New approaches in hominoid taxonomy: morphometrics

We report here on new cranial data relevant to hominoid taxonomic analyses, based on a study of 438 skulls belonging to 13 nonhuman living hominoid taxa. Nineteen landmarks were selected to describe the overall shape of the maxillofacial complex, in order to investigate its discriminative power in taxonomic analyses. We used a geometric morphometrics approach to depict morphological variation from the genus down to the subspecific level, and we evaluated whether our morphologic criteria are relevant to discriminating species and subspecies among living hominoids. Considering previous genetic studies, we discuss whether our results can be extrapolated to the hominin fossil record, providing a reference for species and subspecies morphologic differentiation. Our results indicate that the relative warp method, as applied to facial landmarks, provides a powerful tool to discriminate taxa down to a subspecific level. Results show a noticeable divergence of P. t. verus compared to P. t. troglodytes and P. t. schweinfurthii. According to our data, the distance between eastern and western gorilla populations as well as between Bornean and Sumatran orangutan subspecies is as great as between the two species of Pan. In the same manner, differences between Hylobates and Symphalangus are similar to those between Pan and Gorilla genera. Congruence between the morphological distances computed in this study and previous morphological and genetical studies strongly supports their relevance for morphological species recognition in paleoanthropology. Our data provide an objective standard for assessing taxonomic differences among hominoids, and will enable us to define more precisely the significance of morphological differences in the fossil record.     

Historical vs. ecological factors influencing global patterns of scarabaeine dung beetle diversity

Abstract. There has been much debate concerning the relative influence on biodiversity of historical vs. current ecological factors. Although both are important, we suggest that historical influences might be greater at higher taxonomic level, since one is looking further back into evolutionary history than at lower taxonomic level. Although we are unable to separate ecological from historical effects in the present global study on scarabaeine dung beetles, we are able to demonstrate differences in correlations between major environmental influences (climatic area, numbers of dung types) and major components of diversity (taxon richness, taxon diversity, functional composition) at different taxonomic levels (tribe, genus, species). Current global variation in taxon richness is correlated strongly to current biogeographical variation in the area of suitable climate at all three taxonomic levels. However, generic and species richness is correlated most strongly to climatic combinations which include tropical and warm summer rainfall climate types (I, II). In contrast, tribal richness is correlated most strongly to climatic combinations which include both warm summer rainfall and temperate climate types (II, VI, X). Regional variation in the number of available dung types shows a strong positive correlation to regional variation in taxon richness at higher tribal level but not at lower generic and species levels. Similarly, biogeographical differences in the number of available dung types show a strong negative correlation to dominance indices for taxon diversity at tribal level (distribution of generic numbers between tribes) but none at generic level (species numbers per genus). As functional diversification is linked closely to taxonomic diversification at tribal level, proportions of both ball‐rolling genera and ball‐rolling species also show strong negative correlations to the number of dung types available in each region. In conclusion, the presence of dung type correlations only at higher taxonomic level may reflect historical effects on scarabaeine taxon diversification, whereas differences in correlations to climate type with taxonomic level may reflect both current ecological and historical effects.     

On the effectiveness of higher taxonomic ranks for vegetation analysis

The ecological value of employing taxonomic categories other than species to describe vegetation is examined by comparing the results of numerical classification. Using presence data only and an unsophisticated classification method with data from a small area, it is found that the use of generic and subgeneric categories instead of species causes little loss in interpretability. At the family and subfamily levels more sophisticated analyses probably employing quantitative data, are apparently required to achieve similar levels of interpretability. The transformation between categories is shown to be a simple matrix multiplication and some alternative transformations are briefly outlined. It is suggested that the use of different taxonomic categories in a sequence of analyses beginning with the highest category would provide a useful means of planning which could reduce the overall time required for the analysis of large data sets.     

Morphometric variation and the classification of Penniseturn section B revivalvula (Gramineae) in tropical Africa

Morphological data for 15 reproductive characters were compiled for 177 African collections of Penniseturn section Brevivalvula (Gramineae). Principal component analyses of the resulting data set revealed the presence of three phenetically distinct groups which are here treated as species. Although extensive morphological variation exists within two of these species, this variation is essentially continuous and is recognized here at the subspecific level.     

A study of the systematics of cyprinid fishes by two-dimensional gel electrophoresis

This study was carried out to shed light on confused subfamilial groupings in the Cyprinidae from the biochemical viewpoint at the molecular level, specifically by using two-dimensional gel electrophoresis of liver proteins. Six pairs of cypriniform fishes, which are different from one another at familial, subfamilial, generic, specific, subspecific, and individual levels, were compared. The genetic distances between pairs of fishes increased as taxonomic ranks of the pairs became higher, confirming the reliable usefulness of this technique. Four species representing the different subfamilies, Cyprininae, Gobioninae, Acheilognathinae, and Leuciscinae, were compared to give new insight into relationships at the subfamilial level. Cyprinus carpio (Cyprininae) and Pseudogobio esocinus esocinus (Gobioninae) gave the smallest genetic distance and the largest values were obtained between either one of the above species and Acheilognathus melanogaster (Acheilognathinae), suggesting that the former two subfamilies compose the most closely related group that is in turn distantly related to Acheilognathinae. Tribolodon hakonensis (Leuciscinae) had almost equal genetic distances to the three other species.     

Phylogeography and species boundaries of the western North American Nightsnake (Hypsiglena torquata): revisiting the subspecies concept

The subspecies concept has received considerable debate throughout the past century. Subspecies were originally used to delineate potential incipient species, but were later employed to simply capture geographical variation. There is a recent trend to eliminate the trinomial in light of new evidence. Discrete, diagnosable lineages are elevated to specific status, while those that show clinal variation and/or appear to represent ecological pattern classes are placed in synonymy with the parent species and the subspecific epithets are disregarded. Here, I examine the species boundaries of nightsnakes (Hypsiglena torquata) using standard phylogeographic methods and mtDNA data from 178 individuals. Previously, seventeen subspecies of H. torquata were described. In this study, I recognize six species in what was previously considered H. torquata: one is novel, two were previously recognized subspecies, while the remaining three are wide-spread, polymorphic lineages, composed of multiple subspecies. I make the case to maintain the subspecific lineages in these wide-ranging species because they are geographically cohesive, morphologically discrete, and may represent incipient species within each complex, which have not yet achieved speciation. These subspecies are maintained, not only pending future investigations, but because they provide a useful identity for the taxonomy of this diverse lineage.     

Isoenzymatic characterization of potentially useful forage shrubs belonging to the genus Cytisus and allies (Genistea: Leguminosae)

Twenty-five accessions belonging to the genus Cytisus and allies (Genisteae: Leguminosae), potentially useful for agrosylvopastoral systems in the Mediterranean basin, were analyzed using isoenzymes. The aim was to assess the taxonomic usefulness of these characters at the specific and generic levels, and its value as an aid for the taxonomy. A high level of infrageneric and infraspecific variability was detected. Numerical analysis showed that isoenzymes are useful for the characterization both at the specific and generic levels. The obtained dendrogram supports the generic arrangement proposed by Bisby [(1981) Advances in Legume Systematics, Vol. 1, pp. 409–425], therefore helping to elucidate the difficult taxonomy of the studied species.     

Phylogenetic history of sifakas (Propithecus: lemuriformes) derived from mtDNA sequences

The sifakas (Propithecus) include three species containing up to 10 described subspecies, whose evolutionary relationships remain contentious. In particular, it is unclear whether P. verreauxi deckeni and P.v. coronatus populations are differentiated at the subspecific level. Furthermore, the taxonomic status of the recently discovered P. tattersalli and its phylogenetic position also require further examination. About 2,400 bp of mitochondrial DNA sequence data from part of the COIII gene, together with complete genes for ND3, ND4L, ND4, and five tRNAs, were used to clarify relationships among Propithecus species and subspecies. All analyses group Avahi as the sister group to all sifakas. P. diadema is placed as a sister group to all other Propithecus. Among the remaining sifakas, one subclade is formed by Puv. coquereli and P. tattersalli, while P.v. verreauxi, P.v. deckeni, and P.v. coronatus form the second subclade. All analyses fail to resolve P.vu. coronatus and P.v. deckeni into separate monophyletic lineages. Based on pairwise distance comparisons and tree topology, we conclude that P. tattersalli does not represent a distinct species and that P.v. deckeni and P.v. coronatus do not deserve subspecific rank. On the other hand, our analyses indicate that P.v. coquereli may well represent a separate species.     

A taxonomic revision of the genera Phrygionis Hübner and Pityeja Walker (Geometridae: Ennominae, Palyadini)

Phrygionis and Pityeja belong to the Palyadini, a tribe of neotropical Ennominae. The moths of both genera bear striking wing markings and mere variants were frequently described as species with the consequence that species diversity was overestimated. Numerous taxonomic changes are made in this work based on the study of primary types and much other material. Variation and distribution is recorded for each species and subspecies. Phylogenetic relationships within Phrygionis are examined, and comments are made on the evolution of wing pattern within this genus.
Fifteen full species are recognized in this study (13 in Phrygionis and two in Pityeja ), of which four (all in Phrygionis ) are described as new; 19 species-group (specific and subspecific) names refer to valid taxa. Twenty-four species-group names are synonymized (19 in Phrygionis and five in Pityeja ) and five are recombined with different genera (four with Phrygionis and one with Pityeja ). Three generic names are synonymized (one in Phrygionis and two in Pityeja ).     

M-AMBI derived from taxonomic levels higher than species allows Ecological Status assessments of benthic habitats in new geographical areas

Under the Water Framework Directive (WFD) benthic Ecological Quality Ratios (EQRs) are important tools for assessing Ecological Status (ES) of coastal and transitional waters. Calculation of the Multivariate-AZTI Marine Biotic Index (M-AMBI) EQR is based on the proportions of sensitive and stress tolerant benthic invertebrate species, number of species and Shannon–Wiener diversity. The sensitivity of many tropical/sub-tropical taxa has not yet been determined, presenting a barrier to the direct transfer of WFD EQRs, and the ideas underpinning them, to the management of coastal waters beyond Europe. To overcome this we examine using higher taxonomic level data with M-AMBI.Before applying such approaches to assessing ES in new geographical regions it is essential to determine the effects of using higher taxonomic level data on M-AMBI in areas where the tool was developed. To this end, we use macrofaunal data from three well studied sites in north-western Europe to examine the effects of using taxonomic level data higher than species on M-AMBI. Using the European datasets M-AMBI ES classification was shown to be robust to changes in taxonomic level data. We test the suitability of family-level M-AMBI for assessing ES in subtropical Hong Kong waters. Family level M-AMBI was useful in detecting stress in Hong Kong, where it successfully detected temporal and spatial shifts in ES in response to seasonal hypoxia and salinity variability, and anthropogenic organic enrichment.     

A systematic survey of leaf and stem anatomical characters in the genus Gaultheria and related genera (Ericaceae)

MIDDLETON, D. J., A systematic survey of leaf and stem anatomical characters in the genus Gaultheria and related genera (Ericaceae). Leaf and stem anatomical characters of 123 species within the Gaultheria group of genera of the tribe Andromedeae are surveyed. A number of characters show considerable variation within a species which limits their taxonomic use. Other characters such as marginal sclerenchyma and, to a lesser extent, the hypodermis, the presence of adaxial stomata, the presence of free fibres and the pith type were of more taxonomic interest. These characters are discussed in relation to the generic and infrageneric classification of the group.     

An update to modern taxonomy (2011) of freshwater planktic heterocytous cyanobacteria

It is essential for the modern taxonomic classification of cyanobacteria to be continually updated in accordance with revisions based on molecular sequence comparisons and combined with morphological features, ecophysiological characters and other biochemical and molecular markers (“polyphasic approach”). Several genera, which are characterized by their planktic life form and contain indicator species important for the evaluation of aquatic biocenoses in majority of water bodies are recognized in the monophyletic group of heterocytous cyanobacteria. Current taxonomic revisions (and nomenclatoric consequences) of the specific contents of these heterocytous cyanobacterial generic units are covered by this article. Among these genera, 12 contain only planktic species, three remaining genera contain both planktic and non-planktic species. Comments and suggestions for future research are stressed especially in the ecologically distinct genera, which includes species dominating in the plankton of various reservoir types.     

Molecular phylogeny and systematics of the highly polymorphic Rumex bucephalophorus complex (Polygonaceae)

Rumex bucephalophorus is a very polymorphic species that has been subjected to various taxonomic studies in which diverse infraspecific taxa have been recognised on the basis of diaspore traits. In this study we used molecular markers (ITS and AFLP) to explore this remarkable diversity, to test previous hypotheses of classification, and attempt to explain biogeographic patterns. Results show that R. bucephalophorus forms a monophyletic group in which diversification began around 4.2 Mya, at the end of Messinian Salinity Crisis. The two molecular markers clearly show a deep divergence separating subsp. bucephalophorus from all other subspecific taxa, among which subsp. canariensis also constitutes a separate and well distinguishable unit. In contrast, subspecies hispanicus and subsp. gallicus constitute a monophyletic group in which three subgroups can be recognised: subsp. hispanicus, subsp. gallicus var. gallicus and subsp. gallicus var. subaegeus. However, these three subgroups are not clearly distinguished genetically or morphologically, so that in formal classification it would be preferable to treat them at the varietal level.     

Morphological studies in Pandanaceae

In this study the anatomical features of leaves of 3 9 species of Malayan Pandanus (Pandanaceae) are assessed, chiefly from the taxonomic approach. The results show that systematic foliar anatomy (chiefly epidermal and stomatal characters) is of considerable value at the infrageneric, supraspecific level, and that species-clusters corresponding to sectional taxa can be recognized and denned. An infrageneric classification of the Malayan species based on anatomical data is presented. The composition of several generic sections is revised. Some sections appear very uniform, others are internally diverse, with respect to the anatomical features studied. Twelve sections are upheld in Malaya.     

Variation and evolution inLinum tenuifolium (Linaceae)

The phenetic variation inL. tenuifolium s.l. was assessed using multivariate analyses of 27 characters found to be variable within the species. These results are discussed and interpreted in the context of the reproductive biology, chromosome number and ecological responses of the taxa. Evidence suggests that both the self-compatible and tetraploid races were derived independently from a self-incompatible, diploid type. Although no taxonomic scheme is compatible with all of the evidence presented, the study supports a recent decision to recognize four taxa at subspecific level.     

The influence of spatial scale on the congruence of classifications circumscribing morphological units of biodiversity

Aim The ‘taxonomic impediment’ has led to a growing trend in ecology and conservation biology to use operational surrogates for species within the context of a particular research project. Because such ‘parataxonomic’ classifications are typically spatially limited in scope, we examined the influence of increasing spatial scale on the congruence of two such approaches with a more traditional taxonomic classification. Location Sturt National Park, north‐western New South Wales, Australia. Methods Specimens of two ant genera, Camponotus and Rhytidoponera, were classified by three independent methods. The ‘parataxonomic’ classification assigned specimens to morphospecies without specialist taxonomic expertise; the ‘taxonomic’ classification assigned specimens to either described species or, where this was not possible, to operational taxonomic units (OTUs) using specialist taxonomic expertise; the ‘phenetic’ classification assigned specimens to putative species using a K‐means partitioning algorithm on basic morphometric data. Specimens of each genus were pooled into ‘assemblages’, which were defined at multiple spatial scales using a nested sampling design. Congruence in the interspecimen relationships of the different classifications was tested for each assemblage using pair‐wise Mantel correlations. Results Classification congruence tended to decrease with increasing spatial scale. There were, however, clear differences between the genera. Parataxonomic–taxonomic congruence was consistently greater for Camponotus, while phenetic–taxonomic congruence showed the opposite pattern. Conclusions Observed patterns in classification congruence are attributed to two principal causes: (i) within‐species morphological variation, including ecotypic variation in Rhytidoponera and caste polymorphism in Camponotus; and (ii) a limit to the morphological similarity of potentially competing species at small spatial scales. Regardless of cause, the decline in agreement as the spatial scale of observation is increased has important implications for the measurement of biodiversity, particularly when comparing samples over regional, continental, and global scales.     

Chromosome numbers and genome size variation in Indian species of Curcuma (Zingiberaceae)

BACKGROUND AND AIMS: Genome size and chromosome numbers are important cytological characters that significantly influence various organismal traits. However, geographical representation of these data is seriously unbalanced, with tropical and subtropical regions being largely neglected. In the present study, an investigation was made of chromosomal and genome size variation in the majority of Curcuma species from the Indian subcontinent, and an assessment was made of the value of these data for taxonomic purposes. METHODS: Genome size of 161 homogeneously cultivated plant samples classified into 51 taxonomic entities was determined by propidium iodide flow cytometry. Chromosome numbers were counted in actively growing root tips using conventional rapid squash techniques. KEY RESULTS: Six different chromosome counts (2n = 22, 42, 63, >70, 77 and 105) were found, the last two representing new generic records. The 2C-values varied from 1.66 pg in C. vamana to 4.76 pg in C. oligantha, representing a 2.87-fold range. Three groups of taxa with significantly different homoploid genome sizes (Cx-values) and distinct geographical distribution were identified. Five species exhibited intraspecific variation in nuclear DNA content, reaching up to 15.1 % in cultivated C. longa. Chromosome counts and genome sizes of three Curcuma-like species (Hitchenia caulina, Kaempferia scaposa and Paracautleya bhatii) corresponded well with typical hexaploid (2n = 6x = 42) Curcuma spp. CONCLUSIONS: The basic chromosome number in the majority of Indian taxa (belonging to subgenus Curcuma) is x = 7; published counts correspond to 6x, 9x, 11x, 12x and 15x ploidy levels. Only a few species-specific C-values were found, but karyological and/or flow cytometric data may support taxonomic decisions in some species alliances with morphological similarities. Close evolutionary relationships among some cytotypes are suggested based on the similarity in homoploid genome sizes and geographical grouping. A new species combination, Curcuma scaposa (Nimmo) Skornick. & M. Sabu, comb. nov., is proposed.     

中国苦草属(Vallisneria)植物命名考及区分要点

由于苦草属（Vallisneria L.）植物的繁殖器官微小,营养器官相似且变异较大,使该属植物的鉴定和命名较混乱。笔者通过对有关文献的考证和长期跟踪观察,对我国记载的苦草属3种植物——苦草（Vallisneria natans（Lour.）Hara）、刺苦草（V.spinulosa Yan）、密刺苦草（V.denseserrulata Makino）的命名历史进行了梳理,并对这3种植物的形态特征进行了详细描述。根据种间形态差异,可为苦草属植物的分类鉴定和相关研究提供一定的参考。     

The ITS-2 of the nuclear rDNA as a molecular marker for populations, species, and phylogenetic relationships in Triatominae (Hemiptera: Reduviidae), vectors of Chagas disease

The nucleotide sequences of the rDNA second internal transcribed spacer (ITS-2) of 31 populations of 12 and 3 species of the two main Triatominae tribes Triatomini and Rhodniini, including the most important Chagas disease vectors, were obtained. Sequence comparisons and parsimony, distance, and maximum-likelihood analyses indicate that ITS-2 is a useful marker for resolving supraspecific, specific, subspecific, and even sometimes population-level relationships in Triatominae. Results were markedly different between species of Triatomini and Rhodniini, suggesting polyphyly. Phylogenetic trees support an old divergence between South American and North-Central American Triatomini and query the validity of some genera (Dipetalogaster, Psammolestes). The very low sequence variation between species of the phyllosoma complex suggests that subspecific ranking would be more appropriate. Triatoma dimidiata proves to be a clearly differentiated species, with several populations evidencing a clinal variation along a north-south axis and a population from Yucatan showing differences consistent with specific status.