Shifts in small-bodied fish assemblages resulting from drought-induced water level recession in terminating lakes of the Murray-Darling Basin, Australia

Over-abstraction of water places unsustainable pressures on river ecosystems, with the impacts amplified under drought conditions. Freshwater fishes are particularly vulnerable due to associated changes in water quality, and habitat availability, condition and connectivity. Accordingly, fish assemblages are ideal indicators of the impacts of drought and over-abstraction. The Murray-Darling Basin (MDB), south-eastern Australia, terminates at the Ramsar listed Coorong and Lower Lakes, which comprise Lake Alexandrina and Lake Albert. Over-abstraction and extreme drought during the last decade has placed these lakes under severe environmental stress. The purpose of this study was to investigate shifts in fish assemblages caused by substantial water level recession and salinization in the Lower Lakes. Small-bodied fish assemblages were sampled at the beginning and several years into the drought. Off-lake habitats held diverse fish assemblages in 2003, but most sites were dry by 2009. Remaining habitats were disconnected, salinities increased substantially, and aquatic vegetation shifted from freshwater to salt-tolerant species. There was a substantial decline in the proportion of specialist species, especially diadromous and threatened species, and an emerging dominance of generalist freshwater and estuarine species. The findings warn of the inevitable ecological impact of over-allocating water for human use in drought-prone regions, and highlight the need for adequate environmental water allocations. This study also emphasises that understanding the ecological attributes of a fish species, and the subsequent assignment to a functional group, will help predict vulnerability to decline and extirpation.     

Threats to the indigenous freshwater fishes of Sri Lanka and remarks on their conservation

Sixty-two freshwater dispersant (26 endemic), 26 saltwater dispersant and 20 exotic fishes have been recorded from Sri Lanka's inland waters. The discovery of nine new species of freshwater fish during the past decade suggests that Sri Lanka's fish fauna is not yet well known and that further discoveries can be expected. All the new species, and almost all the endemic ones, have been recorded from forested areas in the foothills of the southwestern wet zone and the Knuckles hills. The known ranges of many species are exceedingly small; almost all of them are habitat specialists. 25 species have at least two strong habitat preferences (in almost all case, shade being one), though a majority (32 species) have none. Habitat alteration is therefore the greatest threat to their survival.Eight freshwater fish species are considered endangered and a further five, vulnerable. Three species are rare, 18 common and 13 abundant. All but two of the endangered species and all the vulnerable species are endemic in Sri Lanka. Nine species are each restricted to only one drainage basin, and seven have a known range < 50 km². Three species of diadromous gobies known only from small populations are considered vulnerable.Examination of the existing threats suggest that deforestation, the widespread dispersion of exotics, pollution caused by agricultural chemicals and increasing pressure from the food fishery present the greatest threats to fish populations. While the endemic fishes are restricted to or most abundant in the wet zone, the overwhelming extent (> 95%) of Sri Lanka's nature reserve areas are in the dry zone. A programme to maintain self-sustaining captive populations of the endangered species is urgently necessary.     

Fishes of floodplain habitats of the Fly River system, Papua New Guinea, and changes associated with El Niño droughts and algal blooms

Biological monitoring of the Fly River system in Papua New Guinea has shown that floodplain habitats (oxbow lakes, blocked valley lakes and seasonally inundated grassed floodplain) support diverse and abundant populations of freshwater fishes. Since monitoring first commenced in the early 1980's, a total of 66 fish species representing 33 families has been sampled, with gillnets and rotenone, from a range of sites located on the floodplains of the Fly and Strickland rivers. The fish fauna was dominated by catfishes in the families Ariidae (11 species) and Plotosidae (7 species), with aquatic invertivores being the dominant feeding group. Herring species (Nematalosa spp.) were often very abundant in the oxbow lakes, forming 66% of the total catch in all the floodplain habitats. The fish communities in the oxbow lakes and blocked valley lakes were distinctly different, with several of the smaller fish species being more abundant in the blocked valley lakes, while the oxbow lakes supported more of the larger predatory species. Catches in the oxbow lakes were also generally higher and more diverse than the blocked valley lakes or grassed floodplain sites. Since the commencement of monitoring, catches from the floodplain sites have varied considerably, both spatially and temporally. Reduced catches seen at some sites are probably associated with natural climatic factors, particularly El Niño-induced droughts and algal blooms. Introduced species and increased commercial and artisanal fishing may also be affecting stocks of native fish. Fish populations were shown to recover only slowly in lakes affected by severe drought conditions, with extensive mats of floating grasses hindering fish recolonisation. Fish stocks in a lake affected by an algal bloom recovered more quickly than stocks in lakes affected by drought.     

A review of the influence of biogeography,riverine linkages,and marine connectivity on fish assemblages in evolving lagoons and lakes of coastal southern Africa

The Holocene evolution of eight South African coastal lakes and lagoons is examined and related to changes in fish composition over that period. Historical and current connectivity with riverine and marine environments are the primary determinants of present‐day fish assemblages in these systems. A small and remarkably consistent group of relict estuarine species have persisted in these coastal lakes and lagoons. The loss or reduction of connectivity with the sea has impacted on the diversity of marine fishes in all eight study systems, with no marine fishes occurring in those water bodies where connectivity has been completely broken (e.g. Sibaya, Groenvlei). In systems that have retained tenuous linkages with the sea (e.g., Verlorenvlei, Wilderness lakes), elements of the marine fish assemblage have persisted, especially the presence of facultative catadromous species. Freshwater fish diversity in coastal lakes and lagoons is a function of historical and present biogeography and salinity. From a freshwater biogeography perspective, the inflowing rivers of the four temperate systems reviewed here contain three or fewer native freshwater fishes, while the subtropical lakes that are fed by river systems contain up to 40 freshwater fish species. Thus, the significantly higher fish species diversity in subtropical versus temperate coastal lakes and lagoons comes as no surprise. Fish species diversity has been increased further in some systems (e.g., Groenvlei) by alien fish introductions. However, the impacts of fish introductions and translocations have not been studied in the coastal lakes and lagoons of South Africa. In these closed systems, it is probable that predation impacts on small estuarine fishes are significant. The recent alien fish introductions is an example of the growing threats to these systems during the Anthropocene, a period when human activities have had significant negative impacts and show potential to match the changes recorded during the entire Holocene.     

基于环境DNA宏条形码技术的北京地区鱼类多样性调查和外来鱼种入侵风险评估

[目的]调查北京地区鱼类多样性和群落分布及评估外来鱼种的入侵风险.[方法]选取北京地区水库、湖泊和河流3种水体类型共33个采样点,于2020年6月10—17日开展水生态监测,利用环境DNA宏条形码技术对各样点的鱼类多样性和群落结构进行监测和分析,对目前北京地区水生态系统中本地鱼种和外来鱼种进行分类汇总,并评估典型外来入...     

The icthyofauna of the Mhlathuze coastal lakes: some preliminary results

The fish faunas of the four Mhlathuze coastal lakes and the lower river comprise a diverse assortment of over fifty marine, estuarine and freshwater species. Three freshwater species are endemic to KwaZulu-Natal and nine estuarine species are endemic to southern Africa. Five species are of conservation significance. Species numbers in Lakes Mzingazi and Cubhu are similar historically and both lakes served as secondary nursery habitats for estuarine associated fishes. This role has been impacted by the construction of weirs at their outlets which prevent successful recruitment of estuarine species, especially during drought years when lake water levels are low. The fish faunas of Lakes Nsezi and Mangeza are depauperate and lack marine or estuarine components. In order that these systems fulfil their potential function as secondary nursery habitats to many estuarine fish species, minimum lake water levels must be set to ensure sufficient outflows at proposed fish ladders during critical spawning and migration times.     

An Analysis of Fish Species Richness in Natural Lakes

There is a growing recognition of the need to conserve biodiversity that has been conceptualised in the Convention of Biological Diversity. Maintenance of fish species richness is particularly important, because habitat degradation in inland waters continues to accelerate on a global scale. Here we develop empirical models for predicting fish species richness in natural lakes in various geographical regions of the world. In tropical lakes where fish biodiversity is richer than in temperate lakes, fish species richness can be predicted by a few variables such as lake area and altitude. Low fish species richness in most temperate lakes might be due to the effect of glaciation on colonisation and speciation of fishes. In US, Canadian and northern European lakes, lake acidification is one of the important factors influencing fish species richness. Although limnological characteristics influence fish species richness in temperate lakes, lake area and altitude have greater predictive power. This is in contrast to fish species richness in rivers, which can be reliably predicted by basin area. In the power curves, which describe the relationship between fish species richness and habitat size in lakes and rivers, the exponent is always greater in tropical regions than in temperate regions. Because fish biodiversity is greater in the tropics threats to fish biodiversity through habitat degradation are greater than those in temperate inland waters.     

Habitat fragmentation and extinction rates within freshwater fish communities: a faunal relaxation approach

Aim To estimate population extinction rates within freshwater fish communities since the fragmentation of palaeo‐rivers due to sea level rise at the end of the Pleistocene; to combine this information with rates estimated by other approaches (population surveys, fossil records); and to build an empirical extinction–area relationship. Location Temperate rivers from the Northern Hemisphere, with a special focus on rivers discharging into the English Channel, in north‐western France. Methods (1) French rivers. We used a faunal relaxation approach to estimate extinction rates in coastal rivers after they became isolated by the sea level rise. Tributaries within the Seine were used to build a species–area relationship for a non‐fragmented river system to predict species richness in coastal rivers before their fragmentation. (2) Other rivers. Extinction rates obtained for four other Holarctic river systems fragmented at the end of the Pleistocene, the fragmented populations of one salmonid species (Japan) and the fossil records from the Mississippi Basin were included in the study. Results (1) French rivers. Within strictly freshwater fish species, rare and/or habitat specialist species were the most affected by fragmentation. In contrast, euryhaline species were not affected. A negative relationship between extinction rate and river basin size was observed. (2) Other rivers. Our study established a common scaling relationship for freshwater fish population extinction rates that spans seven orders of magnitude in river basin size. Main conclusions This study strongly suggests that extinctions of fish populations occurred within French coastal rivers after they became isolated 8000 years ago. The patterns observed at regional and inter‐continental scales are consistent with the expectation that large populations are less prone to extinction than small ones, resulting in a strong extinction–area relationship coherent over a large spatio‐temporal scale. Our study is the first multi‐scale quantitative assessment of background extinction patterns for freshwater fishes.     

The influence of habitat on the spatial variation in fish assemblage composition in an unimpacted tropical River of Ganga basin, India

Effects of local habitat variables on the structure of fish assemblage were evaluated from 50 sampling sites in a tropical River of Central India of the Ganges basin with limited anthropogenic disturbance covering premonsoon, monsoon and postmonsoon periods. Data were analyzed for 5,186 fish individuals of 24 freshwater fish species of conservation and fishery management interest. Out of the total fish species, seven belong to the ??endangered?? and 8 belong to the vulnerable category. A Cyprinid, Puntius sarana, was the most widely distributed species (frequency of occurrence 76%) out of the total species in this study. We used canonical correspondence analyses to determine the influence of environmental conditions on species occurrences and assemblage characteristics. Regarding the microhabitat, hydromorphological parameters (depth and current velocity) followed by temperature, turbidity and total dissolve solid were of significant for the structure of the fish community. Conductivity was another important factor that explained the major proportion of the variability affecting fish in their habitat choice. The other local habitat variables like overhanging vegetation and land use were of secondary but significantly important for the assemblage of the fishes. Our results suggests the importance of local environment influences on the fishes of conservation importance and their assemblage characteristics in an unimpacted river and provide a framework and reference conditions to support restoration efforts of relatively altered fish habitats in tropical rivers of India.     

Hierarchical large-scale to local-scale influence of abiotic factors in summer-fragmented Mediterranean rivers: structuring effects on fish distributions,assemblage composition and species richness

Summer rainfall shortage and low or no flows in Mediterranean rivers make it difficult for fish to attain their final preferenda and hinder the assembling of fish communities. We investigated in this study the degree to which large-scale features of the watersheds and reach-scale habitats correlated with a non-random structure of fish species' richness, composition and distribution under these conditions by intensively sampling a river system during summer and using Geographical Information Systems data. The results of multivariate ordination and association analyses showed that multi-scale factors were hierarchically related and that they correlated with non-random fish distributions and assemblage structure. They also highlighted large-scale factors shaping reach-scale water availability for fish during summer. Fish species' richness, composition and distribution varied along a gradient of water shortage and connectivity loss which were more severe with the smaller drainage area into the reaches upstream. Fish species' distributions along these gradients were strongly correlated with both life-history traits (adult size) and biogeographical origin (native vs. exotic). The results for the summer environmental segregation of exotic versus small endemic richness characteristics indicate strong species' interactions forcing the latter into the upstream, harsher seasonal habitats. Special fitness costs are to be expected in drought years, in regulated rivers, and in general, in a climate change scenario in Mediterranean river networks. The study emphasizes that the conservation of the threatened Mediterranean freshwater fish faunas requires operating at the proper spatial scale. In particular, reach-scale habitat improvements are adequate but not enough during the summer in fragmenting river networks, unless there is proper watershed-scale management of the flow regimes.     

Small fish, big fish, red fish, blue fish: size-biased extinction risk of the world's freshwater and marine fishes

Aim  In light of the current biodiversity crisis, there is a need to identify and protect species at greatest risk of extinction. Ecological theory and global-scale analyses of bird and mammal faunas suggest that small-bodied species are less vulnerable to extinction, yet this hypothesis remains untested for the largest group of vertebrates, fish. Here, we compare body-size distributions of freshwater and marine fishes under different levels of global extinction risk (i.e. listed as vulnerable, endangered or critically endangered according to the IUCN Red List of Threatened Species ) from different major sources of threat (habitat loss/degradation, human harvesting, invasive species and pollution).
Location  Global, freshwater and marine.
Methods  We collated maximum body length data for 22,800 freshwater and marine fishes and compared body-size frequency distributions after controlling for phylogeny.
Results  We found that large-bodied marine fishes are under greater threat of global extinction, whereas both small- and large-bodied freshwater species are more likely to be at risk. Our results support the notion that commercial fishing activities disproportionately threaten large-bodied marine and freshwater species, whereas habitat degradation and loss threaten smaller-bodied marine fishes.
Main conclusions  Our study provides compelling evidence that global fish extinction risk does not universally scale with body size. Given the central role of body size for trophic position and the functioning of food webs, human activities may have strikingly different effects on community organization and food web structure in freshwater and marine systems.     

Dispersal through stream networks: modelling climate‐driven range expansions of fishes

Aim To incorporate dispersal through stream networks into models predicting the future distribution of a native, freshwater fish given climate change scenarios. Location Sweden. Methods We used logistic regression to fit climate and habitat data to observed pike (Esox lucius Linnaeus) distributions in 13,476 lakes. We used GIS to map dispersal pathways through streams. Lakes either (1) contained pike or were downstream from pike lakes, (2) were upstream from pike lakes, but downstream from natural dispersal barriers, or (3) were isolated from streams or were upstream from natural dispersal barriers. We then used climate projections to model future distributions of pike and compared our results with and without including dispersal. Results Given climate and habitat, pike were predicted present in all of 99,249 Swedish lakes by 2100. After accounting for dispersal barriers, we only predicted pike presence in 31,538 lakes. Dispersal barriers most strongly limited pike invasion in mountainous regions, but low connectivity also characterized some relatively flat regions. Main conclusions The dendritic network structure of streams and interconnected lakes makes a two‐dimensional representation of the landscape unsuitable for predicting range shifts of many freshwater organisms. If dispersal through stream networks is not accounted for, predictions of future fish distributions in a warmer climate might grossly overestimate range expansions of warm and cool‐water fishes and underestimate range contractions of cold‐water fishes. Dispersal through stream networks can be modelled in any region for which a digital elevation model and species occurrence data are available.     

中国东部沿海中小型河流鱼类的整体遗传多样性评价——以曹娥江为例

研究将曹娥江作为东部沿海中小型河流代表, 基于线粒体细胞色素b基因(Cyt b)分子标记对其鱼类的整体遗传多样性水平进行了评估。结果表明, 21个种26个群体鱼类Cyt b基因的单倍型多样性指数(h)和核苷酸多样性指数(π)水平分别为0.074—0.987和0.00019—0.00520, 物种间遗传多样性水平差异较大; 比较不同江段鱼类遗传多样性水平发现, 曹娥江鱼类的单倍型多样性指数水平从河口到中下游再到上游逐渐降低(P<0.05)。比较同一物种的遗传多样性水平发现, 曹娥江鱼类的核苷酸多样性指数水平低于长江、珠江等大型河流鱼类的相应指数水平(P<0.05), 提示曹娥江鱼类的整体遗传多样性处于中等偏下水平, 鱼类资源亟需科学的保护和修复。进一步分析人为扰动因素对曹娥江鱼类遗传多样性水平的影响发现, 敏感型鱼类的单倍型多样性指数水平显著低于中等耐受型鱼类(P<0.05); 麦穗鱼(Pseudorasbora parva)、光泽黄颡鱼(Pelteobagrus nitidus)和刺鳅(Mastacembelus aculeatus)3种鱼类的上游镜岭群体单倍型多样性指数和核苷酸多样性指数水平均低于其中游仙岩群体的相应指数水平。结果提示, 水体污染、过度捕捞可能是造成目前曹娥江鱼类遗传多样性水平较低的主要原因。研究结果将为曹娥江乃至东部中小河流的鱼类资源的管理、保护和开发利用提供重要的理论依据。     

The influence of freshwater flows on two estuarine resident fish species show differential sensitivity to the impacts of drought,flood and climate change

Estuaries are particularly susceptible to climate change and drought resulting in atypical changes to freshwater flows. How such changes in flow impact on the ecology of estuarine fishes may depend on how a species moves in response to changing flow conditions. Acoustic telemetry was used to interpret fine-scale movements of two co-inhabiting estuarine fish species, black bream, Acanthopagrus butcheri and estuary perch, Macquaria colonorum in relation to freshwater flows, season and moon phase. We found black bream to be highly mobile, regularly travelling the length of the estuary and into the neighbouring estuaries. In contrast, estuary perch had particular home ranges and made occasional, upstream or downstream movements. Possibly influenced by freshwater flows, estuary perch moved at greater rates in the Tambo compared to fish in the Mitchell. Black bream resided in the upper estuary during winter and spring and the lower estuary during summer and autumn, whereas estuary perch remained in the upper estuary throughout the year, with occasional downstream movements in winter and spring. This study revealed 1) significantly large increases in freshwater flows result in mass downstream movements in both species, 2) fish moved upstream during full moons and 3) there are contrasting spatio-temporal patterns in movement between species. The results from this study highlight that estuarine fishes are likely to show differential sensitivity to the impacts of drought and climate change and illustrate how acoustic telemetry methods can be used to determine the environmental needs of fishes and help efforts to conserve and manage estuaries worldwide.     

Distribution of the freshwater fishes of Japan: an historical overview

Japanese freshwater fishes, including lampreys, comprise 15 orders, 35 families, and 96 genera, with 211 species and subspecies. Most belong to the families Cyprinidae (29% of species and subspecies), Gobiidae (21%), Salmonidae (10%), and Cobitidae (8%). Cyprinids and cobitids presumably originated from east Asia, gobiids from southeast Asia, and cottids and salmonids from the north Pacific. Japanese freshwater fishes include 88 endemic species and subspecies, of which three have been extirpated. Fishes introduced into natural rivers and lakes for inland commercial fisheries and sport fishing, and by accident, include many exotic species, of which 23 now inhabit natural freshwaters. These often have destroyed the local fish fauna by predation, and caused genetic pollution by hybridization with local strains. Destruction of freshwater environments by land development also poses a threat to Japanese freshwater fish communities. In addition Japanese freshwater systems have been markedly altered by development of rice paddy fields which have caused some species to decline but others to flourish, and changed the distribution patterns of fishes between upstream and downstream areas. To conserve endangered species and declining communities of Japanese freshwater fishes, we need to clarify the characteristics of their original habitats and the effects of developing paddy fields, from both the ecological and historical points of view.     

The nature of fish communities: A factor influencing the fishery potential and yields of tropical lakes and reservoirs

The discrepancy between high primary production and poor fish yields in some tropical reservoirs, especially in Souht East Asia, is apparently due to the fact that not all available trophic levels are utilized. Data analysis has shown that this is due to the riverline origin of fish communities which are not well adapted to lacustrine habitats in such lakes and reservoirs. These fishes are able to inhabit only a relatively narrow belt of the shallow inshore area. It has been shown that fish are rare in the deep water and pelagial area of geologically young lakes and reservoirs. Although most riverine fish are also able to inhabit the lacustrine habitat, only a few are preadapted to take advantage of deep or open water environments. In the tropics, Cichlidae and freshwater Clupeidae thrive in lakes and reservoirs. It is apparent that within these families suitable species can be chosen as potential candidates for introduction into young lakes and reservoirs. However, any fish introductions must be scientifically evaluated for desirability. Data from other lakes in the world have indicated that the present theory can be expanded to other than tropical lakes.     

Elevated river discharge enhances the immigration of juvenile catadromous and amphidromous fishes into temperate coastal rivers

Anthropogenic alterations to river flow regimes threaten freshwater biodiversity globally, with potentially disproportionate impacts on species that rely on flow cues to trigger critical life history processes, such as migration for diadromous fishes. This study investigates the influence of river discharge on the abundance of juvenile fish moving into rivers by four temperate catadromous or amphidromous species (common galaxias Galaxias maculatus, spotted galaxias Galaxias truttaceus, climbing galaxias Galaxias brevipinnis and the threatened Australian grayling Prototroctes maraena). Fyke netting or fishway trapping was used to catch juvenile fish moving from estuaries into freshwater in five coastal waterways in south-eastern Australia during the spring migratory period. There was a positive relationship between the probability of high catch rates and mean discharge in September. We also found a positive relationship between discharge and the number of recruits captured 22–30 days later in a flow stressed system. In addition, day-of-year had a strong influence on catch rates, with the peak abundance of juveniles for three species most likely to occur midway through the sampling period (spotted galaxias in October, climbing galaxias in late October and Australian grayling in late October and early November). Our study shows that higher magnitudes of river discharge were associated with increased catches of juvenile catadromous and amphidromous fishes. With a limited supply of environmental water, environmental flows used to enhance immigration of these fishes may be best targeted to maintain small amounts of immigration into freshwater populations in waterways or years when discharges are low and stable. When there are natural, large discharge volumes, relatively large numbers of juvenile fish can be expected to enter coastal waterways and during these times environmental flows may not be required to promote immigration.     

Hydropower-related pulsed-flow impacts on stream fishes: a brief review,conceptual model,knowledge gaps,and research needs

The societal benefits of hydropower systems (e.g., relatively clean electrical power, water supply, flood control, and recreation) come with a cost to native stream fishes. We reviewed and synthesized the literature on hydropower-related pulsed flows to guide resource managers in addressing significant impacts while avoiding unnecessary curtailment of hydropower operations. Dams may release pulsed flows in response to needs for peaking power, recreational flows, reservoir storage adjustment for flood control, or to mimic natural peaks in the hydrograph. Depending on timing, frequency, duration, and magnitude, pulsed flows can have adverse or beneficial short and long-term effects on resident or migratory stream fishes. Adverse effects include direct impacts to fish populations due to (1) stranding of fishes along the changing channel margins, (2) downstream displacement of fishes, and (3) reduced spawning and rearing success due to redd/nest dewatering and untimely or obstructed migration. Beneficial effects include: (1) maintenance of habitat for spawning and rearing, and (2) biological cues to trigger spawning, hatching, and migration. We developed a basic conceptual model to predict the effects of different types of pulsed flow, identified gaps in knowledge, and identified research activities to address these gaps. There is a clear need for a quantitative framework incorporating mathematical representations of field and laboratory results on flow, temperature, habitat structure, fish life stages by season, fish population dynamics, and multiple fish species, which can be used to predict outcomes and design mitigation strategies in other regulated streams experiencing pulsed flows.     

Colonization of an artificial stream by fishes and aquatic macro-invertebrates

We examined colonization by fishes and macro-invertebrates from permanent streams into an artificial freshwater stream simulating lotic temporary bodies of water that exist for only a limited period each year. After introducing water, invertebrates such as chironomid larvae in mud increased in numbers rapidly in the experimental stream, although they were rare in mud in the permanent streams. Eleven of 12 fish species present in the permanent streams colonized the experimental stream and preyed upon invertebrates, although fish composition differed significantly between the two streams. About 100 days after the initiation of the experiment, both species richness and diversity in the experimental stream reached almost the same level as that in the permanent streams. More diverse fishes colonized the complex section where habitat diversity was high compared to the simple section in the experimental stream. Our study strongly suggests that lotic temporary waters such as temporary streams around main rivers have unique ecological characteristics and serve as valuable foraging sites for fish.