Fish zonations and guilds as the basis for assessment of ecological integrity of large rivers

Longitudinal zonation concepts describe the downstream changes in chemico-physical and biological properties of rivers. Including information on ecological fish guilds can enhance the usefulness of fish zonation concepts, in a way that they can be used as tools for assessment and management of the ecological integrity of large rivers. We present an ecological characterization of fish zones and fish communities in near-natural and in regulated large rivers in Europe (the River Doubs in France and the Rivers Rhine and Meuse in the Netherlands), using guild classifications of several life-history traits of fish and national Red Lists of threatened species. The Doubs data set was also analyzed using indices of the sensitivity of fish species to environmental degradation and indices for eurytopy. In these rivers, the number of ecological guilds per zone increases downstream, and there are clear shifts in the structure of the guilds. Flow preference and reproduction ecology of river fish are closely linked. The proportion of rheophilic species in the fish community decreases downstream, and the proportions of limnophilic and eurytopic species increase. Lithophilic and psammophilic spawners are dominant in the upper zones, whereas the lower zones are dominated by phytophilic and phytolithophilic spawners. The proportion of zoobenthivorous and periphytivorous species decreases downstream, and the proportion of zooplanktivorous and phytivorous species increases. However, because the European fish fauna mainly consists of feeding generalists, the discriminative abilities of simplistic feeding guild classifications are not very high. Guilds of sensitive, stenoecious species that share life history strategies that are highly adapted to specific riverine conditions (rheophils and limnophils) have declined far more than generalist species that can survive in a wide range of habitats that are not characteristic of natural river ecosystems. Because of the subsequent over-abundance of the eurytopic species the original longitudinal fish zonations are hardly recognizable anymore in heavily impacted large rivers such as the River Rhine. Hence these rivers do not meet the criteria for ecological integrity. Within a specific fish region, a suitable way of analyzing and monitoring the impact of human disturbance on the structure of the fish community is by comparing the guild structure of the present state of a fish zone with that of the reference situation.     

Fish habitat rehabilitation using wood in the world

To provide river managers and researchers with practical knowledge about fish rehabilitation, various studies of fish habitat rehabilitation that used wood were reviewed. The review focuses on fish responses, wood installation methods, and geomorphic features of the rehabilitation sites. Most studies were conducted in moderately sized (small and medium) streams with relatively high bed gradients and aimed to improve the habitats of salmonid species. In this stream type, structures spanning the full (log dam) and partial (log deflector) width of the river were most common, and wood structures that created pools and covers were successful in improving fish habitat. Some projects were conducted in moderately sized low-gradient streams, in which wooden devices used to create instream cover were effective for fish assemblages. There were few studies in other aquatic ecosystems. However, well-designed large wood structures, known as engineered log jams, were used in rehabilitation projects for large rivers. In slack-water or lentic systems such as side-channels, estuaries, and reservoirs, small and large wood structures that created cover were used to improve habitat for many fish species. For successful fish habitat rehabilitation projects, the hydrogeomorphic conditions of rehabilitation sites should be carefully examined to avoid physical failure of wood structures. Although artificial wood structures can be used to improve fish habitat in various aquatic ecosystems, they should be considered to be a complementary or interim habitat enhancement technique. The recovery of natural dynamic processes at the watershed scale is the ultimate target of restoration programs.     

Habitat Use of Fish Communities in A Virginia Stream System

Fish habitat use during summer was examined at micro- and meso-levels, to determine species associations in the upper Roanoke River watershed, Virginia. Based on multivariate-mesohabitat analysis and examination of mean microhabitat use, seven habitat-use guilds were apparent. These included four rheophilic (fast-riffle, riffle/run, fast-generalist, and shallow-rheophilic) and three limnophilic guilds (pool/run, open-pool, and pool-cover) that were reasonably robust across two river segments and two years. Although simple-hydraulic, bottom-topographic, and turbulence variables all segregated fish habitat-use guilds, turbulence variables were redundant with simple-hydraulic variables, substratum use by limnophilic fishes was related to availability, and only one guild consistently selected high cover levels. At the family level, suckers, darters, and especially minnows were notable for occupying several habitat-use guilds, because of species differences in habitat preferences. Such formulation of guilds can simplify habitat-impact analyses in biodiverse, warmwater streams, via focus on habitat needs of guilds rather than on individual species.     

Structural and functional responses of floodplain vegetation to stream ecosystem restoration

Most river restoration projects have applied relatively small-scale measures focused on improving specific instream conditions, with only limited outcomes for biodiversity in rivers and their adjacent riparian habitats. Here, we investigate the effects of both small- and large-scale restoration projects on floodplain vegetation across 20 European catchments. We focused on the roles of different restoration parameters (i.e., the number, spatial extent and type of restoration measure applied and restoration age) and specific environmental characteristics in regulating changes in plant diversity and trait composition following restoration. Among restoration characteristics, restoration type was the only significant determinant of plant community responses, with stream channel widening having the strongest effects, particularly on the diversity and composition of species traits favoured by increases in physical disturbance (e.g. flooding) and open habitat patch availability (e.g. plant growth form, life strategy and life span). Of the environmental variables, altitude and discharge were positively and most strongly related to responses of both species and trait diversity. Our results emphasise the value of (i) choosing relevant restoration measures that affect environmental conditions of importance for the target organism group and (ii) conducting restoration projects in environmental settings where the likelihood of restoration “success” is maximised.     

A preliminary fish assemblage index for a transitional river–reservoir system in southeastern Brazil

Large river–reservoir systems are some of the most difficult aquatic ecosystems to assess because: (1) they typically lack minimally disturbed reference sites; (2) the reservoirs are not natural systems to begin with; and (3) reservoirs with high exchange rates are transitional systems between rivers and lakes. These features are further complicated in Brazil where fish species taxonomy is incomplete (let alone fully described ecologically), where waters naturally have high organic and thermal loadings, and where dams and reservoirs provide most of the nation's electricity and water supplies. As a first step towards generating a biological tool for assessing the effects of reservoirs on rivers, we developed a preliminary River–Reservoir Fish Assemblage Index (RRFAI) in a transitional river–reservoir system in southeastern Brazil. To do so, we gill-netted fish monthly between October 2006 and September 2007 (excluding May and July 2007) immediately upriver of the reservoir, in the upper reservoir, in the lower reservoir, and immediately downriver of the reservoir. In developing our RRFAI we sought fish assemblage metrics to represent ecological characteristics including richness, habitat, trophic, tolerance, and resilience guilds. Despite clear differences in fish assemblage composition between river and reservoir sites, we found 9 metrics common to both systems that were nonredundant and had low sampling variability (number of native species, number of characiform species, number of siluriform species, % omnivorous individuals, % invertivorous individuals, % non-native carnivorous individuals, % intolerant individuals, % tolerant individuals, number of tolerant species). Fish assemblage condition was significantly and consistently lower in the lower reservoir. There was no significant difference between the dry and wet season in RRFAI scores, suggesting that a single season sample should usually suffice. Further research is needed along distinct disturbance gradients in multiple river–reservoir systems in Brazil to confirm the sensitivity of our preliminary RRFAI for assessing the physical and chemical habitat disturbances common to such systems.     

Biotic interactions enhance survival and fitness in the caddisfly <Emphasis Type="Italic">Micropterna sequax</Emphasis> (Trichoptera: Limnephilidae)

Fish-based index of biotic integrity (F-IBI) is widely used to assess river ecosystems. With survey data from the Yellow River fishery resources in the 1980s and 2008, fish composition and abundance, vertical distribution, trophic structure, reproductive guilds and tolerance in the river’s upstream, midstream, downstream, and estuary were examined, and F-IBI systems were established for each reach to assess river ecosystem health. Results showed that compared to the 1980s, the number of fish species in 2008 sharply declined in the midstream and downstream reaches, percentage of benthic fish species decreased in upstream and estuary, the number and percentage of omnivorous species decreased in all reaches, and percentage of tolerant fish species increased 15 times in upstream but decreased in midstream and downstream. The F-IBI scores in the four reaches in the 1980s were all higher than those in 2008 and decreased from upstream to estuary; the healthy conditions indicated by F-IBI scores in the 1980s were “good,” “fair,” “poor,” and “fair” from upstream to estuary and “degraded” to “poor” in all the reaches in 2008. This indicated that the river ecosystem has degraded from the 1980s to 2008. This was also shown by variations in water chemistry.     

Regional and longitudinal patterns of fish community structure in the Seine River basin, France

The fish communities of 371 sites from 4 natural regions of the Seine River basin were studied. The sites were located from small to medium size rivers (catchment area : 5 to 3895 km²). We examined the differences between local communities according to river size (estimated by catchment area) and region. In the Seine River basin, fish communities follow a general organisation rule: total species richness increases with river size and importance of limnophilic species versus rheophilic ones increases from upstream to downstream. However, fish communities show differences of total species richness, species richness of reproductive groups and species composition between the four natural regions of the basin. Particularly, river size and regional organisation of environmental factors interact on species composition of communities and several regional patterns of longitudinal changes of fish communities are identified. The origin and range of regional differences of fish communities are discussed according to historical and environmental factors.     

Modelling habitat distributions for multiple species using phylogenetics

In this paper, we describe an empirical approach to model community structure using phylogenetic signals. That approach combines information about the species (i.e. traits and phylogeny) with information about the habitat (i.e. environmental conditions and spatial distribution of sampling sites) and their interactions to predict the species responses (e.g. the local densities). As an application, we use the approach to model fish densities in rivers. In the model, the different species and size classes were described using a functional trait, body length, and phylogenetic eigenvectors maps whereas the sites were described using water velocity, depth, substrate composition, macrophyte cover, degree‐days, total phosphorus, and spatial eigenvector maps. The model (estimated using a regularised Poisson‐family generalised linear modelling approach) fitted the data well (likelihood‐based R²_adj = 0.512) and showed fair predictive power (likelihood‐based cross‐validation R² = 0.283) to predict the density of fish pertaining to 48 species totalling 143 combinations of species and size classes in 15 unregulated Canadian rivers. Using the model as a baseline to estimate the effect of flow regulation on community composition, we found that, with few exceptions, the densities of most fish species were lower in regulated than in unregulated rivers. Phylogenetics have been proposed to study community structure, but this is, to our knowledge, the first time phylogenetic information is used explicitly for numerical habitat modelling. We expect that models of that type will be in increasing demand now that development projects are routinely assessed through impact studies.     

Influence of lateral gradients of hydrologic connectivity on trophic positions of fishes in the Upper Mississippi River

1. Riverscapes consist of the main channel and lateral slackwater habitats along a gradient of hydrological connectivity from maximum connection in main channel habitats to minimum connection in backwaters. Spatiotemporal differences in water currents along this gradient produce dynamic habitat conditions that influence species diversity, population densities and trophic interactions of fishes. 2. We examined the importance of lateral connectivity gradients for food web dynamics in the Upper Mississippi River during spring (high flow, moderately low temperatures) and summer (low flow, higher temperatures). We used literature information and gut contents analyses to determine feeding guilds and stable isotope analysis to estimate mean trophic position of local fish assemblages. During June and August 2006, we collected over 1000 tissue samples from four habitats (main channel, secondary channels, tertiary channels and backwaters) distributed within four hydrologic connectivity gradients. 3. Mean trophic position differed among feeding guilds and seasons, with highest values in spring. Mean trophic position of fish assemblages, variability in trophic position and food chain length (maximum trophic position) of the two dominant piscivore species (Micropterus salmoides and M. dolomieu) in both seasons were significantly associated with habitat along the lateral connectivity gradient. Food chain length peaked in tertiary channels in both seasons, probably due to higher species diversity of prey at these habitats. We infer that food chain length and trophic position of fish assemblages were lower in backwater habitats in the summer mainly because of the use of alternative food sources in these habitats. 4. A greater number of conspecifics exhibited significant among‐habitat variation in trophic position during the summer, indicating that low river stages can constrain fish movements in the Upper Mississippi River. 5. Results of this study should provide a better understanding of the fundamental structure of large river ecosystems and an improved basis for river rehabilitation and management through knowledge of the importance of lateral complexity in rivers.     

Key factors determining water quality,fish community dynamics,and the ecological health in an Asian temperate lotic system

Identifying the key determinants and their impacts on water quality and fish community structure is imperative to environmental assessment and ecosystem conservation. The main objectives of this study were to assess the factors driving water quality, fish assemblages, and ecological health in a temperate lotic ecosystem using a long-term (12 years) dataset. The results indicate that sewage treatment plants significantly negatively impact river water quality and are primary pollution sources. Temporal fluctuations showed that the summer monsoon adversely influenced TN and EC due to dilution effects while increasing the COD and TSS in the water. Annual variations and the Mann–Kendall test demonstrated increasing trends in COD, TN:TP ratio, and CHL-a but a decreasing trend of TP with the impoundment. Artificial barriers (weirs) in the river created more favorable algal growth conditions due to increased water residence time. COD and TSS levels in the river were significantly affected by soil erosion. The environmental disturbance measures index indicated that all sites were severely degraded. Fish composition analysis suggested that exotic fish species such as, Lepomis macrochirus and Micropterus salmoides, dominated the community structure and negatively impacted native species after the installation of weirs. Our findings indicate that fish guilds and the IBI model are controlled by nutrient enrichment, organic matter, algal production, and land use/land cover. Water quality governs the biological health of the river. Overall, evaluation of the river's ecological health based on the multi-metric WPI and the IBI revealed that the river has a “poor” to “very poor” ecological status. The outcomes of this study may aid policymakers in managing and restoring the river.     

Impact of terrestrial protected areas on the fish diversity and habitat quality: Evidence from tropical river Pranhita,India

The conservation and management of inland fish and freshwater ecosystems immensely contribute to global sustainable development. The existing ‘Protected Area’ (PA) network does not represent freshwater resources well and seldom considers its fish communities, while designating PAs. A study was undertaken to quantitatively assess the role played by the three terrestrial PAs (IUCN category IV) in conserving fish diversity and preserving habitat quality in the river reaches bordering the three PAs of the river Pranhita. It is a unique river system in the Indian Deccan Plateau in terms of fish diversity and community structure. Field surveys were conducted during the non-monsoon and monsoon seasons in 2020–21, that recorded 53 species including endemic and threatened fishes from river Pranhita, which represent more than one-third the number of fish species of Telangana state. The higher diversity and lower dominance index value (p < 0.01) reported in PAs compared to Eco Sensitive Zones and unprotected areas during the non-monsoon season indicate the role of intact physical habitat in providing refuges to the fish species in monsoon dependent tropical rivers. The optimal water quality revealed no significant difference (p > 0.0001) between protected and unprotected river reaches, and healthy biotic integrity assessed on the basis of fish community structure was attributed to the contiguous flow and less anthropogenic disturbance. This study supports that it can be considered as a representative zone for the conservation and protection of indigenous and endemic fish species of the Godavari Basin. The results concluded that the scope of the terrestrial PA network in India could be potentially extended to their bordering aquatic ecosystems, especially rivers to maintain pristine habitat conditions and conserve the fish genetic resources to ensure the flow of ecosystem services.     

Effects of alternate reef states on coral reef fish habitat associations

The present study describes ontogenetic shifts in habitat use for 15 species of coral reef fish at Rangiroa Atoll, French Polynesia. The distribution of fish in different habitats at three ontogenetic stages (new settler, juvenile, and adult) was investigated in coral-dominated and algal-dominated sites at two reefs (fringing reef and inner reef of motu). Three main ontogenetic patterns in habitat use were identified: (1) species that did not change habitats between new settler and juvenile life stages (60% of species) or between juvenile and adult stages (55% of species—no ontogenetic shift); (2) species that changed habitats at different ontogenetic stages (for the transition “new settler to juvenile stage”: 15% of species; for the transition “juvenile to adult stage”: 20% of species); and (3) species that increased the number of habitats they used over ontogeny (for the transition “new settler to juvenile stage”: 25% of species; for the transition “juvenile to adult stage”: 25% of species). Moreover, the majority of studied species (53%) showed a spatial variability in their ontogenetic pattern of habitat use according to alternate reef states (coral reef vs algal reef), suggesting that reef state can influence the dynamics of habitat associations in coral reef fish.     

基于河段尺度的太湖流域城市河流生境评价

快速城市化背景下,太湖流域城市河流水环境与生态功能退化问题日益突出,系统开展城市河流生境评价尤为重要。本研究参考和修正了英国城市河流调查评价体系,基于太湖流域城市河流特点,构建了太湖流域城市河段生境质量指数(SHQI)评价体系,分析太湖流域城市河流生境现状及空间差异。结果表明: 50 个河段的SHQI值介于8～21,3个河段的SHQI值为好,6个为较好,27个为一般,9个为较差,5个为差。太湖流域城市河流生境中植被指数情况较好,物理生境、材质指数情况较差。生境总体状况在空间上表现为镇江>湖州>杭州>嘉兴>苏州>无锡>常州,各城市的物理生境、材质指数与污染指数存在显著差异。干流河段与支流河段的SHQI值无显著差异,但干流河段与支流河段的材质指数和污染指数差异显著。本研究构建的评价体系较好地反映了太湖流域城市河流生境现状,可为城市河流生态修复工作提供参考。     

Using river color to predict Amazonian floodplain forest avifaunas in the world's largest blackwater river basin

Despite the importance of rivers in Amazonian biogeography, avian distribution patterns in river‐created habitats (i.e., floodplain forests) have been sparsely addressed. Here, we explore geographic variation in floodplain forest avifaunas, specifically regarding one of the most striking aspects of the Amazon: the diversity of river “colors” (i.e., types, based on the color of the water). We sampled the avifauna at 30 sites, located in 17 different rivers (nine black‐ and eight whitewater), in the Rio Negro basin, northwestern Brazil. Our sampling comprised ten 15‐min point‐counts per site, distributed every 500–1000 m along the river. We recorded a total of 352 bird species, many of which occurred in both river types. Although bird species richness was similar among rivers, we found significant differences in species composition. Nearly 14 percent of the species were significantly associated with one or the other river type. Most floodplain forest specialists occurred predominantly in whitewater rivers, whereas species that are typically associated with white‐sand habitats occurred in blackwater. Despite significant distinctions between river types, occurrence patterns and levels of habitat association differed among indicator species and may vary in the same species throughout its global distribution. There were also “intermediate” avifauna in some of our sites, suggesting that continuous parameters characterizing river types structure species turnover. The water color‐based classification of Amazonian rivers represents a simple and powerful predictor of the floodplain forest avifauna, offering a stimulating starting point for understanding patterns of floodplain bird distributions and for prioritizing conservation efforts in these overlooked habitats. Abstract in Portuguese is available with online material.     

Patterns of fish species richness in the Seine River basin,France

Variation in fish assemblage structure was examined in different rivers of the Seine Basin. Factor analysis was used to identify similarities among samples and species, and to show ichtyological changes along an upstream-downstream gradient. Fish species richness was correlated with catchment area, distance from the source and number of individuals. Relationships between species richness and number of individuals in a sample were largely an artifact of sampling.Species richness increased with river size, reached a maximum in midsize rivers, then decreased in large rivers. This species richness pattern was consistent with the model of the River Continuum Concept. However, possible causes could include greater pollution effects in large rivers. Distribution of feeding guilds was related to river size. Species richness and proportion of omnivores and piscivores increased with river size, whereas species richness and proportion of invertivores declined downstream. These patterns suggest that trophic diversity of fish assemblages may be related to food availability.     

Seasonal and spatial variations of fish trophic guilds in a shallow,semi-enclosed tropical estuarine bay

A study on seasonal and spatial variations of feeding habits and trophic guilds of dominant fish species in Pattani Bay during March 2003 to February 2004 was aimed at classifying diet composition, identifying dominant food components of each species, categorizing trophic guilds of the community and evaluating effects of habitat characteristics and seasonality on guild organization. Most fishes showed high food intake, fed on a diverse range of food items but relied heavily on calanoid copepods and shrimps. All species, with the exception of Epinephelus coioides, were classified as specialist feeders. Four main dietary guilds were classified. Three of these were classified as the guilds dominated by at least two major food items. Significant variations in trophic guilds of 28 fish species based on habitat types and seasons were also identified. They could be divided into three seasonal groups and three site-groups and a single site. Trophic organization for each season and habitat ranged from two to four groups. This information identifies groups of fishes that seasonally and spatially utilize different food resources within a semi-enclosed estuarine bay ecosystem.     

Linking Flow Regime,Floodplain Lake Connectivity and Fish Catch in a Large River-Floodplain System,the Volga–Akhtuba Floodplain (Russian Federation)

River-floodplain systems are amongst the most productive—but often severely impacted—aquatic systems worldwide. We explored the ecological response of fish to flow regime in a large river-floodplain system by studying the relationships between (1) discharge and inundated floodplain area, with a focus on spatial and temporal patterns in floodplain lake connectivity, and (2) flood volume and fisheries catch. Our results demonstrate a non-linear relationship between discharge and floodplain inundation with considerable hysteresis due to differences in inundation and drainage rate. Inundation extent was mostly determined by flood volume, not peak discharge. We found that the more isolated lakes (that is, lakes with a shorter connection duration to the river) are located at higher local elevation and at larger hydrological distance from the main rivers: geographical distance to the river appears a poor predictor of lake isolation. Although year-to-year fish catches in the floodplain were significantly larger with larger flood volumes in the floodplain, they were not in the main river, suggesting that mechanisms that increase catch, such as increased floodplain access or increased somatic growth, are stimulated by flooding in the floodplain, but not in the river. Fish species that profit from flooding belong to different feeding guilds, suggesting that all trophic levels may benefit from flooding. We found indications that the ecological functioning of floodplains is not limited to its temporary availability as habitat. Refugia can be present within the floodplain itself, which should be considered in the management of large rivers and their floodplain.     

An Ecosystem Model for Exploring Lake Restoration Effects on Fish Communities and Fisheries in Florida

Developing quantitative ecosystem–scale expectations of habitat restoration projects and examining trade‐offs associated with alternative approaches has been a challenge for restoration ecology. Many of the largest freshwater lake restoration projects have occurred in Florida to remediate degradation to vegetated littoral habitats resulting from stabilized water levels, but effects across lake food‐webs have not been assessed. We developed an ecosystem model using Ecopath with Ecosim and Ecospace for a generalized large, eutrophic Florida Lake to explore how simulated restoration activities could influence fish communities with emphasis on sport fish abundance. We modeled three habitat restoration scenarios: (1) “no control,” (2) a “10‐year control” that restored littoral habitat every 10 years, and (3) a “combined control” scenario that restored littoral habitat every 10 years with maintenance controls between 10‐year periods. Our “combined control” scenario provided the largest long‐term habitat restoration benefits for sport fish abundance and the fisheries they support. In Ecospace, we simulated a littoral habitat restoration project that reduced lake‐wide tussock coverage from 30 to 15%. Ecospace predicted positive benefits to sport fish and fisheries following the restoration simulation and highlighted the importance of habitat edge effects, spatial design of habitat restoration projects, and sampling designs for evaluating restoration projects.     

The future distribution of river fish: The complex interplay of climate and land use changes,species dispersal and movement barriers

The future distribution of river fishes will be jointly affected by climate and land use changes forcing species to move in space. However, little is known whether fish species will be able to keep pace with predicted climate and land use‐driven habitat shifts, in particular in fragmented river networks. In this study, we coupled species distribution models (stepwise boosted regression trees) of 17 fish species with species‐specific models of their dispersal (fish dispersal model FIDIMO) in the European River Elbe catchment. We quantified (i) the extent and direction (up‐ vs. downstream) of predicted habitat shifts under coupled “moderate” and “severe” climate and land use change scenarios for 2050, and (ii) the dispersal abilities of fishes to track predicted habitat shifts while explicitly considering movement barriers (e.g., weirs, dams). Our results revealed median net losses of suitable habitats of 24 and 94 river kilometers per species for the moderate and severe future scenarios, respectively. Predicted habitat gains and losses and the direction of habitat shifts were highly variable among species. Habitat gains were negatively related to fish body size, i.e., suitable habitats were projected to expand for smaller‐bodied fishes and to contract for larger‐bodied fishes. Moreover, habitats of lowland fish species were predicted to shift downstream, whereas those of headwater species showed upstream shifts. The dispersal model indicated that suitable habitats are likely to shift faster than species might disperse. In particular, smaller‐bodied fish (<200 mm) seem most vulnerable and least able to track future environmental change as their habitat shifted most and they are typically weaker dispersers. Furthermore, fishes and particularly larger‐bodied species might substantially be restricted by movement barriers to respond to predicted climate and land use changes, while smaller‐bodied species are rather restricted by their specific dispersal ability.