From proteins to systems: the British Society for Proteomics Research (BSPR) meeting 2005

This report describes the highlights of the second scientific meeting of the British Society for Proteome Research (BSPR), jointly organised with the European Bioinformatics Institute (EBI), and held at The Genome Centre, Cambridge UK in July 2005. The theme of the meeting was "From Proteins to Systems" covering many diverse aspects of proteomics, bioinformatics and systems biology.     

New evolutions in the BACE1 inhibitor field from 2014 to 2018

β-Site amyloid precursor protein cleaving enzyme 1 (BACE1) inhibitors offer the potential of disease-modifying treatment for Alzheimer’s disease (AD). Since 2014, major breakthroughs have appeared in the field of BACE1 inhibitors. This review provides an overview of amidine-based BACE1 inhibitors between 2014 and 2018. Herein are summarized i) the structure-activity relationship, ii) the physiological results and iii) the potential risks from a lack of selectivity. This review also summarizes clinical scope, results and outlook of the compounds that have been or are currently under development in clinical trials.     

First record of the plant bug genus Ulmica Kerzhner (Heteroptera: Miridae: Orthotylinae) from Korea,with one new species

The orthotyline plant bug genus Ulmica Kerzhner, 1988 is reported from Korean peninsula for the first time, based on finding of the second congener that is herein described as Ulmica yasunagaisp. nov. Morphological diagnosis for the genus is provided, dorsal habitus, female and male genital structure of U. yasunagai are also suggested and figured to distinguish it unequivocally from the other known species, Ulmica baicalica (Kulik). urn:lsid:zoobank.org:pub:94307D23-A84B-4FD9-B73B-E2C8904E37C7     

Separating forest continuity from tree age effects on plant diversity in the ground and epiphyte vegetation of a Central European mountain spruce forest

Forest continuity has been identified as an important factor influencing the structure and diversity of forest vegetation. Primary forests with centuries of continuity are usually more diverse than young secondary forests as forest are colonized only slowly and because the former are richer in old tree individuals. In the present study, performed in unmanaged high-elevation spruce forests of the Harz Mountains, Germany, we had the unique opportunity to separate the effects of forest continuity and tree age on plant diversity. We compared an old-growth spruce forest with century-long habitat continuity with an adjacent secondary spruce forest, which had naturally established on a former bog after 1796 when peat exploitation halted. Comparative analysis of the ground and epiphyte vegetation showed that the plant diversity of the old-growth forest was not higher than that of the secondary forest with a similar tree age of >200 years. Our results suggest that a period of >200 years was sufficient for the secondary forest to be colonized by the whole regional species pool of herbaceous and cryptogam forest plants and epiphytes. Therefore, it is likely that habitat structure, including the presence of old and decaying trees, was more important for determining plant diversity than the independent effect of forest continuity. Our results are probably not transferrable to spruce forests younger than 200 years and highly fragmented woodlands with long distances between new stands and old-growth forests that serve as diaspore sources. In addition, our results might be not transferable to remote areas without notable air pollution, as the epiphyte vegetation of the study area was influenced by SO₂ pollution in the second half of the 20th century.     

Heavy Metal Accumulation in Four Species of Sea Turtles from the Baja California Peninsula, Mexico

Heavy metals were assessed in four species of sea turtles from the Baja California Peninsula, Mexico, representing the first report of heavy metal concentrations in tissues of post-yearling sea turtles from the Eastern Pacific. Concentrations of Cd measured in C. mydas kidney (653 μg/g dry wt) were the highest ever reported for any sea turtle species. Cd accumulated preferentially in kidney and the ratios of kidney to liver Cd in Baja California turtles were among the highest reported for sea turtles globally. Zn, Ni, and Mn concentrations were also significantly higher in kidney than other tissues, while Cu and Fe were greatest in liver, and all metals were lowest in muscle. With the exception of one value (69.9 μg/g in kidney of C. caretta), Pb was low in all tissues from Baja California. In comparisons across species, kidney of C. mydas had greater Zn and Ni concentrations as compared to other species, although there was no difference in liver metal levels among the species. Positive correlations were detected in the concentrations of Cd, Cu and Ni with the straight carapace length of C. caretta.     

A new approach to estimating the pool of stable organic matter in soil using data from long-term field experiments

It is a necessity to have a successful method to separate, quantify and define the active and passive soil organic matter pools for appropriate verification of models. In this study, the organic carbon content of long-term bare fallow soils was used as an indicator of the size of the stable soil organic matter pool. Although soil texture and soil structure are widely accepted as having an influence on the stable pool, most soil organic models neglect the relationship between soil structure and carbon stabilization. Therefore, the aim of this presentation is to estimate the size of the stable carbon pool and to relate it to soil texture and structure properties. It was calculated that over 50 yr, under bare fallow conditions, the relative decrease in the amount of carbon (C) for the most stable pools ranged between 2 and 12%. In comparison, for the less stabilized pools the relative decrease was calculated from 50 to 100%. This indicates that the organic carbon content of long-term bare fallow soils should be very similar to the size of the most stable C pool. We also observed that the amounts of carbon associated with primary particles <20 μm for numerous soils with contrasting carbon content, soil texture, and management practices showed a lower and an upper limit. Both these limits and the carbon content of long-term bare fallow soils (which were assumed to be similar to the size of the stable pool) were related to the content of primary particles <20 μm in the soil. To calculate these relationships, an equation was used including one term to describe the influence of soil texture and another to describe that of soil structure. The calculated regression for the bare fallow soils corresponded very well to the lower limit of carbon content associated with primary particles <20 μm. The upper limit was estimated only by increasing the regression parameter which is related to the amount of C per unit primary particles <20 μm. Considering the many published results of the influence of soil texture and structure on carbon stabilization processes in soil, the stable pool may be defined as the capacity of soils to sorb C. The upper limit of carbon content associated with primary particles <20 μm may be interpreted as the capacity of soil to protect C. This revised version was published online in June 2006 with corrections to the Cover Date. This revised version was published online in June 2006 with corrections to the Cover Date. This revised version was published online in June 2006 with corrections to the Cover Date.     

New roles for model genetic organisms in understanding and treating human disease: report from the 2006 Genetics Society of America meeting

Fundamental biological knowledge and the technology to acquire it have been immeasurably advanced by past efforts to understand and manipulate the genomes of model organisms. Has the utility of bacteria, yeast, worms, flies, mice, plants, and other models now peaked and are humans poised to become the model organism of the future? The Genetics Society of America recently convened its 2006 meeting entitled "Genetic Analysis: Model Organisms to Human Biology" to examine the future role of genetic research. (Because of time limitations, the meeting was unable to cover the substantial contributions and future potential of research on model prokaryotic organisms.) In fact, the potential of model-organism-based studies has grown substantially in recent years. The genomics revolution has revealed an underlying unity between the cells and tissues of eukaryotic organisms from yeast to humans. No uniquely human biological mechanisms have yet come to light. This common evolutionary heritage makes it possible to use genetically tractable organisms to model important aspects of human medical disorders such as cancer, birth defects, neurological dysfunction, reproductive failure, malnutrition, and aging in systems amenable to rapid and powerful experimentation. Applying model systems in this way will allow us to identify common genes, proteins, and processes that underlie human medical conditions. It will allow us to systematically decipher the gene-gene and gene-environment interactions that influence complex multigenic disorders. Above all, disease models have the potential to address a growing gap between our ability to collect human genetic data and to productively interpret and apply it. If model organism research is supported with these goals in mind, we can look forward to diagnosing and treating human disease using information from multiple systems and to a medical science built on the unified history of life on earth.     

Role of basic science in the development of new medicines: examples from the eicosanoid field

The role of basic science in the development of health care has received more and more attention. In my own area of research involving the so-called eicosanoids, there are many examples of how studies of structure and function of small molecules, as well as proteins and genes, have led to new therapeutic agents for treatment of a variety of diseases. In most of the cases, the discoveries have resulted in the recognition of novel therapeutic targets amenable to modulation by small molecules. However, there are also examples in which the molecular mechanisms of actions of drugs, discovered by phenotypic screening, have been elucidated. The majority of the examples in this article consist of approved drugs; however, in some cases, ongoing developments of potential therapeutics are cited.     

Two new species in the family Axinellidae (Porifera,Demospongiae) from British Columbia and adjacent waters

Two new species of Demospongiae are described for British Columbia and adjacent waters in the family Axinellidae, Auletta krautteri sp. n. and Dragmacidon kishinensis sp. n. They represent range extensions for both of these genera. Both are fairly commonly encountered, Auletta krautteri below diving depths (87 to at least 300 m) and Dragmacidon kishinensis in shallow water (intertidal to 30 m). We propose an amended genus diagnosis for Auletta to account for the variability among species in principal spicules that form the ascending tracts to be either oxeas, styles or strongyles rather than just oxeas.     

Athalamia hyalina (Sommerf.) S.Hatt. in Scotland,new to the British Isles

Abstract

The liverwort Athalamia hyalina (Sommerf.) S.Hatt. and the family Cleveaceae are reported as new to the British Isles from the eastern Scottish Highlands. The Scottish plants are described and illustrated and the significance of the discovery is assessed. In Scotland, Athalamia hyalina occurs on thin soil on eroding limestone ledges in a montane habitat with a continental climate. It is in active growth in the winter months, producing spores in spring. Its range is restricted but it occurs within a protected area and is not threatened at present. The species is widespread in the northern hemisphere.     

Sequence of the nucleoprotein gene from a virulent British field isolate of transmissible gastroenteritis virus and its expression in Saccharomyces cerevisiae

Subgenomic mRNA from a virulent isolate of porcine transmissible gastroenteritis virus (TGEV) was used to produce cDNA which was sequenced. Two non-overlapping open reading frames (ORFs) were identified. The largest, encoding a polypeptide of 382 amino acids (relative molecular mass (Mr) 43,483), was shown to be the viral nucleoprotein gene. The second ORF, found 3' to the larger ORF, encodes a polypeptide of 78 amino acids (Mr 9068) which has yet to be assigned to a viral product. The nucleoprotein gene was expressed in yeast cells under the control of two types of yeast promoters: the constitutive PGK promoter, and the inducible GAL1 promoter. Yeast cells containing recombinant plasmids, with the nucleoprotein gene in the correct orientation, produced a polypeptide of Mr 47,000, identical to the viral product, that reacted with a specific monoclonal antibody.     

Persistence with anti-tumour necrosis factor therapies in patients with psoriatic arthritis: observational study from the British Society of Rheumatology Biologics Register

Introduction  

Anti-TNF therapies represent a breakthrough in the treatment of severe psoriatic arthritis. However, little is known about long-term drug persistence with these treatments in patients with psoriatic arthritis in routine clinical practice. The aim of this study was to assess persistence with first-course and second-course treatment with anti-TNF agents in a prospective cohort of psoriatic arthritis patients and to identify factors associated with and reasons for drug discontinuation.     

Development of a technique to study seedling emergence in response to moisture deficit in the field —The seed bed environment*

The ability of crops of sorghum (Sorghum bicolor (L.) Moench) to establish in farmers' fields depends largely on its capacity to germinate and emerge under limited soil moisture conditions. Studies on germination under moisture stress have been previously conducted using osmotic media which do not wholly reproduce the conditions of the seed bed in the field. Hence the need for a field screening technique. A line source irrigation system was used to provide five moisture regimes ranging from -0.08 MPa to -0.92 MPa. The drying rate of the soil and the soil temperature depended largely on incident radiation, and the relationship between the moisture content and daily soil temperature and daily radiation was consistant. Total porosity of the seed bed, derived from bulk density measurements and particle density ranged from 43.8% to 45.3%, which would allow sufficient aeration when as in the experiments conducted here, water content was low (> 0.14 g/g). Under these seed bed conditions the pattern of response of emergence to the moisture gradient was linear or curvilinear. Genotypic differences existed for emergence and its response to water level. The field method developed is useful for identifying genotypes able to germinate and emerge under conditions of low seed bed moisture.