Differential rates of evolution for the ZFY-related zinc finger genes,Zfy, Zfx,and Zfa in the mouse genus Mus

A comparative study of the last exon of the zinc finger genes Zfx, Zfy, and Zfa from species of mice in the genus Mus was conducted to assess the extent of gene-specific and chromosome-specific effects on the evolutionary patterns among related X-, Y-, and autosomal-linked genes. Phylogenetic analyses of 29 sequences from Zfx, Zfa, and Zfy from 10 taxa were performed to infer relatedness among the zinc finger loci, and codon-based maximum likelihood analyses were conducted to assess evolutionary pattern among genes. Five models of nucleotide sequence evolution were applied and compared using a likelihood ratio test. Estimates of nonsynonymous to synonymous changes (dN/dS) for these genes suggest that amino acid substitutions are occurring at a more rapid rate across the autosomal- and Y-specific lineages compared to the X-specific lineage, with the Y-specific lineage showing the highest rate under certain models. The data suggest the action of gene-specific effects on evolutionary pattern. In particular, Zfa and Zfy genes, both with presumed restricted expression, appear less functionally constrained relative to ubiquitously expressed Zfx. Slightly elevated dN/dS for Zfy genes in comparison to Zfa also suggest Y-specific effects.     

Morphometric stepwise discriminant analysis of the five genetically determined European taxa of the genus Mus

Univariate and multivariate analyses have been performed on skull and mandible measurements for the five biochemically defined groups of the genus Mus in Europe. Four of these taxa occur in Bulgaria; other samples came from France and Israel. This extensive biometrical analysis has allowed us to establish diagnostic keys for these taxa.     

Geographic differentiation between populations of Rhinocyllus conicus Frölich (Coleoptera: Curculionidae): concordance of allozyme and morphometric analysis

The weevil Rhinocyllu conicus develops only in the flowerheads of thistles {Asteracea; Carduineae) and therefore it is used as a biocontrol agent against thistle weed species. Populations out of 14 regions within its natural distribution area (from the Atlantic coast in the west to Israel in the east) were analysed by means of allozymes and morphometries. In both analyses the 14 populations were grouped into two concordant units. Based on nine scored loci (six of them polymorphic), mean Nei's genetic distance between the two groups was 0.073. In a reclassification test following DFA of morphometric data, 93.2% of all individuals were grouped back into the correct group. The two groups were considered to belong to a temperate and a Mediterranean subspecies respectively, the latter probably identical to the formerly described Rhinocyllus oblongus .     

Phylogenetic systematics of the genus Echinococcus (Cestoda: Taeniidae)

Echinococcosis is a serious helminthic zoonosis in humans, livestock and wildlife. The pathogenic organisms are members of the genus Echinococcus (Cestoda: Taeniidae). Life cycles of Echinococcus spp. are consistently dependent on predator–prey association between two obligate mammalian hosts. Carnivores (canids and felids) serve as definitive hosts for adult tapeworms and their herbivore prey (ungulates, rodents and lagomorphs) as intermediate hosts for metacestode larvae. Humans are involved as an accidental host for metacestode infections. The metacestodes develop in various internal organs, particularly in liver and lungs. Each metacestode of Echinococcus spp. has an organotropism and a characteristic form known as an unilocular (cystic), alveolar or polycystic hydatid. Recent molecular phylogenetic studies have demonstrated that the type species, Echinococcus granulosus, causing cystic echinococcosis is a cryptic species complex. Therefore, the orthodox taxonomy of Echinococcus established from morphological criteria has been revised from the standpoint of phylogenetic systematics. Nine valid species including newly resurrected taxa are recognised as a result of the revision. This review summarises the recent advances in the phylogenetic systematics of Echinococcus, together with the historical backgrounds and molecular epidemiological aspects of each species. A new phylogenetic tree inferred from the mitochondrial genomes of all valid Echinococcus spp. is also presented. The taxonomic nomenclature for Echinococcus oligarthrus is shown to be incorrect and this name should be replaced with Echinococcus oligarthra.     

Quantitative trait and allozyme divergence in the Greenfinch (Carduelis chloris, Aves: Fringillidae)

Quantitative trait divergence and variability among 12 greenfinch populations across continental Europe was examined and compared to divergence in neutral genetic markers (allozymes). The added among locality variance component for 16 skeletal traits was large (mean 28%, range 4–48%) equalling a divergence of up to three SD units. The divergence in quantitative traits (Qst = 0.04-0.48) greatly exceeded that in alloymes (F_ST= 0.01-0.07), indicating the differentiation in quantitative traits to be larger than expected by mutation and drift alone. This conclusion was consistent also with results from the multivariate approach of Rogers & Harpending. However, genetic and morphometric distances between populations were positively correlated, even when controlling for the geographic distance separating pairs of populations. In concordance with Bergmann's rule, most traits were strongly and positively correlated with latitude, indicating latitudinally ordered genetic or/and environmental effects. However, the correlation between lower mandible width and latitude was strongly negative, demonstrating an inverse relationship between beak size and body size across the populations. These results are interpreted to reflect the re-colonization of history of northern Europe (genetic and geographic distances correlated) which has been paralleled by selection acting on quantitative traits (Q_ST>F_ST)- In particular, the counter-gradient variation in beak width, a functionally important trait, is suggestive of an adaptive basis for quantitative trait divergence.     

Interspecific allozyme variation among Morchella spp. and its inferences for systematics within the genus

The genetic variability of 12 enzymes encoded by 12 loci (Fum, Gapdh, Gpi, Idh, Lap, Mpi, Me, Pgk, Pgd, PepGI, Sod and Tpi) was examined by horizontal starch gel electrophoresis and standard histochemical staining in 19 lines of Morchella spp. The lines could be separated into eight genotypic classes based on their multilocus allelic combinations. Several isolates originally recorded as one species based on morphology were classified as another based on electrophoretic banding patterns. This lack of concordance between allozymic and morphological data sets may help to explain the taxonomic difficulties within the genus. In general, two groupings of the six morphologically identified species could be recognized (M. angusticeps, M. conica and M. elata vs M. esculenta, M. crassipes and M. deliciosa).     

Genetic variation and phylogeography of free-living mouse species (genus Mus) in the Balkans and the Middle East

This work presents a study of the distribution and pattern of variation throughout the ranges of three free-living mouse species of the genus Mus-M. macedonicus, M. spicilegus, and a M. cypriacus - based on sequencing of two segments of the mitochondrial DNA (mtDNA) control region. The study shows a similar level of variability in the three species and suggests their recent population expansion. The highest proportion of variation is found within populations indicating low genetic structuring. Phylogenetic analysis confirms the significant divergence of a mitochondrial lineage of M. macedonicus from Israel, recently described as a new subspecies, M. macedonicus spretoides. Conversely, no genetic hiatus is revealed between European and Asian populations of M. macedonicus macedonicus. Although phylogenetic relationships among M. spicilegus populations could not be unravelled precisely, the results suggest a recent westward expansion of the species. The mtDNA divergence between M. macedonicus and M. spicilegus is 7.3%, suggesting their split between c. 700,000 and 1 million years ago. These dates correspond with a coalescent estimate about 720,000 years ago. On the other hand, M. cypriacus appeared almost twice as divergent from the former species (4.5%) as from the latter (8.8%) suggesting a divergence of c. 430,000-610,000 years ago (coalescent approximately 490,000 years ago) and 830,000-1.2 million years ago (coalescent approximately 780,000 years ago), respectively. Approximate times of population expansion have also been estimated for all taxa and groups of populations. Existence of several glacial refuges and various colonization scenarios are discussed; since all estimated divergence times fall within interglacial periods it seems that climatic oscillations did not play a crucial role in the evolution of the three species.     

Allozymic Polymorphism Among 14 Populations of the House Mouse, Mus musculus domesticus, From Greece

Nineteen loci from 239 individuals of the house mouse Mus musculus domesticus (Rodentia, Muridae) were analyzed by means of thin layer electrophoresis. The mice were collected from 14 localities of Greece mainly confined to the area of NW Peloponnese, where a Robertsonian (Rb) system is observed. The individuals were chromosomally characterized by nine diploid numbers, the 2n = 24, 26, 27, 28, 29, 30, 31, 32, and 40. The statistic elaboration revealed that all 14 populations studied were not characterized by cohesive demic structure and high inbreed levels while the gene flow among them has resulted in low levels of genetic differentiation. The resulting values for Neis genetic distance corresponded to distances known for the level of geographical populations of, M. musculus. Wagners cladogram for the phylogenetic relations between the populations studied implied that it is the diploid number, rather than the geographical factor, that characterizes or dominates each population, which mainly influences the phylogenetic relationships.     

Associations of allozyme variation and behavior in the cowpea weevil (Callosobruchus maculatus)

The cowpea weevil (Callosobruchus maculatus (Fabré)) exhibits several behavioral traits that are stable within, but vary among, strains. These traits are heritable and quantitative. We used cellulose acetate gel electrophoresis to quantify allozyme variation within and among laboratory cultures of four weevil strains and determine whether allozyme variation correlates with behavioral traits. Significant variation exists at 8 of 11 loci assayed and gene frequencies are significantly different among strains. The South Indian strain (SI) is most variable and measures of genetic distance set it apart from the other strains. It is also behaviorally unique. The Brazilian strain (BC) is most different from SI in allozyme diversity and behavioral phenotype, while two African strains (IITA, CAM) are intermediate in allozyme diversity and phenotype. These results are consistent with the known history of these strains and the differences in the allozymes parallel the differences in behavioral traits.     

Morphological, cytogenetic and allozymic variation within Cephalofovea (Onychophora: Peripatopsidae) with descriptions of three new species

Variation within and between populations of Cephalofovea (Peripatopsidae) has been examined by allozyme, karyological and morphological analyses. Four groups are recognized on the basis of allozyme electrophoresis. One group includes specimens from the type locality of the only described species of the genus, C. tomahmontis. While karyotypic and morphological character states show considerable inter-group variation, the distributions of these states among groups are not concordant when different characters are compared. However, each group of populations is uniquely defined by the full suite of character states it possesses. The four groups are recognized here as distinct species with three species described as new.     

Allozyme variation of African and Iberian populations of the genus Cobitis

African and Iberian populations of the genus Cobitis exhibit high morphological polymorphism and their taxonomy is unclear. In seven such populations the percentage of polymorphic loci ranged between _ P =0.08–0.48 and mean heterozygosity per locus H =0.005–0.073. The lowest Nei genetic distance between African and Iberian populations of Cobitis was D =0.250. The populations separated with the formation of the Gibraltar strait 5 million years ago. C. calderoni is a well-differentiated branch from the rest of the Iberian populations of the genus. Our analysis supports the concept that C. paludica populations and C. maroccana are referable to the subgenus Iberocobitis . These African and Iberian populations represent two taxa, C. maroccana Pellegrin, 1929 and C. paludica De Buen, 1930. C. maroccana and C. paludica populations are monophyletic and the African population is the most differentiated genetically. The Arrago population of C. paludica is genetically the most differentiated of the Iberian populations. Our allozyme data do not support the previous consideration of the Albufera lagoon population as a different species from C. paludica .     

Genetic variation in the genus Leiopelma and relationships to other primitive frogs

Allozyme variation was studied the three living species of Leiopelma. L. hamiltoni and L. archeyi are shown to be closely related to each other although L. hamiltoni is slightly more divergent relative to L. hochstetteri. This parallels previous cytoenetic data. The rarity and insularity of L. hamiltoni enables the calculation of a mutation rate based on genetic variance and population size. A mutation rate per generation of 2.7times 10^--⁶ is sufficient to account for the observed levels of variation. Six populations of L. hochstetteri show a pattern of genetic divergence that also closely parallels previously detected cytogenetic variation. L. hochstetteri is genetically distant from its congeneric species while all species of Leiopelma are at an extreme genetic distance from Ascaphus truei, the only other living amphicoelous fro At the limits of resolution of the allozme technique, Ascaphus clusters with the more morphologically advanced frogs, Discogiossus and Bombina, rather than with Leiopelma. Taken with other evidence, this supports recognition of two families, Leiopelmatidae anl Ascaphidae, with Leiopelma the probable sister group of all other frogs.     

The use of chromosomal data in the systematics of viviparous onychophorans from Australia (Onychophora: Peripatopsidae)

A chromosomal analysis of populations of viviparous Australian onychophorans has uncovered a large radiation in karyotypic form. Chromosome numbers of 18, 26, 30, 32, 33 and 34 were observed, and these classes could be further subdivided on the basis of internal size relationships. Given the practical difficulties with the systematics of this group, the use of chromosomal data promises to be particularly enlightening. This is the first time any karyotypic data have been published for onychophorans since a single species was analysed in 1900.     

High levels of genetic variation in Indian field and house mice

Genetic variation in the Indian pygmy field miceMus booduga and theMus terricolor complex and in the house mouseMus musculus tytleri was analysed electro phoretically at 20 enzymatic and nonenzymatic protein loci. The results show an unusually high genetic variation in the field mice in terms of per cent polymorphism (P = 75 to 90 at 0-95 level), observed heterozygosity (Ho = 0.215[ ± 0.213] to 0.314 [±0.236]) and average number of alleles(A = 2.0[± 0.858] to 2.38 [±0.868]). Very high values of P,Ho andA were also observed for the house mouse. Genetic distance (D) determined by using Nei’s (1978) formula in theM. terricolor complex ranged from the lowest,D = 0.082, betweenM. terricolor I and II to the highest,D = 0.155, betweenM. terricolor II and III. Genetic distance betweenM. booduga and theM. terricolor complex was 0-259 and that between the house mouseM. m. tytleri and theM. booduga-terricolor lineage was 0.285. TheseD values corroborate that the pygmy field and house mice are closely allied.     

A geometric morphometric analysis of the shape of the first upper molar in mice of the genus Mus (Muridae, Rodentia)

Phenotypic variation in the shape of the first upper molar among 595 mice, representing nine extant and three extinct taxa of the genus Mus , was studied with thin-plate spline analysis. The reliability of classification of individual specimens into known groups based on their molars varied from 75 to 100%, depending on group and method used. Including 13 sliding semilandmarks to the analysis improved the detection of different kinds of size and shape variation as well as visualization of shape differences between studied groups. Correlation between phylogenetic and morphometric distances suggested about 80% contribution of phylogenetic inertia to the molar shape variation; moreover, the importance of localized versus global shape changes was similar in the detection of phylogenetic signals. Finally, shape changes along individual evolutionary lineages were revealed, suggesting a few cases of reversals, convergence and/or retention of ancestral shape. The evolution of mouse molars has thus been driven by random effects of drift together with stabilizing selection and convergence.