(1) The natural ATPase inhibitor (IF
1) from beef heart mitochondria has a tendency to form aggregates in aqueous solutions. The extent of aggregation and the structure of the aggregates were assessed by gel filtration and small-angle neutron scattering. IF
1 polymerization was found to depend on the salt concentrations, pH of the medium and concentration of IF
1. The higher the salt concentration, the lower the aggregation state. Aggregation of IF
1 was decreased at slightly acidic pH. It increased with the concentration of IF
1 as expected from the law of mass action. (2) Neutron scattering showed the aggregation of IF
1 in 2 M ammonium sulfate solutions. The predominant species is the dimer which has a somewhat elongated shape. (3) The Sephadex G-50 chromatography that is supposed to deprive beef heart submitochondrial particles of loosely bound IF
1 (Racker, E. and Horstman, L.L. (1967) J. Biol. Chem. 242, 2547–2551) was shown to have a limited effectiveness as a trap for IF
1. The reason was that IF
1 released from the particles formed high molecular weight aggregates that were not separated from the membrane vesicles by Sephadex G-50 chromatography. (4) The above observations provide the basis for a simple method of purification of beef heart IF
1 which combines the recovery of the supernatant from submitochondrial particles with the last three steps of the IF
1 preparation described by Horstman and Racker (J. Biol. Chem. (1970) 265, 1336–1344). The particles recovered in the sediment were deprived of IF
1 and could therefore be used for preparation of F
1-ATPase. The advantage of this method is that both IF
1 and F
1-ATPase can be prepared from the same batch of mitochondria.
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