The influence of ice conditions on terrestrial haulouts of the pacific walrus Odobenus rosmarus divergens Illiger, 1815 in the Gulf of Anadyr,Bering Sea

The boundaries of the area of appropriate depths for feeding by the Pacific walrus were determined. Based on the ice maps for the period of 1997–2011, the long-term dynamics of ice breakup and formation in the Gulf of Anadyr (Bering Sea) were analyzed. There was a tendency towards a reduction in the ice-cover period in the Gulf of Anadyr, especially during 2007–2011. In 2008, the number and duration of stay of walruses at terrestrial haulout sites on Meeskyn Spit Island and on Retkyn Spit continued to decrease. Walruses also used other haulouts located in the Gulf of Anadyr at Cape Gek and Cape Retkyn. The age and sex structure of the walrus herd changed: the proportions of adult males and young animals decreased, while the proportion of females with calves increased.     

Mitochondrial DNA Variation in Northwestern Bering Sea Walleye Pollock, Theragra chalcogramma (Pallas)

Genetic variability of the highly valuable gadid species, walleye pollock, Theragra chalcogramma (Pallas 1811), from five spatially separated northwestern Bering Sea areas (Ozernoi Bay, Olutorskyi Bay, Koryak shelf, Navarin region, and Anadyr Gulf) was investigated. Haplotype diversity within the samples ranged from 0.8788±0.0393 to 0.9436±0.0162. Nucleotide diversity within the samples ranged from 0.0108 to 0.0127. Nucleotide diversity among the regional collections ranged from 0% to 0.18%. Walleye pollock from the Anadyr Gulf appeared genetically separate from the other four samples in a clustering of genetic distances. Total heterogeneity among all five samples was significant, while there was no heterogeneity among the four samples excluding that from the Anadyr Gulf. Pair-wise comparisons using tests for heterogeneity and F_st supported the dendrogram of genetic distances in that only the collection from the Anadyr Gulf was significantly different from the others. The observed pattern of genetic differentiation among walleye pollock from the northwestern Bering Sea presumably emerged as a result of a population of the species subdividing in the northernmost part of its geographic range, though further analysis is needed to verify this supposition.     

Biology of round whitefish <Emphasis Type="Italic">Prosopium cylindraceum</Emphasis> (Coregonidae) of the Anadyr River

The recent state of the population of round whitefish Prosopium cylindraceum from the Anadyr River is described. Age composition of the catches of round whitefish remained almost without changes over the 35-year observation period. During this period, the proportion of large fishes (>380 mm in body length) slightly decreased, and the average body length of sexually mature individuals had become smaller. Possible reasons of interannual changes of the size-age composition of the catches and growth rate of the fish are discussed. A main factor determining growth variation of the fish is the abundance of chum salmon Oncorhynchus keta that migrated. The abundance of the round whitefish of the Anadyr River remains at a stable level (except the area of Markovo village) over a long time, and this population is hardly exploited.     

Movements of undersized spotted grunter (<Emphasis Type="Italic">Pomadasys commersonnii</Emphasis>) in the Great Fish Estuary,South Africa: implications for fisheries management

The purpose of this study was to test the hypothesis that an estuarine species as the spotted grunter Pomadasys commersonnii is evenly distributed within the estuary and uniformly exploited by different groups of fishers. This was done by investigating the movements and area use of spotted grunter in relation to the fisheries. The position of 20 acoustically tagged fish was recorded during 36 days in February and March 2003, by manual tracking and automated data logging receivers. Information on the fisheries in the estuary was collected through visual registration of fishing effort and interviews. The spotted grunter moved on average 1.0 km (SD ± 0.7) between positional fixes. Most of the fish were positioned in the lower part of the 12 km long estuary, as 70% of the positional fixes were within the first 3 km, and 89% within the first 6 km. Approximately half (49%) of all the fixes were between 1.0 and 1.5 km from the estuary mouth. The spotted grunter used on average 4.9 km (SD ± 4.9) of the length of the estuary, and there was no significant relationship between the length of the estuary used and the body length of the fish (26–39 cm TL). Subsistence fishers accounted for 73% of fishing lines in the water, while recreational fishers accounted for the rest. Ninety-three percent of the lines were recorded within the first 6 km from the estuary mouth, of which 80% were recorded within the first 3 km. Almost 1/3 of the fishing effort was recorded between 1.0 and 1.5 km from the mouth. The hypothesis that the estuarine dependent species spotted grunter was evenly distributed within the estuary was rejected. However, there was a significant relationship between the distribution of the fishing effort of the subsistence fishers and the fish, indicating that the spotted grunter was uniformly exploited within the estuary by this group of fishers. In contrast, there was no relationship between the distribution of fish and recreational anglers.     

Seasonal distribution and migrations of Pacific cod <Emphasis Type="Italic">Gadus macrocephalus</Emphasis> (Gadidae) in Anadyr Bay and adjacent waters

On the basis of bottom trawl surveys performed in Anadyr Bay and adjacent waters from 1979 to 2005 and data on commercial statistics, dates of migrations, and the spatial-bathymetric distribution of cod Gadus macrocephalus in different periods of the year are considered. Migrations of cod for feeding to Anadyr Bay begins in May. Its distribution in the summer period in the bay depends on the intensity and location of the Navarin Current and may noticeably vary from year to year. In September, back migration begins, and, by January, main cod aggregations leave the bay. From January to March, most cod winter and spawn beyond the studied area. The largest depths of cod habitation are typical for April (on average, 230 m), and minimal, for August (on average, 86 m).     

Distribution of the Beluga Delphinapterus leucas in the Anadyr Estuary in 2000

The results of stationary observations of the beluga Delphinapterus leucas Pall. 1776 conducted in Anadyr Estuary in 2000 were compared with literature and unpublished data. The belugas were found to occur in Anadyr Estuary almost throughout the ice-free period, from the first half of June until mid-November. The largest schools usually concentrated during the spawning migration of salmon in the bottleneck of Anadyr Estuary and in waters near the city of Anadyr.     

A new species of the genus <Emphasis Type="Italic">Sequoiadendron</Emphasis> Buchholz (Cupressaceae) from the Upper Cretaceous of the Enmyvaam River Basin,Central Chukotka

A new conifer species, Sequoiadendron tchucoticum A. Sokolova from the Emuneret Formation on the Enmyvaam River (Anadyr River Basin) is described. It is established based on a thorough study of the morphology and epidermal features of shoot impressions, using scanning electron microscopy. The new species has polymorphic shoots with helical branching and three main leaf types: scalelike, subulate, and falcate. Leaves are amphistomatic; amphicyclic stomata are mostly obliquely arranged; ordinary epidermal cells are rectangular, frequently with oblique end walls, and their length-to-width ratio reaches 15: 1. Shoots of the new species prevail among conifers of the Ust’-Emuneret Assemblage. The age of the deposits enclosing the assemblage is debated; according to the latest data, it is estimated as Santonian–Early Campanian.     

Fish larval supply to and within a lagoonal estuary: multiple sources for Barnegat Bay,New Jersey

We evaluated spatial variation in fish larval supply to a temperate, lagoon type estuary (Barnegat Bay, New Jersey) by determining species composition, size, and stage into inlets (n = 2), thoroughfares between adjacent estuaries (n = 3), and within the estuary (n = 4) in seasonal, synoptic sampling on night time flood tides during 2010–2014. Larval supply, as sampled with identical plankton nets (1 m diameter, 1 mm mesh) was dominated by post-flexion stage individuals (most 5–10 but reaching 70+ mm) from species spawned in the Atlantic Ocean from a variety of sources (e.g., Sargasso Sea, outer and inner continental shelf) and in the bay. While abundance for individual species varied among locations and years, in general, the larval composition was similar across inlets, thoroughfares, and within the bay within the same seasons. Homogenization across locations was likely the result of the tidal exchanges between the ocean, the estuary, and the adjacent locations. These exchanges provide numerous, redundant sources of larvae to this estuarine nursery. The similarity in larval supply among inlets, thoroughfares, and within the estuary indicates that the longer term study location behind Little Egg Inlet is representative for this, and probably other, estuaries along the New Jersey shore.     

Spatial variation in the environmental control of crab larval settlement in a micro-tidal austral estuary

Settlement of benthic marine invertebrates is determined by the interaction between physical factors and biological processes, in which the tide, wind, and predation can play key roles, especially for species that recruit within estuaries. This complexity promotes high variability in recruitment and limited predictability of the size of annual cohorts. This study describes the settlement patterns of megalopae of the commercially important crab Cancer edwardsii at three locations (one in the center and two at the mouth of the estuary) within the Valdivia River estuary (~39.9°S), over three consecutive years (2006–2008). At each location, 12 passive benthic collectors with a natural substratum were deployed for 48?h at 7-day intervals, over a lunar cycle. Half of the collectors were covered with mesh to exclude predators. The main findings were as follows: (1) circulation changes due to upwelling relaxation or onshore winds controlled crab settlement at sites within the mouth of the estuary, (2) at the internal estuarine site, settlement was dominated by tidal effects, and (3) the effect of predation on settlement was negligible at all scales. The results show that the predominant physical factor controlling the return of competent crab larvae to estuarine environments varies spatially within the estuary. The lack of tidal influence on settlement at the mouth of the estuary can be explained by the overwhelming influence of the intense upwelling fronts and the micro-tidal regime in the study area.     

Genetic population diversity of European eel <Emphasis Type="Italic">Anguilla anguilla</Emphasis> elvers in two Egyptian water bodies,Rosetta (Rachid) estuary and Burullus Lake

The European eel Anguilla anguilla is a species of great economic importance for Egypt. Its long trans-Atlantic migrations for semelparous spawning then larval homing provides a possible way for worldwide mixing of populations. Its natural habitats in Egypt, as in other Mediterranean countries, are under heavy load of pollution due to anthropogenic activities. Hence, a major priority should be given to assess the genetic diversity within/among eels’ populations as a step towards revealing populations’ status, identification of possible conservation units, and, subsequently, implementation of proper conservation and management strategies for them. For this, A. anguilla elvers were collected from Rosetta estuary and Burullus coastal lagoon in the North of Egypt. Sequencing of the barcode region of the cytochrome c oxidase subunit 1 gene (COI) was carried out for all collected elvers. The sequences were analyzed using various genetic, phylogenetic, and population analyses to assess their variability. A total of 33 haplotypes were identified, 14 of which were unique to Burullus Lake, and 11 to Rosetta estuary. Very low fixation (F _st ?=?0–0.04) was found for A. anguilla populations in Egypt and worldwide, except for the Turkish and Czech ones (F _st ?=?0.47–0.62 and 0.18–0.41, respectively). Both Egyptian populations showed signs of recent populations’ expansion, besides low, non-significant raggedness values. The results suggested Burullus Lake and Rosetta estuary as separate conservation units for A. anguilla in Egypt. These units require special attention for proper protection and management of the existing eel diversity and permitting sustainability in the activities dealing with eel’s fishing and aquaculture.     

River and estuary movements of yellow‐stage American eels Anguilla rostrata,using a hydrophone array

Patterns of summertime movement and habitat use of yellow‐stage American eels Anguilla rostrata within York River and estuary and Gaspé Bay (Gaspesia, Québec, Canada) were examined using acoustic telemetry. Fifty fish were tagged with acoustic transmitters and released, either in the river or in the upper estuary, and their patterns of movement and habitat use were monitored at short spatial and temporal scales during the summer months using a dense hydrophone array. Approximately half of the fish released in the river swam to the estuary; two‐thirds of the fish released within the estuary did not move out of the estuary. Anguilla rostrata were detected more frequently and had a greater areal range of detections during night, suggesting greater nocturnal activity. Longitudinal movements within the estuary tended to occur nocturnally, with upstream movements from early to late evening, and downstream movements from late evening to early morning. Approximately one‐third of fish showed a regular pattern of movement, tending to reside in the deeper, downstream part of the estuary during day and in the shallower, more upstream part of the estuary during night. Approximately a quarter of fish, located in the upper estuary, remained upstream during both night and day. The remaining fish showed patterns intermediate between these two.     

A biological trait approach to assess the functional composition of subtidal benthic communities in an estuarine ecosystem

Within transitional/estuarine environments ‘ecosystem functioning’ has been mostly investigated with “traditional” taxonomic analysis, based on the taxonomic composition of benthic invertebrate communities. However, ‘ecosystem functioning’ depends also greatly on the functional characteristics (biological traits) of organisms.It was a priori suggested that the biological traits of the subtidal benthic invertebrate communities within an estuarine environment would respond to the high variability of environmental pressures (natural and human induced) within this type of ecosystem.For this study, traditional taxonomic analysis (species richness, species density and Shannon–Wiener diversity) as well as biological trait analysis were used together for the first time to investigate the response of the subtidal benthic invertebrate communities to the environmental pressures within the Mondego estuary (Portugal).Biological trait analysis, in addition to traditional taxonomic analysis provided a more comprehensive understanding of the functioning within this type of ecosystem. Some of the most important outcomes are: (i) the trait “salinity preference” was the most important trait that distributed the species along the estuary, (ii) the central part of the estuary appeared to be under higher environmental stress levels than the other areas, as suggested by a dominance of some “opportunistic” traits (e.g. small short-lived species), (iii) the ratio between functional diversity (FD) and Shannon–Wiener diversity (H′) indicated lower functional redundancy at the upper reaches of the estuary. Our results, suggest that the ratio (FD/H′) might be a helpful tool to visualize this functional attribute and could potentially be applied to different communities from distinct environments. Using the traditional taxonomic analysis alone, this last functional aspect would not be detectable. Therefore, the inclusion of biological traits analysis is recommendable for estuarine ecological studies.     

Composition, temporal changes and ecological guild classification of the ichthyofaunas of large European estuaries – a comparison between the Tagus (Portugal) and the Elbe (Germany)

Fish species densities from 1025 hauls obtained with beam trawl and stow net catches from the southern Tagus and northern Elbe estuaries were analysed for two different periods of time between 1978 and 1997. The data were related with environmental factors to compare species composition and densities, contributions of different ecological guilds, structuring environmental key factors, intra‐annual cyclicity and interperiodical stability of ichthyofaunas in large European estuaries at different latitudes. Although the total number of species in both the Tagus and Elbe estuaries (Tagus: 57 species, Elbe: 58 species) was very similar, significant differences were estimated in species compositions, species densities and number of species, and individuals of the different ecological guilds between both estuaries. A total of 15 species occurred in both estuaries but only two of these species, the catadromous Anguilla anguilla and the marine estuarine opportunist Pleuronectes flesus, contributed substantially to the total abundance. Marine species together contributed more than 5% of the total number of species in the Tagus and Elbe estuaries, whereas their contribution in number of individuals amounted to 22% in the Tagus and only 9% in the Elbe. In terms of number of individuals, the ichthyofauna of the Tagus estuary was dominated by estuarine species (especially Pomatoschistus spp.) contributing 68% of the total abundance. In contrast, the fish fauna of the Elbe estuary was dominated by high numbers of anadromous species (88%) individuals, especially Osmerus eperlanus. Canonical corresponding analyses (CCA) indicated that, besides intra‐annual variables, salinity and mouth distance were two of the most important environmental factors structuring the fish communities in both estuaries. Moreover, water depth was found to be an important environmental factor in the Tagus estuary, whereas the water temperature substantially affected the ichthyofaunal composition in the Elbe estuary. In both estuaries, contributions by number of species and number of individuals of the different ecological guilds were not statistically different between the two periods considered, 1978–80 and 1995–97 for the Tagus, and 1981–86 and 1989–95 for the Elbe. Nevertheless, from 1981–86 until 1989–95 a remarkable increase of about 4.5 times in the densities of O. eperlanus was observed in the Elbe estuary, probably related to improved water quality, especially of oxygen conditions in the nurseries since 1990. This was also supported by the results of CCA, suggesting important influences of the years 1989 and 1990 on the Elbe estuary fish assemblage. Climate change as a result of global warming may be evident for the observed changes of the densities of P. flesus which decreased in the southern Tagus estuary and, in contrast, increased in the northern Elbe estuary during comparable periods of time. It is recommended to use the ecological guild classification scheme which was applied for the Tagus and Elbe estuaries for further studies of European estuarine fish assemblages.     

Geographical and typological changes in fish guilds of South African estuaries

A comparative analysis of fish estuary association guilds was undertaken on some 190 South African estuaries. This pioneering study spanned three zoogeographic regions and included three broad estuarine types. The guild compositions of the estuaries were compared based on an importance value, incorporating taxonomic composition, numerical abundance and relative biomass. Multivariate analyses included both inter‐regional (zoogeographic) and intra‐regional (estuarine typology) comparisons. The major estuary‐associated guilds (estuarine species and marine migrant species) were important in all estuary types within all biogeographic regions. Significant differences both between regions and between estuary types within regions, however, were recorded. Cool–temperate estuaries were generally dominated by migratory species (estuarine migrants and marine migrant opportunists) while the importance of species dependent on estuaries (estuarine residents and estuarine‐dependent marine migrants) was higher in warm–temperate and subtropical regions. The significance of estuarine nursery areas, particularly in regions where estuaries are few in number, is highlighted. In terms of typology, migratory species assumed a greater importance in predominantly open systems, while freshwater and estuarine‐resident species were more important in predominantly closed systems. Predominantly closed estuaries, however, were also important for marine migrant species, which further highlights the significance of these systems as nursery areas for fishes.     

Widespread detection of Candidatus Accumulibacter phosphatis,a polyphosphate-accumulating organism,in sediments of the Columbia River estuary

Enhanced biological phosphorus removal (EBPR) exploits the metabolism of polyphosphate-accumulating organisms (PAOs) to remove excess phosphorus (P) from wastewater treatment. Candidatus Accumulibacter phosphatis (Accumulibacter) is the most abundant and well-studied PAO in EBPR systems. In a previous study, we detected polyphosphates throughout peripheral bay sediments, and hypothesized that an estuary is an ideal setting to evaluate PAOs in a natural system, given that estuaries are characterized by dynamic dissolved oxygen fluctuations that potentially favour PAO metabolism. We detected nucleotide sequences attributable to Accumulibacter (16S rRNA, ppk1) in sediments within three peripheral bays of the Columbia River estuary at abundances rivalling those observed in conventional wastewater treatment plants (0.01%–2.6%). Most of the sequences attributable to Accumulibacter were Type I rather than Type II, despite the fact that the estuary does not have particularly high nutrient concentrations. The highest diversity of Accumulibacter was observed in oligohaline peripheral bays, while the greatest abundances were observed at the mouth of the estuary in mesohaline sediments in the spring and summer. In addition, an approximately 70% increase in polyphosphate concentrations observed at one of the sites between dawn and dusk suggests that PAOs may play an important role in P cycling in estuary sediments.     

Features of Temporal Differentiation of the Chum Salmon Oncorhynchus ketaof the Anadyr Bay Region at Different Abundance Levels

The temporal heterogeneity of chum salmon stock of the Anadyr Bay region was investigated on the basis of a set of discrete external morphological features and fluctuating asymmetry level of some meristic structures. Differentiation of Anadyr Bay chum salmon during the spawning run was found to be associated with the abundance level of spawning stock in a particular year. Sharply pronounced temporal heterogeneity, based on the investigated characteristics, in the area near the river mouth can be considered as an indicator of the subsequent deficiency of spawners on the spawning grounds of rivers in the Anadyr Bay region.     

A benthic perspective in assessing the ecological status of estuaries: The case of the Mondego estuary (Portugal)

In transitional waters the process of defining reference conditions (in the scope of the WFD) must account for the natural great variability of such environments. Therefore, stretches reflecting different physical–chemical and biological conditions throughout the system should be defined in order to correctly establish benthic specific reference conditions. Both salinity and sediment structure are major factors controlling physical–chemical conditions and therefore organisms’ distribution within an estuary. These environmental variables (salinity, sediment grain size composition and organic matter content) patterns were studied in the Mondego estuary and some clear gradients emerged. Also, ecological indices (AMBI, Margalef and Shannon-Wiener) were applied to subtidal benthic communities of the Mondego estuary and, generally, there was not only evidence of a decrease in diversity in the estuary from the downstream section towards its inner parts, but also differences were found between areas of distinct sediment composition. After comparing environmental patterns with biodiversity trends, the information was used to define homogeneous sectors along a temperate estuary in Portugal. In the Mondego estuary six zones, covering the main physical gradients affecting benthic communities, were defined: four in the northern arm and two in southern arm. Zones established will allow future determination of benthic reference conditions adjusted for each of the sectors, according to their characteristics, and consequently the conditions they provide for benthic assemblages settlement.     

Biocenoses of Anadyr Estuary (Bering Sea) and conditions of their existence

Some bottom biocenoses in the river mouth area of Anadyr Estuary are studied. Seasonal biocenosis of filamentous algae Acrosiphonia spp. occurs in the intertidal zone, biocenosis of the bivalve Macoma balthica is common at a depth of 4–8 m. Species diversity increases with depth. The distribution of biocenoses and population structure depend on the hydrological regime and substrate type in the surveyed area.     

Diversity of Ammonia-Oxidizing Archaea and Bacteria in the Sediments of a Hypernutrified Subtropical Estuary: Bahía del Tóbari, Mexico

Nitrification within estuarine sediments plays an important role in the nitrogen cycle, both at the global scale and in individual estuaries. Although bacteria were once thought to be solely responsible for catalyzing the first and rate-limiting step of this process, several recent studies have suggested that mesophilic Crenarchaeota are capable of performing ammonia oxidation. Here we examine the diversity (richness and community composition) of ammonia-oxidizing archaea (AOA) and bacteria (AOB) within sediments of Bahía del Tóbari, a hypernutrified estuary receiving substantial amounts of ammonium in agricultural runoff. Using PCR primers designed to specifically target the archaeal ammonia monooxygenase α-subunit (amoA) gene, we found AOA to be present at five sampling sites within this estuary and at two sampling time points (January and October 2004). In contrast, the bacterial amoA gene was PCR amplifiable from only 40% of samples. Bacterial amoA libraries were dominated by a few widely distributed Nitrosomonas-like sequence types, whereas AOA diversity showed significant variation in both richness and community composition. AOA communities nevertheless exhibited consistent spatial structuring, with two distinct end member assemblages recovered from the interior and the mouths of the estuary and a mixed assemblage from an intermediate site. These findings represent the first detailed examination of archaeal amoA diversity in estuarine sediments and demonstrate that diverse communities of Crenarchaeota capable of ammonia oxidation are present within estuaries, where they may be actively involved in nitrification.     

Survival and behavior of juvenile steelhead trout (Oncorhynchus mykiss) in two estuaries in Oregon, USA

Anadromous salmonids are viewed as a prized commodity and cultural symbol throughout the Pacific coast of North America. Unfortunately, several native salmonid populations are threatened or at risk of extinction. Despite this, little is known about the behavior and survival of these fish as the juveniles transition from freshwater to the ocean. Our primary objectives were to estimate survival of juvenile steelhead migrating between trapping sites and the ocean and evaluate whether survival in the estuary varies temporally (within a year) or spatially (within and between estuaries) within the same distinct population segment. We also evaluated whether flow or fork length were correlated with survival and collected information on variables that have been demonstrated to affect smolt survival in other studies to lend insight regarding differences in survival estimates between basins. We compared run timing, migration rate, survival, condition factor, age composition and time of residence in the estuary for steelhead outmigrants from each basin and measured parasite loads in outmigrating steelhead to evaluate potential differences in parasite density and parasite community between basins. In 2009, we implanted acoustic transmitters in 139 wild steelhead smolts in two small rivers on the Oregon Coast. In general, only 40–50 % of the wild steelhead smolts tagged at upstream smolt traps were detected entering the ocean. The majority of mortality occurred in the lower estuary near the ocean. Wild steelhead smolts typically spent less than 1 day in the estuary in both basins. Using similar data from previous studies in the Nehalem and Alsea basins, we showed that survival appears to be negatively correlated with flow in most releases, and in 2009 fork length was not correlated with survival. Our observations provide baseline information on factors that could influence smolt survival through the estuary as well as smolt to adult survival in these basins, and emphasize the importance of monitoring smolt survival in the estuary.