施加角担子菌B6对连作西瓜土壤微环境和西瓜生长的影响

在盆栽条件下,研究了施加角担子菌B6的菌丝对连作西瓜的土壤微生物区系以及产量的影响,以探索西瓜连作障碍的生物防治措施。施加B6的活菌丝(C)显著减少土壤中真菌的数量、增加细菌/放线菌的比例,在西瓜成熟期,与对照(A)和施加灭活的B6菌丝(B)相比,土壤中尖孢镰刀菌(FO)的数量分别减少了29.9%和63.3%。相比对照(A),在成熟期,C处理中土壤脲酶、蔗糖酶和多酚氧化酶的活力分别提高了19.0%、159.0%和31.3%;西瓜超氧化物岐化酶(SOD)和过氧化物酶(POD)活性分别增加32.7%和4.6%,西瓜根系活力(TTC法)增强46.2%,丙二醛(MDA)含量减少51.4%。与对照(A)和施加灭活B6菌(B)相比,施加B6菌(C)后,西瓜单果重分别增加44.8%和40.9%,总产量分别增加103.8%和64.9%,可溶性糖含量分别增加35.1%和10.0%。施加B6的活菌丝能够通过改善土壤微环境,提高西瓜植株的抵抗力,进而增加产量。     

滁菊连作土壤中尖孢镰刀菌的分离、鉴定及变化特征

采用传统平板培养法及尖孢镰刀菌专性培养基对滁菊连作土壤的真菌和尖孢镰刀菌进行分析测定,结果表明,在滁菊连作条件下,土壤中真菌和尖孢镰刀菌的数量显著增加,平均分别达到8.71×105 cfu/g干土和3.12×104cfu/g干土,各自是对照土壤的2.24倍和5.57倍。土壤中尖孢镰刀菌数量显著增加可能是导致滁菊连作障碍的重要因素。     

几种尖孢镰刀菌专化型中SIX1、SIX4、SIX6、SIX8同源基因分析

尖孢镰刀菌在与寄主的相互作用中分泌几个特定的富含半胱氨酸的小分子量蛋白进入木质部中启动致病力,被称为SIX(secreted in xylem)蛋白,为明确其在不同寄主中的作用,本研究比较分析了几种尖孢镰刀菌专化型中SIX1、SIX4、SIX6、SIX8同源基因序列。根据已完成的尖孢镰刀菌古巴专化型1号(Foc1)与4号生理小种(Foc4)全基因组测序序列信息及相关SIX基因序列设计引物,应用PCR方法扩增分析56株尖孢镰刀菌古巴专化型与18株其它专化型及非致病型尖孢镰刀菌菌与其它种或属共21株菌株中的SIX1、SIX4、SIX6、SIX8基因。结果表明:设计的SIX1、SIX4、SIX6、SIX8基因引物均不能从非致病性尖孢镰刀菌与其它镰刀属种或其它属的菌株DNA中扩增出目的条带;SIX1基因的2个引物均能从供试的Foc菌株DNA中扩增出目的条带,同时可从部分其它专化型菌株DNA中扩增出目的条带;SIX4基因引物仅能从供试的尖孢镰刀菌番茄专化型与部分甘蓝专化型菌株DNA中扩增出目的条带;SIX6引物仅能从供试Foc1、Foc2、Foc4菌株DNA中扩增出目的条带;SIX8基因引物能从所有供试的致病尖孢镰刀菌中DNA扩增出目的条带。研究发现的SIX6基因序列提供了快速鉴定尖孢镰刀菌古巴专化型的检测方法,同时为深入研究尖孢镰刀菌各个专化型中SIX基因的功能奠定基础。     

石灰碳铵熏蒸与施用生物有机肥对连作黄瓜和西瓜枯萎病及生物量的影响

采用稀释涂布平板计数法,研究了石灰碳铵及碳铵熏蒸对黄瓜和西瓜连作土壤尖孢镰刀菌数量的影响,以及熏蒸后施用生物有机肥对黄瓜和西瓜枯萎病的防控效果及植株生长的影响.结果表明:与对照相比,石灰碳铵及碳铵熏蒸后,连作土壤中黄瓜尖孢镰刀菌的数量分别下降95.4%及71.4%,西瓜尖孢镰刀菌的数量分别下降87.2%及64.2%;多因素方差分析表明,熏蒸、施用有机肥及作物种类均对土壤中尖孢菌数量、枯萎病发病率、防控率及生物量有显著影响;与未熏蒸施用普通有机肥对照相比,石灰碳铵熏蒸后施用生物有机肥能显著减少后茬黄瓜或西瓜土壤中尖孢镰刀菌的数量并显著降低枯萎病发病率,防控率高达91.9%及92.5%,同时显著增加了植株的株高、茎粗、SPAD值及干质量.表明石灰碳铵熏蒸及施用生物有机肥能够降低土壤中尖孢镰刀菌数量,有效防控黄瓜和西瓜枯萎病的发生并促进其植株生长.     

不同菠萝品种种植对连作蕉园土壤理化性质和可培养微生物数量的影响

【背景】不同作物轮作是克服作物连作障碍的重要措施,香蕉与菠萝轮作能有效缓解香蕉土传枯萎病。【目的】以休耕(CK)、高病蕉园土壤中种植巴西香蕉苗(B)、高病蕉园土壤中种植"巴厘"菠萝苗(B_BP)、高病蕉园土壤中种植"金菠萝"菠萝苗(B_GP)和高病蕉园土壤中种植"台农17号"菠萝苗(B_PP)为对象,研究不同菠萝品种种植对连作蕉园土壤理化性质和可培养尖孢镰刀菌、真菌、细菌和放线菌数量的影响,揭示不同菠萝品种种植在高病蕉园土壤中理化性质差异及微生物分布特征。【方法】采用盆栽试验结合可培养微生物研究方法,探究在高病蕉园土壤种植不同菠萝品种后的土壤理化性质和可培养微生物数量的变化。【结果】与休耕(CK)处理相比,高病蕉园土壤中继续种植巴西香蕉苗(B)处理显著增加土壤中尖孢镰刀菌数量,而种植菠萝品种"金菠萝"和"台农17号"(B_GP和B_PP)处理均能显著降低土壤中可培养尖孢镰刀菌数量,增加细菌和放线菌数量。土壤速效磷、细菌及放线菌数量均与可培养尖孢镰刀菌数量呈显著负相关关系;pH和真菌数量与可培养尖孢镰刀菌数量呈显著正相关关系。主坐标分析(principalco-ordinatesanalysis,PCoA)和多元回归树(multivariate regression trees,MRT)分析结果表明,种植"金菠萝"和"台农17号"菠萝(B_GP和B_PP)处理间的土壤肥力质量相近,并显著区别于其他3个处理。【结论】在高发病香蕉园地,种植菠萝品种"金菠萝"和"台农17号"(B_GP和B_PP)可以显著改善其土壤理化性质和土壤可培养微生物状况,对香蕉连作障碍有较好的缓解作用。     

胡麻专化型尖孢镰刀菌ISSR-PCR最佳反应体系的建立

采用正交试验设计原理,对尖孢镰刀菌ISSR-PCR反应体系中的5种主要因素进行优化筛选,确立了适合尖孢镰刀菌ISSR分析的反应体系,即25μL PCR反应体积中合有20 ng模板DNA、1 U Taq酶、0.4 μmol/L引物、0.2 mmol/LdNTPs、4.0 mmol/L Mg2+和2.5 μL 10 × buffer.PCR反应最佳退火温度根据引物而定,在此基础上筛选出12条扩增稳定、多态性丰富的ISSR引物.此研究为今后利用ISSR技术分析尖孢镰刀菌遗传多样性和群体结构奠定了基础.     

西瓜枯萎病菌的快速检测与鉴定

通过西瓜枯萎病菌与其他专化型枯萎病菌及瓜类几种重要病原菌的比较基因组分析,获得了西瓜枯萎病菌的基因组特异序列。在此基础上,设计出特异引物,筛选可扩增出西瓜枯萎病菌特异性DNA条带的引物。将特异性引物和尖孢镰刀菌专化型的通用引物W106R/W106S结合,建立双重PCR检测体系。该双重PCR检测体系可以在一次PCR反应中快速、准确的检测出西瓜枯萎病菌,为通过分子方法快速鉴定西瓜枯萎病菌提供技术支持。     

施加内生真菌对花生连作土壤微生物和酶活性的影响

通过盆栽试验,研究了在土壤中施加植物内生真菌拟茎点霉NJ4.1菌株、B3菌株和角担子菌B6菌株在花生不同生育时期对土壤微生物学特性及酶活力的影响.结果表明:B3处理显著提高花生荚果产量,为对照的1.2倍;施加内生菌NJ4.1、B3和B6能显著增加花生根瘤数量,分别为对照的1.2、1.3和1.3倍.3个加菌处理全生育期平均细菌和放线菌数量高于对照,萌发期和苗期土壤微生物生物量碳(SMBC)显著高于对照,微生物生物量氮(SMBN)在花生萌发期升高,开花期降低.花生开花期土壤DGGE图谱表明,B3处理土壤细菌和真菌条带数量以及多样性最高.从萌发期到成熟期,与对照相比,3个加菌处理的土壤蔗糖酶和过氧化氢酶活性提高,脲酶活性无显著变化.表明施加内生菌对连作花生土壤环境有一定的改善作用,其中施用B3效果最好.     

土壤熏蒸剂棉隆和生物菌肥对草莓连作土壤真菌多样性的影响

【背景】草莓是我国和世界上重要的园艺作物,主要采用一年一栽的栽培模式,导致连作现象普遍存在,其中真菌性病害引起的土传病害是草莓栽培中面临的一个主要问题。【目的】以草莓连作土壤为材料,探讨土壤熏蒸剂棉隆加生物菌肥对草莓连作土壤微生物真菌多样性的影响,以期为草莓连作障碍治理提供理论依据。【方法】分别采集棉隆消毒前(A)、棉隆消毒后(B)、棉隆消毒后未添加生物菌肥(C1)和添加生物菌肥(C2)初花期的草莓连作土壤(或根际土壤)样本,提取DNA,通过PCR扩增建立文库,利用Hi Seq 2500平台Illumina第二代高通量测序技术并结合相关生物信息学,分析土壤真菌ITS1区域的丰富度、多样性以及群落结构。【结果】从4个不同处理草莓连作土壤样本中获得了723个真菌OTU(Operational taxonomic unit),其中子囊菌门和担子菌门均为优势真菌。多样性和丰富度研究发现,棉隆处理降低草莓连作土壤微生物丰富度和多样性;添加生物菌肥增加根际土壤生物丰富度,并降低其多样性。从门水平看,棉隆处理担子菌门真菌比例减少,子囊菌门真菌比例增加;添加生物菌肥处理两者比例均有增加。优势真菌群落分析表明棉隆消毒减少了枝顶孢属、曲霉属、管柄囊霉属、镰刀菌属、踝节菌属、链格孢属等真菌比例,增加了马拉色氏霉菌属、线孢虫草菌属、侧耳属等真菌比例;添加生物菌肥减少了管柄囊霉属、镰刀菌属、被孢菌属、轮枝菌属、隔指孢属等真菌比例,增加了曲霉属、青霉菌属、踝节菌属、简单壳菌属等真菌比例。【结论】采用棉隆消毒和生物菌肥处理草莓连作土壤可降低微生物真菌群落的多样性,并减少或灭杀土壤中的大部分致病菌属,增加有益菌属,起到有效防治草莓土传病害的作用。     

基于EMA-qPCR的茄科青枯菌活体检测技术的建立

【目的】利用特异性核酸染料叠氮溴乙锭(Ethidium monoazide bromide, EMA)与实时荧光定量PCR技术相结合, 建立一种能有效区分青枯菌死活细胞的检测方法。【方法】样品DNA制备前经EMA渗透预处理, 再进行实时荧光定量PCR特异扩增菌体DNA。【结果】终浓度为2.0 mg/L的EMA能有效排除1.0×107 CFU/mL灭活青枯菌细胞DNA的扩增, 对活细胞和不可培养状态(Viable but non-culturable, VBNC)活菌的DNA扩增均没有影响。当每个定量PCR反应体系中的活细胞在5.0×100?5.0×104 CFU范围内时, 扩增Ct值与定量PCR反应体系中活细胞CFU对数值呈良好的负相关性(R2=0.992 5)。比较EMA-qPCR法和平板计数法对经过不同温度短期保存的青枯菌检测结果发现, 待检样品可在24 °C与4 °C冷藏条件下短期保存。【结论】本研究建立的EMA-qPCR方法能有效检测青枯菌VBNC细胞和有效区分死活菌, 避免或减少青枯菌PCR检测的假阳性和假阴性。     

内生真菌司氏角担子菌B6对尖孢镰刀菌西瓜专化型菌株的拮抗作用

近年来,尽管西瓜产业不断发展壮大,但轮作土壤种植西瓜易产生枯萎病害导致世界范围内的西瓜严重减产。通过对峙培养实验和抑菌实验探讨了重阳木内生真菌司氏角担子菌(Ceratobasidum stevensii)B6菌株对西瓜枯萎病病原菌尖孢镰刀菌西瓜专化型(Fusarium oxysporum f. sp.Niveum,FON)的拮抗作用,并初步分析了其作用机制。平板拮抗试验的结果表明,内生真菌B6生长过程中不是通过产生抑菌带来抑制FON菌丝,而是利用自身的生长优势将FON完全覆盖。显微观察B6与FON菌丝的接触部位,发现FON菌丝外侧附着B6顶端菌丝形成的胞样结构,表明FON菌丝生长仅受到B6菌丝的抑制。抑菌试验结果显示,B6产生的挥发性物质可以抑制FON的生长和产孢,并使其菌丝分枝明显减少;B6的发酵液对FON的生长和产孢没有抑制作用。因此,推测B6主要通过释放某些挥发性物质产生拮抗作用而抑制FON的生长。     

寡雄腐霉发酵液对番茄生长的影响及对灰霉病的防治作用

为了研发对番茄灰霉病高效、稳定、安全的生物农药,试验利用自主分离获得的寡雄腐霉菌株制备发酵液,采用盆栽试验研究寡雄腐霉发酵液对番茄生长的影响和对灰霉病的防治效果及机制,并在大田生产中验证其生防效果。结果表明,盆栽试验中,寡雄腐霉发酵液促进健康番茄植株生长,植株总生物量和根系生物量分别增加9.5%和15.4%,提高了植株叶绿素含量、根系活力及氮、磷、钾吸收量,并使带病番茄植株的发病率和病情指数分别降低57.2%和60.3%,相对防治效果达60.3%,施用寡雄腐霉发酵液对番茄叶片细胞膜具有保护性,降低丙二醛含量,提高病原性相关酶""超氧化物歧化酶、多酚氧化酶和苯丙氨酸解氨酶活性。后续田间试验中寡雄腐霉发酵液对番茄灰霉病的防治效果达71.2%。说明寡雄腐霉发酵液能有效防治番茄灰霉病,还具有促进番茄生长的作用,并且可诱导番茄植株对病原菌的防御作用,应用前景广泛。     

连作马铃薯根际土壤真菌种群结构及其生物效应

连作障碍已成为马铃薯产业发展的主要限制因素,为了探明马铃薯连作障碍的机理,减轻连作障碍对产量的影响,采用大田试验与PCR-DGGE分子指纹图谱技术相结合的方法,研究马铃薯连作对根际土壤真菌种群结构的影响及其生物效应.结果表明： 随着连作年限的增加,根际土壤中真菌DGGE图谱的条带数量增加,连作1～5年处理的操作分类单元(OTU)分别比对照(轮作)增加了38.5%、38.5%、30.8%、46.2%和76.9%,说明马铃薯连作使根际土壤中真菌优势种群的个体数明显增多.随着连作年限的增加,各处理间真菌种群结构的相似性越来越低.通过真菌DGGE条带的克隆测序比对发现,随着连作年限的增加,马铃薯根际土壤土传病害病原菌尖孢镰刀菌和茄病镰刀菌的数量明显增加,而球毛壳菌作为一种生防菌,连作5年时数量明显减少.连作使根际土壤中病原真菌种群过渡成为优势种群,根际微生态环境恶化,从而作用于根系,使根系活力和吸收面积下降,最终导致块茎产量大幅度-下降.     

拟茎点霉B3与有机肥配施对连作草莓生长的影响

通过盆栽试验探讨了内生拟茎点霉B3与有机肥配施对连作草莓土壤的改善及对草莓生长的影响。试验共设5个处理,分别为对照(CK)、施有机肥与灭菌固体培养基(A)、施有机肥与内生拟茎点霉B3固体菌种(B)、施有机肥与绿色木霉、黑曲霉、枯草芽孢杆菌固体菌种(C)、施加有机肥与绿色木霉、黑曲霉、枯草芽孢杆菌和内生拟茎点霉B3固体菌种(D)。结果表明:A、B、C和D处理平均单果鲜重分别为对照(CK)的1.1、1.4、0.9和1.1倍。B处理比对照增产19.7%,A处理增产8.2%,C和D处理产量均比CK低。B处理草莓生长最好,植株株高及叶面积均值比其它4个处理大。发病率及病情指数结果表明B处理抗病效果最明显,推断内生拟茎点霉B3可以用作生防菌剂。进一步的研究表明土壤真菌和细菌数量在整个生育期先上升后下降,在花期达到最大。成熟期A、B、C、D处理的土壤放线菌数量分别比CK增加7.2%、160.3%、124.5%及82.6%。在花期,B处理及D处理蔗糖酶酶活达到最大,其中A、B、C及D处理的蔗糖酶酶活分别比CK高11.1%、69.4%、50.3%及77.2%。B处理整个生育期都保持较高的土壤蔗糖酶活性。花期是草莓生长的关键期,需氮量较高。A、B、C及D处理脲酶酶活分别比CK处理高250.0%、700.0%、250.0%及175.0%,B处理花期土壤脲酶酶活性显著高于其它4个处理,促进了有机氮向速效氮的转化。花期A、C处理磷酸酶酶活比对照低67.0%、46.7%,B、D处理比对照高122.5%,227.5%。B处理在整个生育期都有较高的土壤磷酸酶酶活, D处理组在花期土壤磷酸酶酶活较高。可见含内生拟茎点霉B3菌的B及D处理组能增加土壤磷酸酶酶活。B处理在苗期和花期土壤纤维素酶活较低,而结果期和成熟期较高。说明内生拟茎点霉B3菌剂与有机肥配施可以改善连作草莓土壤微生物区系,提高土壤酶活性,增强草莓抗病能力,增加草莓产量,是一种有效缓解草莓连作障碍的方法。     

不同精粗比底物下瘤胃真菌和纤维降解细菌共培养发酵特性及菌群变化

采用体外厌氧共培养技术,研究了瘤胃真菌和纤维降解细菌在不同精粗比(A组为全粗料,B组3∶7,C组5∶5,D组7∶3,E组为全精料)底物下菌群变化及其共培养发酵特性。结果表明:与0h相比,发酵至24h时B组和C组的厌氧真菌数量有较大幅度的上升,A组和D组则有所下降,E组未检测到真菌生长;纤维降解细菌随精粗比的增加呈上升趋势。发酵至48h时,各组均未检测到真菌生长;从A组到C组细菌数量呈上升趋势,此后急剧下降。DGGE结果表明,A、B和C组(精粗比低于5∶5)的DGGE图谱相似,有11条共有条带,但是当精粗比上升到7:3时,条带数目显著下降。随精料比例的增加,整个发酵期共培养系统中pH值显著下降(P<0.05)。整个发酵期间,共培养系统发酵产生的VFA主要为乙酸,丙酸和丁酸的量较少,乙酸与丙酸比值从A组到C组呈下降趋势,此后呈上升趋势。随精料比例的上升,发酵48h时总挥发性脂肪酸浓度从A组到C组呈上升趋势,此后呈下降趋势。发酵48h的羧甲基纤维素酶活和木聚糖酶活均以A组最高,而α-淀粉酶活从A组到D组逐渐增大,而E组最低,仅为B、C、D组的1/4~1/3。     

Effect of monoculture soybean on soil microbial community in the Northeast China

Monoculture (MC) soybean, a common practice in the Northeast China, causes significant declines in soybean yield and quality. The objective of this study was to evaluate the responses of the soil microbial community and soybean yield to different soybean cropping systems. Three cropping systems were compared, (1) corn-soybean rotation (corn-corn-soybean, CS), (2) MC soybean for 3 years (S3), (3) MC soybean for 9 years (S9). Both bulk and rhizosphere soil samples were collected at three growth stages: two trifoliate (V2), full bloom (R2), and full seed (R6), respectively. Soil microbial DNA was analyzed using polymerase chain reaction (PCR)—denaturing gradient gel electrophoresis (DGGE) to assess changes in composition of bacterial and fungal communities. Prominent DGGE bands were excised and sequenced to gain insight into the identities of the predominant microbial populations. Some prominent differences were observed in bacterial DGGE patterns of amplified 16S rDNA (V3 region) among rhizosphere soils. These major differences included one DGGE band (showing 100% similarity to Arthrobacter sp.) that was enriched at R2 stages in CS and S9, and another band with 97% sequence similarity to an uncultured actinobacterium was detected at R6 stage in CS, and at R2 and R6 stages in S9. The bacterial community from bulk soil showed no significant band change in DGGE patterns among different cropping systems. In fungal DGGE patterns of the amplified 18S rDNA partial fragment, one specific band (showing 98% similarity to Trichoderma viride) occurred in rhizosphere soil of treatment CS at V2 and R6 stages and treatment S9 at R6 stage. None of the above bands were detected in treatment S3. The soybean yields and plant heights from CS and S9 were greater than those from S3. Moreover, catalase activities from CS and S9 at V2 and R2 stages were higher than those tested from S3 at the corresponding times in rhizosphere soil. The present results showed that DGGE patterns were not able to detect significant differences in diversity or evenness among microbial communities, but significant differences were found in the composition of bacterial and fungal community structures. Some distinguished bands from bacterial and fungal DGGE patterns were only enriched in CS and S9 soil, which could potentially play an important role in soybean growth development.     

Effect of low temperature and culture media on the growth and freeze-thawing tolerance of Exiguobacterium strains

Bacteria of the genus Exiguobacterium have been repeatedly isolated from ancient permafrost sediments of the Kolyma lowland of Northeast Eurasia. Here we report that the Siberian permafrost isolates Exiguobacterium sibiricum 255-15, E. sibiricum 7-3, Exiguobacterium undae 190-11 and E. sp. 5138, as well as Exiguobacterium antarcticum DSM 14480, isolated from a microbial mat sample of Lake Fryxell (McMurdo Dry Valleys, Antarctica), were able to grow at temperatures ranging from -6 to 40 degrees C. In comparison to cells grown at 24 degrees C, the cold-grown cells of these strains tended to be longer and wider. We also investigated the effect of growth conditions (broth or surface growth, and temperature) on cryotolerance of the Exiguobacterium strains. Bacteria grown in broth at 4 degrees C showed markedly greater survival following freeze-thawing treatments (20 repeated cycles) than bacteria grown in broth at 24 degrees C. Surprisingly, significant protection to repeated freeze-thawing was also observed when bacteria were grown on agar at either 4 or 24 degrees C.     

Afforestation alters community structure of soil fungi

Relatively little is known about the effect of afforestation on soil fungal communities. This study demonstrated that afforestation altered fungal community structure and that changes were correlated to pools of soil C. Pasture at three locations on the same soil type was afforested with Eucalyptus globulus or Pinus pinaster. The structure of fungal communities under the three land uses was measured after 13y using automated ribosomal intergenic spacer analysis (ARISA). Afforestation significantly altered the structure of fungal communities. The effect of location on the structure of fungal communities was limited to pasture soils; although these contained the same plant species, the relative composition of each species varied between locations. Differences in the structure of fungal communities between pasture, E. globulus and P. pinaster were significantly correlated with changes in the amount of total organic C and microbial biomass-C in soil. Afforestation of patches of agricultural land may contribute to conserving soil fungi in agricultural landscapes by supporting fungal communities with different composition to agricultural soils.     

Study on the production of chitin and chitosan from shrimp shell by using Bacillus subtilis fermentation

Fermentation of shrimp shell in jaggery broth using Bacillus subtilis for the production of chitin and chitosan was investigated. It was found that B. subtilis produced sufficient quantities of acid to remove the minerals from the shell and to prevent spoilage organisms. The protease enzyme in Bacillus species was responsible for the deprotenisation of the shell. The pH, proteolytic activity, extent of demineralization and deprotenisation were studied during fermentation. About 84% of the protein and 72% of the minerals were removed from the shrimp shell after fermentation. Mild acid and alkali treatments were given to produce characteristic chitin and their concentrations were standardized. Chitin was converted to chitosan by N-deacetylation and the properties of chitin and chitosan were studied. FTIR spectral analysis of chitin and chitosan prepared by the process was carried out and compared with spectra of commercially available samples.