a small Tafel slope of 42 mV dec^?1 in 1 m KOH solution, which manifests the best of NiFe‐based catalysts reported till now. Electrochemical analysis and density functional theory +U simulation indicate that the high catalytic activity of NiFeV LDHs mainly attributes to the vanadium doping which can modify the electronic structure and narrow the bandgap thereby bring enhanced conductivity, facile electron transfer, and abundant active sites.     

Effects of polyhydroxy compounds on the structure and activity of alpha-chymotrypsin

The effects of glycerol, polyethylene glycol, fructose, glucose, sorbitol, and saccharose on the conformation and catalytic activity of alpha-chymotrypsin were studied in 0.1 M sodium phosphate buffer and buffered aqueous 60% ethanol (pH 8.0). The enzyme activity was practically completely lost within 10 min in 60% ethanol, but in the presence of stabilizers the activity was retained. With the exception of polyethylene glycol, the stabilizing effect decreased with increase of the incubation time. The preservation of the catalytic activity was accompanied by changes in the secondary and tertiary structures of alpha-chymotrypsin.     

Electronic Medical Records and Electronic Health Records: Overview for Nurse Practitioners

Electronic medical records (EMRs) and electronic health records (EHRs) have become essential systems by which nurse practitioners (NPs) communicate vital patient information to other members of the health care team as well as to patients. In this article we examine the important distinctions between EMRs and EHRs; review the genesis of these types of records; summarize applicable provisions of the Health Insurance Portability and Accountability Act from a recent legal case centered around NP utilization of EMRs and EHRs; address open patient access to medical information; and examine threats to security. Suggestions are offered on ways in which NPs can safeguard confidential patient information.     

Predicting RNA 3D structure using a coarse-grain helix-centered model

A 3D model of RNA structure can provide information about its function and regulation that is not possible with just the sequence or secondary structure. Current models suffer from low accuracy and long running times and either neglect or presume knowledge of the long-range interactions which stabilize the tertiary structure. Our coarse-grained, helix-based, tertiary structure model operates with only a few degrees of freedom compared with all-atom models while preserving the ability to sample tertiary structures given a secondary structure. It strikes a balance between the precision of an all-atom tertiary structure model and the simplicity and effectiveness of a secondary structure representation. It provides a simplified tool for exploring global arrangements of helices and loops within RNA structures. We provide an example of a novel energy function relying only on the positions of stems and loops. We show that coupling our model to this energy function produces predictions as good as or better than the current state of the art tools. We propose that given the wide range of conformational space that needs to be explored, a coarse-grain approach can explore more conformations in less iterations than an all-atom model coupled to a fine-grain energy function. Finally, we emphasize the overarching theme of providing an ensemble of predicted structures, something which our tool excels at, rather than providing a handful of the lowest energy structures.     

Heteronuclear 2D (1H-13C) MAS NMR Resolves the Electronic Structure of Coordinated Histidines in Light-Harvesting Complex II: Assessment of Charge Transfer and Electronic Delocalization Effect

In a recent MAS NMR study, two types of histidine residues in the light-harvesting complex II (LH2) of Rhodopseudomonas acidophila were resolved: Type 1 (neutral) and Type 2 (positively charged) (Alia et al. J. Am. Chem. Soc. ). The isotropic (13)C shifts of histidines coordinating to B850 BChl a are similar to fully positively charged histidine, while the (15)N shift anisotropy shows a predominantly neutral character. In addition the possibility that the ring currents are quenched by overlap in the superstructure of the complete ring of 18 B850 molecules in the LH2 complex could not be excluded. In the present work, by using two-dimensional heteronuclear ((1)H-(13)C) dipolar correlation spectroscopy with phase-modulated Lee-Goldburg homonuclear (1)H decoupling applied during the t(1) period, a clear and unambiguous assignment of the protons of histidine interacting with the magnesium of a BChl a molecule is obtained and a significant ring current effect from B850 on the coordinating histidine is resolved. Using the ring current shift on (1)H, we refine the (13)C chemical shift assignment of the coordinating histidine and clearly distinguish the electronic structure of coordinating histidines from that of fully positively charged histidine. The DFT calculations corroborate that the coordinating histidines carry approximately 0.2 electronic equivalent of positive charge in LH2. In addition, the data indicate that the ground state electronic structures of individual BChl a /His complexes is largely independent of supermolecular pi interactions in the assembly of 18 B850 ring in LH2.     

Electronic energy band structure of uniaxially deformed (5,5) armchair carbon nanotube

Semiempirical molecular orbital calculations of the (5,5) armchair carbon nanotube give the Kekule structure in its ground state with two essentially different bonds (the bond lengths difference is 0.003 nm). This is a result of the Peierls distortions leading to tripled (compared with undistorted case) translational period. When the armchair nanotube is elongated, two first order deformational structural phase transitions are predicted. The first one at the elongation of 5% leads to doubling of a translational period (instead of tripling at smaller elongations). The second one at the elongation of 13% leads to the quinoid type structure. The dependence of the electronic energy-band structure of the (5,5) carbon nanotube on elongation is investigated using the tight binding approximation. The transition from narrow-gap semiconductor to metal is predicted at the elongation of 5%, indicating that the uniaxially deformed armchair carbon nanotube at greater elongation (more than 5%) remains metallic at all temperatures.     

Engineering Electronic Structure of Stannous Sulfide by Amino‐Functionalized Carbon: Toward Efficient Electrocatalytic Reduction of CO2 to Formate

Engineering electronic structure to enhance the binding energies of reaction intermediates in order to achieve a high partial current density can lead to increased yield of target products. Herein, amino‐functionalized carbon is used to regulate the electronic structure of tin‐based catalysts to enhance activity of CO₂ electroreduction. The hollow nanotubes composed of SnS (stannous sulfide) nanosheets are modified with amino‐functionalized carbon layers, achieving a highest formate Faraday efficiency of 92.6% and a remarkable formate partial current density of 41.1 mA cm^?2 (a total current density of 52.1 mA cm^?2) at a moderate overpotential of 0.9 V versus reversible hydrogen electrode, as well as a good stability. Density functional theory calculations demonstrate that the superior activity is attributed to the synergistic effect among SnS and Aminated‐C in increasing the adsorption energies of the key intermediates and accelerating the charge transfer rate.