Development of synthetic Brassica amphidiploids by reciprocal hybridization and comparison to natural amphidiploids

In a previous study we proposed that cytoplasmic genomes have played an important role in the evolution of Brassica amphidiploid species. Based on this and other studies, we hypothesized that interactions between the maternal cytoplasmic genomes and the paternal nuclear genome may cause alterations in genome structure and/or gene expression of a newly synthesized amphidiploid, which may play an important role in the evolution of natural amphidiploid species. To test this hypothesis, a series of synthetic amphidiploids, including all three analogs of the natural amphidiploids B. napus, B. juncea, and B. Carinata and their reciprocal forms, were developed. These synthetic amphidiploids were characterized for morphological traits, chromosome number, and RFLPs revealed by chloroplast, mitochondrial, and nuclear DNA clones. The maternal transmission of chloroplast and mitochondrial genomes was observed in all of the F₁ hybrids examined except one hybrid plant derived from the B. rapa x B. oleracea combination, which showed a biparental transmission of organelles. However, the paternal chloroplast and mitochondrial genomes were not observed in the F₂ progeny. Nuclear genomes of synthetic amphidiploids had combined RFLP patterns of their parental species for all of the nuclear DNA clones examined. A variation in fertility was observed among self-pollinated progenies of single amphidiploids that had completely homozygous genome constitutions. Comparisons between natural and synthetic amphidiploids based on restriction fragment length polymorphism (RFLP) patterns indicated that natural amphidiploids are considerably more distant from the progenitor diploid species than the synthetic amphidiploids. The utility of these synthetic amphidiploids for investigating the evolution of amphidiploidy is discussed.     

Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs)

Summary Restriction fragment length polymorphisms (RFLPs) of nuclear DNAs have been used to explore the origin and evolution of the six cultivated Brassica species. Extensive RFLP variation was found at the species, subspecies and variety levels. Based on RFLP data from Brassica and related genera, a detailed phylogenetic tree was generated using the PAUP microcomputer program, which permits a quantitative analysis of the interrelationships among Brassica species. The results suggested that 1) B. nigra originated from one evolutionary pathway with Sinapis arvensis or a close relative as the likely progenitor, whereas B. campestris and B. oleracea came from another pathway with a possible common ancestor in wild B. oleracea or a closely related nine chromosome species; 2) the amphidiploid species B. napus and B. juncea have evolved through different combinations of the diploid morphotypes and thus polyphyletic origins may be a common mechanism for the natural occurrence of amphidiploids in Brassica; 3) the cytoplasm has played an important role in the nuclear genome evolution of amphidiploid species when the parental diploid species contain highly differentiated cytoplasms. A scheme for the origins of diploid and amphidiploid species is depicted based on evidence gathered from nuclear RFLP analysis, cpDNA RFLP analysis, cytogenetic studies and classical taxonomy.     

Investigations on the artificial synthesis of amphidiploids of Brassica tournefortii Gouan with the other elementary species of Brassica. I. Genomic relationships

With the object of studying the genomic relationships of Brassica tournefortii Gouan with the other elementary species of Brassica viz. B. campestris (2n=20, A genome), B. oleracea (2n=18, C genome) and B. nigra (2n=16, B genome), it has been hybridized with them. The percentage of F₁ hybrids formed, their morphology and meiotic behaviour have been described. Based upon crossability relationships and meiotic pairing in the F₁ hybrids, it is inferred that the D genome of B. tournefortii is more closely related to the A genome than to the B and C genomes. It may have been derived from the A genome which likewise shows a strong genetic isolation from B and C. The species has developed a strong genetic barrier in the course of its evolution and shows little crossability, high hybrid sterility and no gene flow with any of the other elementary species. The fact that it has not formed any natural amphidiploids with the elementary species which otherwise are formed in all combinations, is more evidence that it originated more recently than the A genome. It is presumed that B. tournefortii, being more distantly related to B. nigra than to other elementary species, may form stable artificial aphid resistant amphidiploids with the former.     

VARIATION IN CHROMATOGRAPHIC PATTERNS IN THE TRAGOPOGON DUBIUS-PRATENSIS-PORRIFOLIUS COMPLEX (COMPOSITAE)

Natural populations of the diploid species, Tragopogon dubius, T. pratensis and T. porrifolius, the F₁ hybrids of these species, and the two amphidiploids, T. mirus and T. miscellus, were obtained from the same localities used for previous morphological and cytological studies of the evolutionary relationships of this complex. Inter- and intra-populational comparisons were made utilizing 2-dimensional chromatograms of these taxa. Members of the complex shared a group of 18 flavonoid-type pattern components, no one of which was completely species specific. Therefore, species patterns were expressed for a population rather than an individual with pattern components being expressed as a frequency. Patterns for F₁ hybrids and amphidiploids, expressed in the same manner, were relatable to the parental species. Diploid species and F₁ hybrid patterns were the most variable in areas of greatest sympatry, indicating considerable genetic interchange between species. The distribution of specific components in certain populations was interpreted as chemical introgression. Evidence was presented for separate origins of T. mirus in two localities. The results confirm previous interpretations of the evolutionary relationships in this complex, and when compared to those obtained for Baptisia, they implicate the different breeding systems as important factors in establishing the kind of variation observed.     

Variability of Storage Proteins and Esterase Isozymes in Vicia Sativa Subspecies

The relationships among 20 samples belonging to 6 subspecies of Vicia sativa based on the variability of seed storage proteins and esterase isozyme electrophoretic patterns was discussed in relation to variation in their morphology and chromosome characters. Electrophoretic protein profiles of different accessions of the same subspecies showed identical (e.g. macrocarpa and cordata) or similar (e.g. amphicarpa) patterns, confirming the stablity of seed storage proteins within these subspecies. However, considerable variation of protein patterns were observed within accessions of both nigra and sativa subspecies, which could be correlated to different geographical origins. Esterase pattern revealed a sharp distinction for each subspecies according to the number and loci of allelic bands. The dendrogram delimited the subspecies incisa and sativa as two separate groups, while the other subspecies were grouped together in another group.     

Brassica carinata resynthesized by protoplast fusion

Brassica carinata (bbcc) was resynthesized by protoplast fusion betweenB. nigra (bb) andB. oleracea (cc). In two fusion experiments 64 hybrid plants were obtained and identified to be true hybrids by isoenzyme analysis, nuclear DNA content, chromosome number, and intermediate morphology. Of these plants 56% were normal amphidiploids with 2n=34 chromosomes and a DNA content equivalent to that of naturalB. carinata. The remaining plants were polyploid, morphologically abnormal, and infertile. The majority of the hybrids contained both chloroplasts and mitochondria fromB. nigra, but some plants combined chloroplast and mitochondria from the different progenitors. Hybrids with a DNA content equivalent to that ofB. carinata had a wide range of male fertility (4–98%), but consistently low female fertility. Only a few selfed seed were produced, but these germinated and grew into vigorous plants.Salaries and research support provided by State and Federal funds appropriated to the Ohio Agricultural Research and Development Center, The Ohio State University. Journal Article No. 296-92     

Studies on the speciation of the European freshwater planarians Polycelis nigra and Polycelis tenuis based on the analysis of enzyme variation by means of iso-electric focusing

Polycelis nigra Ehrenberg and Polycelis tenuis Ijima differ morphologically and karyologically. No difference, however, was found in the isozyme pattern of malate dehydrogenase and tetrazolium oxidase, indicating a close relationship. Most sibling species differ at half of the loci.It could be deduced that the reproductive behaviour of a single population of Polycelis nigra in a Dutch pond was not panmictic. Two genetically different strains retained their identities during two years of observation. If pseudogamy occurs in this diploid planarian, the presence of heterozygous specimens indicates the absence of a true meiosis.The iso-electrofocusing technique by which these population-genetical studies were carried out, also lends itself to a comparison of overall protein banding patterns. The membrane proteins especially are conservative. The sodium dodecyl sulphate extracted proteins of Polycelis nigra-tenuis, Planaria torva and Phagocata vitta were very similar, while their water soluble proteins were not. This technique may be of great help in taxonomic studies of the higher taxa.     

Salinity Tolerance in Brassica Oilseeds

Brassica oilseed species now hold the third position among oilseed crops and are an important source of vegetable oil. The most common Brassica oil-seed crops grown for commercial purposes are rape seeds, (Brassica campestris L. and B. napus L.) and mustards (B. juncea (L.) Czern. & Coss. and B. carinata A.Br.). The other Brassica species such as B. nigra (L.) Koch and B. tournefortii Gouan are grown on a very small scale. Brassica napus, B. juncea, and B. carinata are amphidiploids, whereas B. campestris and B. nigra are diploid. Most of the Brassica species have been categorized as moderately salt tolerant, with the amphidiploid species being the relatively salt tolerant in comparison with the diploid species. Due to the higher salt tolerance of the amphidiploids, it has been suggested that their salt tolerance has been acquired from the A (B. campestris) and C (B. oleracea L.) genomes. However, significant inter- and intraspecific variation for salt tolerance exists within brassicas, which can be exploited through selection and breeding for enhancing salt tolerance of the crops. There are contrasting reports regarding the response of these species to salinity at different plant developmental stages, but in most of them it is evident that they maintain their degree of salt tolerance consistently throughout the plant ontogeny. The pattern of uptake and accumulation of toxic ions (Na⁺ and Cl^?), in tissues of plants subjected to saline conditions appears to be mostly due to mechanism of partial ion exclusion (exclusion of Na⁺ and/or Cl^?) in most of the species, although ion inclusion in some cases at intraspecific levels has also been observed. Maintenance of high tissue K⁺/Na⁺ and Ca^{2 +}/Na⁺ ratios has been suggested as an important selection criterion for salt-tolerance in brassicas. Osmotic adjustment has also been reported in Brassica plants subjected to saline conditions, but particularly to a large extent in salt-tolerant species or cultivars. The roles of important organic osmotica such as total soluble sugars, free amino acids, and free proline, which are central to osmotic adjustment, have been discussed. In canola, B. napus, no positive relationship has been observed between salt tolerance and erucic acid content of seed oil in different cultivars. Furthermore, glucosinolate content of the seed meal in canola generally increases with an increase in salt level of the growth medium. This review highlights the responses of potential Brassica crops to soil salinity from the whole plant to the molecular level. It also describes the efforts made during the past millennium in uncovering the mechanism(s) of salinity tolerance of these crops both at the whole plant and cellular levels. The important selection criteria, which are used by researchers to enhance the degree of salinity tolerance in brassicas, are summarized. In addition, the vital role of genetic engineering and molecular biology approaches to the improvement of salt tolerance in brassicas is emphasized.     

Interspecific variation of body shape and sexual dimorphism in three coexisting species of the genus <Emphasis Type="Italic">Petrotilapia</Emphasis> (Teleostei: Cichlidae) from Lake Malawi

Differences in color patterns have been the most used feature in describing cichlid species belonging to genus Petrotilapia from Lake Malawi. In this study, we quantified morphological variation in body shape within and among three coexisting Petrotilapia species using landmark-based geometric morphometric methods. Statistic analyses revealed significant body shape differences among species but not between sexes. Post hoc multiple comparisons based on Mahalanobis distances revealed that P. nigra was significantly different from P. genalutea and Petrotilapia sp., whereas the latter two were not significantly different. The splines generated showed that the most pronounced variation was in the head region, in which P. nigra had a relatively longer and deeper head than the other two. The most clear-cut distinction was in gape length; P. genalutea had the longest gape, followed by Petrotilapia sp., whereas P. nigra had the shortest gape. Body depth was shallower in P. nigra than the others. When comparing sexes by their centroid size, ANOVA revealed that males were bigger than females. Therefore, we conclude that color is not the only feature that can distinguish these congeners. We discuss the observed sexual dimorphism in terms of sexual selection and relate morphological variation among species to feeding behavior, which may help explain their coexistence in nature.     

Synthesis of Brassica carinata from Brassica nigra x Brassica oleracea hybrids obtained by ovary culture

Summary Brassica carinata was synthesized by hybridization between its diploid progenitor species B. nigra and B. oleracea followed by chromosome doubling. Up to 40 times more hybrids were obtained, using ovary culture than with conventional hand pollination. Two hybrids from the cross B. nigra x B. oleracea var alboglabra were raised to maturity. High chromosome pairing was observed in both the hybrids and the amphidiploid. A range of variability for desirable characters is reported in the synthesized amphidiploids.     

ELECTROPHORETIC ANALYSIS OF ENZYMES FROM THREE SPECIES OF CHLAMYDOMONAS

Isoenzyme patterns of acetone-extracted proteins revealed a close similarity between Chlamydomonas eugametos and C. moewusii but a distant relationship between the two and C. reinhardtii. Chlamydomonas eugametos and C. moewusii had identical banding patterns of malate dehydrogenase (MDH) and leucine aminopeptidase (LAP) in starch gels. These two species exhibited the same MDH distribution spectrum in analytical disc polyacrylamide gels but neither species showed definitive LAP or glutamate dehydrogenase (GDH) activity. There were differences in the starch gel alpha esterase (α-EST) patterns of C. eugametos and C. moewusii due to an additional weak band at Rf 0.75 in the latter species and a slight variation in the position of another band at Rf 0.80–0.82. Some variations between the two species also occurred in the α-EST banding in disc gels at Rf 0.70–0.85 and at Rf 0.06–0.14 with C. moewusii exhibiting the greatest number of bands. Chlamydomonas reinhardtii displayed patterns of all four enzymes but the band characteristics were distinctively different from those of C. eugametos and C. moewusii. There appeared to be no obvious isoenzyme difference between mating types of either species. It is concluded that C. eugametos and C. moewusii are not identical species but are closely related in regard to the enzymes assayed. Isoenzyme analysis is considered to be a useful approach to algal systematics.     

Analysis of chloroplast and mitochondrial segregation in three different combinations of somatic hybrids produced within Brassicaceae

Summary Mitochondrial and chloroplast DNA were characterized in three different combinations of somatic hybrids produced between different species within Brassicaceae. The fusions were made between B. campestris and B. oleracea, B. napus and B. nigra and between B. napus and Eruca sativa. The combinations represent interspecific hybridizations, but the phylogenetic distance between the species used in each instance is different. Whereas the B. campestris (+) B. oleracea and the B. napus (+)B. nigra hybrids are both examples of intrageneric hybrids, B. campestris is more closely related to B. oleracea than B. napus is to B. nigra. The fusion of B. napus and E. sativa represents an intergeneric hybridization. Since hybrids were produced with reproducible and uniform fusion and culture methods, a comparison of chloroplast and mitochondrial segregation and mitochondrial DNA (mt-DNA) rearrangements could be made between the combinations. The segregation of both chloroplasts and mitochondria was biased in the B. napus (+)B. nigra and the B. napus (+)E. sativa combination. The nonrandom segregation of chloroplasts and mitochondria could be due to the different ploidy levels of the fusion partners and/or reflect differences in organelle replication rate. Furthermore, segregation of mitochondria was correlated to the differences in phylogenetic distance between the species used in the fusions. However, mitochondrial segregation, in contrast to chloroplast segregation, could in all combinations also have been affected by the cell type used as protoplast source in the fusions. All different chloroplast types could be established within each combination. Hybrids containing chloroplast from one parent together with mitochondria from the other parent were found in two of the combinations, although the majority of the hybrids had mt-DNA that was altered compared to the parental species. The rearranged mt-DNA found in most hybrids was an effect of the heteroplasmic state following protoplast fusion rather than of the tissue culture methods, since no mt-DNA rearrangements were found in B. napus plants regenerated from protoplast culture. The mtDNA restriction patterns of the hybrids with rearranged mt-DNA indicated that specific regions of the mt-DNA were involved in the rearrangements following protoplast fusion.     

Inheritance and mapping of isoenzymes in pea (Pisum sativum L.)

Summary Three isoenzyme systems (amylase, esterase and glutamate oxaloacetate transaminase) were examined in seeds of pea (Pisum sativum L.) and shown to give clear variation in their band patterns on gel electrophoresis between different lines. The inheritance of these isoenzyme systems, and the location of their genes on the pea genome was investigated. Reciprocal crosses were made between lines, F2 seeds were analysed for segregation in the band patterns of the isoenzymes, and F2 plants were investigated to find linkage between the genes for these isoenzymes and genes for selected morphological markers. The results obtained showed that each of the investigated isoenzyme systems is genetically controlled by co-dominant alleles at a single locus. The gene for amylase was found to be on chromosome 2, linked to the loci k and wb (wb ... 9 ... k ... 25 ... Amy). The gene for esterase was found to be linked with the gene Br (chromosome 4) but the exact location is uncertain because of the lack of the morphological markers involved in the cross. The gene for glutamate oxaloacetate transaminase was found to be on chromosome 1 and linked with the loci a and d (a... 24... Got... 41 ... d).     

Breeding and identification of novel koji molds with high activity of acid protease by genome recombination between <Emphasis Type="Italic">Aspergillus oryzae</Emphasis> and <Emphasis Type="Italic">Aspergillus niger</Emphasis>

Acid protease is essential for degradation of proteins during soy sauce fermentation. To breed more suitable koji molds with high activity of acid protease, interspecific genome recombination between A. oryzae and A. niger was performed. Through stabilization with d-camphor and haploidization with benomyl, several stable fusants with higher activity of acid protease were obtained, showing different degrees of improvement in acid protease activity compared with the parental strain A. oryzae. In addition, analyses of mycelial morphology, expression profiles of extracellular proteins, esterase isoenzyme profiles, and random amplified polymorphic DNA (RAPD) were applied to identify the fusants through their phenotypic and genetic relationships. Morphology analysis of the mycelial shape of fusants indicated a phenotype intermediate between A. oryzae and A. niger. The profiles of extracellular proteins and esterase isoenzyme electrophoresis showed the occurrence of genome recombination during or after protoplast fusion. The dendrogram constructed from RAPD data revealed great heterogeneity, and genetic dissimilarity indices showed there were considerable differences between the fusants and their parental strains. This investigation suggests that genome recombination is a powerful tool for improvement of food-grade industrial strains. Furthermore, the presented strain improvement procedure will be applicable for widespread use for other industrial strains.     

Study of interrelationship among A-genome species of the genus Oryza through isoenzyme variation

Summary The interrelationships among ten different A-genome species of the genus Oryza were studied based on variations in the electrophoretic pattern of isoenzymes of two non-specific enzymes, esterase and peroxidase. There were 16 isoenzymes of esterase and 14 of peroxidase. The esterase pattern could be classified into 3 different Zymograms 1e, 2e & 3e based on the presence and/or absence of bands at particular Rf values. The pattern le was found exclusively among the species and varietal groups of sativa complex, whereas 2e and 3e were distributed exclusively among the species of the glaberrima complex and related wild forms. The peroxidase pattern also fell into 3 different zymograms viz. 1p, 2p and 3p. Unlike esterase, all three zymograms were present in both the sativa and glaberrima complexes.The similarity indices (S) between the different pairs of entries were computed taking into account the presence as well as the relative intensity of the corresponding isoenzyme bands. The varieties and sub-species of 0.sativa showed very high similarity values with the Asian perennis (O.perennis sub sp. balunga), lending evidence for the probable differentiation of the former from the latter. The African cultivated species O.glaberrima showed very high similarity to the African perennis form O.pevennis sub sp. barthii, O.breviligulata and O.stapfii. The only cubensis form studied had the same esterase and peroxidase pattern as that of the species of the glaberrima complex and also a very high similarity with this group. Thus, the entire A-genome species could be broadly grouped into the sativa and glaberrima complexes, and within the group there was a lot of overlapping in similarity values making it difficult to identify and pin-point species or subspecies based on their isoenzyme patterns and similarity values.     

Circumscription of taxa in the chasmophilous Iranian Stachys species (Lamiaceae: sect. Fragilicaulis, subsect. Fragiles) inferred from isoenzyme variation patterns

Fresh leaves of 150 individuals from 15 populations representing five putative species of Stachys sect. Fragilicaulis, subsect. Fragiles distributed in the Zagros mountains in western Iran were analyzed for isoenzyme variation. Four enzyme systems (peroxidase, esterase, superoxide dismutase and ascorbate peroxidase) have been studied and a total of 32 bands representing seven putative loci have been analyzed by UPGMA using the Euclidean distances. UPGMA analysis resulted in the recognition of three distinct clusters among the considered populations. The average value of Shannon diversity index (H′) estimated for each population ranged from 0.05 to 2.17. The mean number of bands per isoenzyme ranges from 1.60 to 2.50. The value of Euclidean distance ranges from 0.85 to 3.79. The analysis of isoenzyme variation patterns suggests recognizing following species in Stachys sect. Fragilicaulis subsect. Fragiles: Stachys benthamiana (including Stachys megalodonta), Stachys kurdica (including Stachys ballotiformis) and Stachys asterocalyx. These data also suggest paying more attention to geographical distribution of taxa in Stachys for their taxonomic delimitation. This study provides another strong support for application of electrophoretic analysis of isoenzymes in taxonomy at species level.     

Characterization of Two Sibling Species of the Genus Stylonychia (Ciliata,Hypotricha): S. mytilus Ehrenberg, 1838 and S. lemnae n. sp. II. Biochemical Characterization1

The two closely related hypotrichous ciliate species, Stylonychia lemnae and S. mytilus, have been compared with respect to their isoenzyme patterns, their macronuclear DNA banding patterns, and micronuclear DNA banding patterns after restriction enzyme digestion. Since macronuclear DNA contains mainly protein-coding sequences and since the micronuclear DNA patterns represent mainly the repetitive fraction of the genome, these results, together with the isoenzyme patterns, reflect differences on three different levels of molecular evolution between morphologically very similar species. Each of the three methods allows an unequivocal identification of each of the two species. Intraspecific variation seems to be greatest among the repetitive sequences of the micronuclear genomes. By using the isoenzyme data and the formula of Nei (19) the genetic distance between the two species is calculated and compared with the results from other protozoa and different Drosophila species. Despite their morphological similarity, the two species show a considerable amount of evolutionary divergence on the three molecular levels which have been investigated.     

Use of isoenzyme and protein phenotypes to discriminate between six Pratylenchus species from Great Britain

Six species of Pratylenchus indigenous to Great Britain, P. crenatus, P. fallax, P. neglectus, P. penetrans, P. pinguicaudatus and P. thornei were analysed by slab gel electrophoresis to compare protein patterns and isoenzyme phenotypes of esterase, glucose-6-phosphate dehydrogenase, isocitrate dehydrogenase, phosphoglucose isomerase and phosphoglucomutase. Multiple electromorphs were obtained from all enzymes examined. The results demonstrated that isoenzyme phenotypes are useful to supplement the morphological characterisation of these nematode species. Pair-wise comparisons of the six species were performed giving coefficients of similarity in the range 11–41%. A dendrogram of the six species, generated from the five enzyme banding patterns, gave two groups: group 1 contained P. pinguicaudatus, P. fallax and P. thornei and group 2 contained P. penetrans, P. neglectus and P. crenatus.     

Analysis of a set of RAPD markers by hybridization and sequencing in Brassica: a note of caution

A series of RAPD markers generated by a single 10-mer primer were analyzed by hybridization to amplified and genomic DNA and by sequencing in two Brassica species. Primer B18 produced different profiles of nine major bands each in both Brassica nigra (B genome) and B. napus (AC genomes). Cloning and sequencing of five B18 B. nigra amplification products revealed that they were all unrelated to each other. Only limited stretches of high similarity of up to 69 nucleotides were shared by some of these clones. Hybridization to genomic DNA indicated that only two corresponded to a highly repeated sequence, whereas the rest were low copy sequences. In spite of their lack of homology, when these clones were used as probes to amplified B. nigra DNA, they hybridized to multiple bands in the profile. Hybridization of B. nigra clones for bands of similar sizes in both species, failed to hybridize in B. napus, revealing lack of homology between the DNAs of the two species. Because of these inconsistencies, it is concluded that RAPD markers, although useful for genetical studies, should be used with caution specially when basing homology on cross-hybridization and fragment sizes.