Derivation of the angle of torsion of the eye.

The angle of torsion of the eye, that is the amount by which the eye rotates about its anterio-posterior axis, changes with the direction of the line of fixation. If the eye can be considered as a rigid body under an elaborate system for constraints its motion can be described by the laws of kinematics. The techniques of linear algebra can then be used to derive an explicit relationship between the angles defining the direction of fixation and the angle of torsion of the eye. The angle of torsion can then be expressed as a function of the angle of rotation of the eye and the direction cosines of the axis of rotation. However, under conditions in which Listing's Law holds these angles, are well defined functions of the angles defining the direction of fixation, and so the angle of torsion, in this case, can be expressed as an explicit function of this direction.     

Sexual conflict and the tragedy of the commons

It is widely understood that the costs and benefits of mating can affect the fecundity and survival of individuals. Sexual conflict may have profound consequences for populations as a result of the negative effects it causes males and females to have on one another's fitness. Here we present a model describing the evolution of sexual conflict, in which males inflict a direct cost on female fitness. We show that these costs can drive the entire population to extinction. To males, females are an essential but finite resource over which they have to compete. Population extinction owing to sexual conflict can therefore be seen as an evolutionary tragedy of the commons. Our model shows that a positive feedback between harassment and the operational sex ratio is responsible for the demise of females and, thus, for population extinction. We further show that the evolution of female resistance to counter harassment can prevent a tragedy of the commons. Our findings not only demonstrate that sexual conflict can drive a population to extinction but also highlight how simple mechanisms, such as harassment costs to males and females and the coevolution between harassment and resistance, can help avert a tragedy of the commons caused by sexual conflict.     

Classification of proteins based on the properties of the ligand-binding site: the case of adenine-binding proteins

Comparative analysis of protein binding sites for similar ligands yields information about conserved interactions, relevant for ligand affinity, and variable interactions, which are important for specificity. The pattern of variability can indicate new targets for a pharmacologically validated class of compounds binding to a similar site. A particularly vast group of therapeutically interesting proteins using the same or similar substrates are those that bind adenine-containing ligands. Drug development is focusing on compounds occupying the adenine-binding site and their specificity is an issue of paramount importance. We use a simple scheme to characterize and classify the adenine-binding sites in terms of their intermolecular interactions, and show that this classification does not necessarily correspond to protein classifications based on either sequence or structural similarity. We find that only a limited number of the different hydrogen bond patterns possible for adenine-binding is used, which can be utilized as an effective classification scheme. Closely related protein families usually share similar hydrogen patterns, whereas non-polar interactions are less well conserved. Our classification scheme can be used to select groups of proteins with a similar ligand-binding site, thus facilitating the definition of the properties that can be exploited to design specific inhibitors.     

Resolving the tragedy of the commons: the feedback between intraspecific conflict and population density

Competition and conflict among individuals can favour exploitative strategies that undermine the common good. Theory suggests that this can lead to a tragedy of the commons and ultimately population extinction, a phenomenon known as evolutionary suicide. Here, I present a model of the evolutionary tragedy of the commons that explicitly considers the population dynamics where individuals invest in individually costly competitive traits. In the simplest form, this supports the notion that selection for high levels of conflict can cause evolutionary suicide. However, as competition comes with survival and fecundity costs, a feedback between the investment in competition and population density can act to reduce the level of conflict and prevent the population from going extinct. This suggests that the interaction between population ecology and the evolution of competition and conflict among individuals may be an important mechanism in resolving the level of competition and conflict among individuals.     

On the Population Dynamics of the Malaria Vector

A deterministic differential equation model for the population dynamics of the human malaria vector is derived and studied. Conditions for the existence and stability of a non-zero steady state vector population density are derived. These reveal that a threshold parameter, the vectorial basic reproduction number, exist and the vector can established itself in the community if and only if this parameter exceeds unity. When a non-zero steady state population density exists, it can be stable but it can also be driven to instability via a Hopf Bifurcation to periodic solutions, as a parameter is varied in parameter space. By considering a special case, an asymptotic perturbation analysis is used to derive the amplitude of the oscillating solutions for the full non-linear system. The present modelling exercise and results show that it is possible to study the population dynamics of disease vectors, and hence oscillatory behaviour as it is often observed in most indirectly transmitted infectious diseases of humans, without recourse to external seasonal forcing.     

On the charge regulation of proteins

It is known that the overall charge of a protein can change as the molecule approaches a charged object like another protein or a cell membrane. We have formalized this mechanism using a statistical mechanical framework and show how this rather overlooked interaction increases the attraction between protein molecules. From the theory, we can identify a unique property, the protein charge capacitance, that contains all information needed to describe the charge regulation mechanism. The capacitance can be obtained from experiment or theory and is a function of pH, salt concentration, and the number of titrating residues. For a range of different protein molecules, we calculate the capacitance and demonstrate how it can be used to quantify the charge regulation interaction. With minimal effort, the derived formulas can be used to improve existing models by including a charge regulation term. Good agreement is found between theory, simulations, and experimental data.     

Modulating repeat protein stability: the effect of individual helix stability on the collective behavior of the ensemble

Repeat proteins are tandem arrays of a small structural motif, in which tertiary structure is stabilized by interactions within a repeat and between neighboring repeats. Several studies have shown that this modular structure is manifest in modular thermodynamic properties. Specifically, the global stability of a repeat protein can be described by simple linear models, considering only two parameters: the stability of the individual repeated units (H) and the coupling interaction between the units (J). If the repeat units are identical, single values of H and J, together with the number of repeated units, is sufficient to completely describe the thermodynamic behavior of any protein within a series. In this work, we demonstrate how the global stability of a repeat protein can be changed, in a predictable fashion, by modifying only the H parameter. Taking a previously characterized series of consensus tetratricopeptide repeats (TPR) (CTPRa) proteins, we introduced mutations into the basic repeating unit, such that the stability of the individual repeat unit was increased, but its interaction with neighboring units was unchanged. In other words, we increased H but kept J constant. We demonstrated that the denaturation curves for a series of such repeat proteins can be fit and additional curves can be predicted by the one-dimensional Ising model in which only H has changed from the original fit for the CTPRa series. Our results show that we can significantly increase the stability of a repeat protein by rationally increasing the stability of the units (H), whereas the interaction between repeats (J) remains unchanged.     

Ionic conditions for the cleavage of the tRNA-like structure of turnip yellow mosaic virus by the catalytic RNA of RNase P

The 3'-end of the RNA genome of turnip yellow mosaic virus can form a pseudoknotted tRNA-like structure that can be recognized by several tRNA-specific enzymes. We have found that the catalytic RNA component of Bacillus subtilis RNase P can cleave this structure in unusually low ionic strength buffers at a site analogous to the 5'-end of an aminoacyl stem of a tRNA. Most other precursors can only be processed under low ionic strength conditions if the RNase P holoenzyme is used; processing by the catalytic RNA component alone requires a higher ionic strength buffer. The cleavage of the turnip yellow mosaic virus tRNA-like structure demonstrates the importance of the substrate in determining the optimal buffer conditions for this reaction and also shows that high ionic strength buffers are not always necessary for cleavage by the catalytic RNA.     

Age determination on the sternal articular faces of the clavicula

Using a sample of 140 clavicles, the surface form of the Facies articularis sternalis was examined for its usefulness in age estimation. It could be shown that between the 18th and 30th year of age the sternal articular face of the clavicle undergoes a change in form which can be applied to age determination. Three characteristic phases can be identified which can be used for estimating the age.     

芽孢杆菌与杀菌剂复配防治植物病害的研究进展

芽孢杆菌属包含多种植物病原物的拮抗菌,可广泛用于植物病害防治.然而单独利用生防菌进行生物防治常由于环境因素影响而无法达到较好的防治效果,可通过与低剂量杀菌剂复配使用来提高防治效率.本文对生防芽孢杆菌与杀菌剂复配使用进行植物病害综合防治的研究现状、防效、研究方法等进行综述,芽孢杆菌与杀菌剂复配使用不仅保障了防治效果,还大...     

On an equation modeling the flow in the canal of Schlemm

In a recent paper Tandon and Autar showed how the model equations for flow of aqueous humor in the canal of Schlemm with a flexible inner wall can be reduced to a second-order boundary value problem for the fluid pressure. They then proceeded to solve this using an approximate iterative scheme. In this paper we show how the problem can be reduced to a first-order one for the canal thickness that can be analyzed in the phase plane. This crucial reduction and subsequent analysis reveals important properties of the solution not apparent from the approximate treatment of Tandon and Autar. Furthermore, by solving the first-order problem exactly in terms of definite integrals, the important questions of existence and uniqueness for given parameter values can be addressed.     

Variations in the arrangement of tonofilaments in the epidermis of teleost fish

Tonofilaments in epithelial cells of teleost skin can be aligned as bundles or skeins of appreciable bilk, or form a pattern of smaller bundles oriented in various directions, or there may be a condition where individual tonofilaments interlace. If sufficiently close together, interwoven tonofilaments can form a basket-like structure, a “capsule”, proximally in the cell. This arrangement, previously known in epithelial cells of Myxinoids, occurs in localised sites in various teleosts of diverse taxonomic position, for instance in clupeids and gadids. A less intimate interlacing of cortical tonofilaments can accompany a modification of the perinuclear cytoplasm previously described, by light microscopy, as “vesiculated”, as in the middle layers of the epidermis in Periophthalmus. In head epidermis of Sprattus, the outer layers of cells contain proximal capsules, but the middle layers consist of flattened cells with a restricted perinuclear cytoplasm, peripheral tonofilaments, and a second population of filaments of a larger calibre. One implication of these results is that the cytoskeleton can undergo profound modification as cells progress from the basal to the superficial layers of the epidermis.     

An in vitro method for recording the electrical activity of the isolated heart of the adult Drosophila melanogaster

A recording chamber for monitoring the electrophysiological properties of the isolated heart of adult Drosophila melanogaster has been developed. Spontaneously generated field potentials of constant amplitude can be recorded for 6-8 h (n = 14); in very few cases, records were maintained stable for over 10 h (n = 4), and in some cases below 6 h (n = 5). The chamber consists of the tip of a micropipette, which allows for monitoring the field potential generated by the spontaneously contracting heart. The method can produce accurate information about the heart rate and the amplitude of the cardiac action potential. The preparation can be used for pharmacological studies on the heart of D. melanogaster since it responds, with an increase in the heart rate, to unusually low concentrations of octopamine, 1 nM, a compound with cardioaccelerating properties for insect heart. The recording system can be easily modified for experiments on the heart of other insects. Finally, the isolated heart of D. melanogaster provides a simple method for identifying mutations that affect heart physiology.     

From the conception of the PRINS to its coronation

As a non-isotopic molecular cytogenetic technique, the primed in situ (PRINS) labelling reaction represents a major technological progress achieved in the past decade. It has become a routine technique for the microscopic visualization of specific DNA sequences in cells and nuclei and constitutes a good alternative to the fluorescence in situ hybridization (FISH) procedure. Among the multiple advantages that characterize the PRINS technique, specificity, rapidity, reliability, reproducibility, and cost-effectiveness can be mentioned. PRINS can be in addition associated with other techniques like FISH, indirect immunofluorescence, and nick translation. The most recent developments show the great potential of this technique. Now PRINS can be used to study single-copy genes and, consequently, can be routinely used to investigate deletions associated with microdeletion syndromes. Therefore, the PRINS technique has the potential to become a widely used molecular cytogenetic tool in clinics and research. This short review presents how the PRINS technique contributed to further the understanding of biological phenomena and describes the different possibilities and applications of the PRINS method in several biological and clinical fields (pre-implantation testing, prenatal, constitutional and oncologic genetic diagnosis).     

Computer models of the electrophysiological properties of the heart]

Computer models of the heart can improve the understanding of the electrophysiological processes in healthy and diseased heart. They become more and more important for detailed diagnosis of arrhythmias and for optimization of therapy. Models of myocardium cells known today are described--they are based on the properties of all relevant ion channels in the cell membrane. Then it is demonstrated, how many cells can be joined to form a cell patch and how finally the complete heart can be modelled. A simpler approach is using a so called cellular automation that allows for a significant reduction of calculation time while sacrificing some accordance to reality. Adaptive cellular automations allow for a fast simulation with acceptable accuracy. Using them some results were gained for the simulation of typical arrhythmias, in the field of validation using an animal model and for therapy planning with RF-ablation.     

Folding at the rhythm of the rare codon beat

The persistent difficulties in the production of protein at high levels in heterologous systems, as well as the inability to understand pathologies associated with protein aggregation, highlight our limited knowledge on the mechanisms of protein folding in vivo. Attempts to improve yield and quality of recombinant proteins are diverse, frequently involving optimization of the cell growth temperature, the use of synonymous codons and/or the co-expression of tRNAs, chaperones and folding catalysts among others. Although protein secondary structure can be determined largely by the amino acid sequence, protein folding within the cell is affected by a range of factors beyond amino acid sequence. The folding pathway of a nascent polypeptide can be affected by transient interactions with other proteins and ligands, the ribosome, translocation through a pore membrane, redox conditions, among others. The translation rate as well as the translation machinery itself can dramatically affect protein folding, and thus the structure and function of the protein product. This review addresses current efforts to better understand how the use of synonymous codons in the mRNA and the availability of tRNAs can modulate translation kinetics, affecting the folding, the structure and the biological activity of proteins.     

A review of the thermal sensitivity of the mechanics of vertebrate skeletal muscle

Environmental temperature varies spatially and temporally, affecting many aspects of an organism’s biology. In ectotherms, variation in environmental temperature can cause parallel changes in skeletal muscle temperature, potentially leading to significant alterations in muscle performance. Endotherms can also undergo meaningful changes in skeletal muscle temperature that can affect muscle performance. Alterations in skeletal muscle temperature can affect contractile performance in both endotherms and ectotherms, changing the rates of force generation and relaxation, shortening velocity, and consequently mechanical power. Such alterations in the mechanical performance of skeletal muscle can in turn affect locomotory performance and behaviour. For instance, as temperature increases, a consequent improvement in limb muscle performance causes some lizard species to be more likely to flee from a potential predator. However, at lower temperatures, they are much more likely to stand their ground, show threatening displays and even bite. There is no consistent pattern in reported effects of temperature on skeletal muscle fatigue resistance. This review focuses on the effects of temperature variation on skeletal muscle performance in vertebrates, and investigates the thermal sensitivity of different mechanical measures of skeletal muscle performance. The plasticity of thermal sensitivity in skeletal muscle performance has been reviewed to investigate the extent to which individuals can acclimate to chronic changes in their thermal environment. The effects of thermal sensitivity of muscle performance are placed in a wider context by relating thermal sensitivity of skeletal muscle performance to aspects of vertebrate species distribution.     

Studies on the use of plant extracts in assessing the effects of plant metabolism on the mutagenicity and toxicity of pesticides

We have carried out studies on the effects of plant metabolism on the mutagenicity of agricultural chemicals. Our approach is to use a cell-free plant extract, as a source of metabolic enzymes, in a standard Ames test. Using a number of test compounds, we observe that plant metabolism can alter the mutagenicity of several pesticides, and can in some instances give rise to metabolites apparently unique from those which are formed in animal cells. A number of parameters of the assay have been examined, and we find that the assay temperature and preincubation of the pesticide with the extract can significantly alter the outcome of the test. We also have devised a method of controlling for the effects that natural extracts can have on the spontaneous reversion rate of the Salmonella tester strains, in an effort to distinguish slight mutagenic responses from the effects of nutrients (e.g. histidine for his- bacteria) in the assay.