Application and microbial preparation of <Emphasis Type="SmallCaps">d</Emphasis>-valine

d-Valine is an important organic chiral source and has extensive industrial application, which is used as intermediate for the synthesis of agricultural pesticides, semi-synthetic veterinary antibiotics and pharmaceutical drugs. Its derivatives have shown great activity in clinical use, such as penicillamine for the treatment of immune-deficiency diseases, and actinomycin D for antitumor therapy. Fluvalinate, a pyrethroid pesticide made from d-valine, is a broad-spectrum insecticide with low mammalian toxicity. Valnemulin, a semi-synthetic pleuromutilin derivative synthesized from d-valine, is an antibiotic for animals. Moreover, d-valine is also used in cell culture for selectively inhibiting fibroblasts proliferation. Due to its widespread application, d-valine is gaining more and more attention and some approaches for d-valine preparation have been investigated. In comparison with other approaches, microbial preparation of d-valine is more competitive and promising because of its high stereo selectivity, mild reaction conditions and environmental friendly process. So far, microbial preparation of d-valine can be mainly classified into three categories: microbial asymmetric degradation of dl-valine, microbial stereoselective hydrolysis of N-acyl-dl-valine by d-aminoacylase, and microbial specific hydrolysis of dl-5-isopropylhydantoin by d-hydantoinase coupled with d-carbamoylase. In this paper, the industrial application of d-valine and its microbial preparation are reviewed.     

History of agriculture in Mikkeli Orijärvi,eastern Finland as reflected by palynological and archaeological data

The introduction and development of cultivation in eastern Finland was studied by pollen and charcoal analysis of a palaeomagnetically dated sediment profile from Lake Orijärvi, in the vicinity of permanent prehistoric fields. The earliest changes of possibly anthropogenic origin are visible in the pollen data from 1630 b.c. onwards and indications of human impact become more evident from 500 b.c. onwards. According to finds of cereal pollen and AMS-dating of charred cereal grains from the oldest field layer, the onset of cultivation can be dated to the Merovingian period around a.d. 600. To a significant extent the pollen data reflect only the cultivation of Secale during the first 600 years. The marked intensification of agricultural activities including cultivation in permanent fields only becomes evident in the pollen data from about a.d. 1050 to 1080 onwards and the most intensive land use phase dates to a.d. 1300–1965. Archaeological and palaeoecological material indicate that swidden cultivation and permanent field cultivation were in use simultaneously during the late Iron Age. The combination of these techniques together with animal husbandry and hunting formed a subsistence strategy in the climatic border-zone outside the centres of the agricultural core areas.     

Boreal forest dynamics in north-eastern Sweden during the last 10,000 years based on pollen analysis

A pollen record obtained from a 2.2-m sediment succession deposited in a small lake in the province of Västerbotten, north-eastern Sweden, reveals the presence of continuous forest cover since 8,500 calendar years before present (cal b.p.). Forest with abundant Pinus (pine) and Betula (birch) initially colonized the area, followed by a dominance of deciduous trees, primarily Betula, from ca. 8,000 to ca. 3,200 cal b.p. Pollen accumulation rates of Quercus (oak), Ulmus (elm) and Tilia (linden) suggest the possible local presence of these thermophilous tree species during this period. The climate gradually became colder and moister around 3,500 cal b.p. and an increased abundance of Sphagnum spores indicates paludification. Picea (spruce) became established around 3,200 cal b.p. and less than 500 years later this was the dominant tree species around the lake. The fire frequency as inferred from charcoal particles exhibits a general increase from ca. 3,000 cal b.p. with subsequent charcoal accumulation maxima at around 2,800 cal b.p., 1,700 cal b.p. and in recent time. The human influence on vegetation was significant during the last 200–300 years. Soil erosion increased substantially and fern spores amount to ca. 55% of the total pollen assemblage in the uppermost samples. These results suggest an extensive anthropogenic impact on the local forest ecosystem, with abundant logging, burning and ditching in the vicinity of the lake. Independent evidence of sub-recent human-induced environmental change is provided by historical accounts. Complementary information on catchment soil development and aquatic nutrient status was provided by records of magnetic susceptibility and elemental carbon, and nitrogen contents obtained from the same sediment core.     

Electron microscopy of ribosomes isolated from young green fruit of the apple tree

Many studies have been made on ribosomes both in plant and animal material, on account of their importance in the proteosynthesis of protein. In plant material, studies have been made on the pea by Ts'o andBonner (1956), Ts'o,Bonner andVinograd (1958),Setterfield et al. (1960) andSisakyan et al. (1963). Ribosome from spinach were investigated byLyttleton (1962) andMurakami (1963) and fromClivia byMikulská et al. (1962). As part of a wider study of the mechanism of biosynthesis of nucleic acids in apple trees, we isolated ribosomes from the young green fruit and studied them by means of electron microscopy. Young apples were selected because cell division is very intense at this stage of growth of the apple.     

Some chromosome numbers of the CzechoslovakLeguminosae

Chromosome numbers of the Czechoslovak species of the genusLotus, from various localities have been determined. The paper includes the speciesLotus uliginosus Schkuhr,L.tenuis Waldst. etKit. andL. borbásii Ujhelyi.     

Glacial relics in the bryoflora of the highlands Českomoravská vrchovina (Bohemian-Moravian Highlands); Their habitat and cenotaxonomic value

The paper sums up the information which the author has so far collected about the habitats and phytocenotic conditions of the glacial relics ofScorpidium scorpioides (Hedw.) Limpr.,Calliergon trifarium (Web. etMohr.)Kindb.,Paludella squarrosa (Hedw.) Brid., andMeesia triquetra (Hook. etTayl.)Aongstr. in the Highlands ?eskomoravská vrchovina (Bohemian-Moravian Highlands) in Czechoslovakia. Simultaneously, it presents a survey of the localities in which the occurrence of these species has been ascertained up to now.     

Determining the responses of vegetation to natural processes and human impacts in north-eastern Poland during the last millennium: combined pollen,geochemical and historical data

Pollen, charcoal and geochemical investigations were carried out on annually laminated sediments of Lake ?abińskie (54°07′54.5″N; 21°59′01.1″E) and the results were combined with historical and climate data to better understand the mechanism behind plant cover transformations. A millennium-long record of environmental history at 6-years time resolution permitted an assessment of vegetation responses to past human impact and climate fluctuations. Our results show that the history of the region with repeated periods of warfare, epidemics, famine and crop failures is well reflected by environmental proxies. Before the Teutonic Order crusade (ad 1230–1283), agricultural activities of the Prussian tribes were conducted at a distance from the studied lake and caused slight disturbances of local forests. A stronger human impact was registered after ca ad 1460. We confirm that co-domination of pine forests with spruce and oak-hornbeam forests on drier habitats as well as the presence of birch and alder woods on wet surfaces near the lake lasted until ad 1610. We identified a transition period of 20 years between ad 1590 and 1610, when forest cover was significantly reduced and the area was partly transformed into open land used for farming activities. The comparison of our data with other pollen datasets from the region confirms significant spatio-temporal differences in the initiation of large-scale woodland clearings in the Great Masurian Lake District. A strong increase in local cultivation was noted after ad 1750 and became even stronger in the period ad 1810–1940. The last 60 years experienced a succession from arable fields and open grasslands to more tree-covered habitats overgrown by birch and alder.     

Beiträge zur Sedimentation und fossilführung des hunsrückschiefers 14.Viriatellina fuchsi (Kutscher, 1931) im Hunsrückschiefer und im Tentaculitenknollenkalk thüringens

The new genusViriatellina Bou?ek, 1964 unites the two older species namedNovakia gemündina Runzheimer, 1932 andTentaculites fuchsi Kutscher, 1931. ThusViriatellina gemuendina (Runzheimer) is cancelled, on the other handViriatellina fuchsi (Kutscher) remains valid. RecentlyViriatellina fuchsi (Kutscher) has been found in the tentaculitiferous limestone of Thuringia.     

Stability of Minimum Essential Medium functionality despite l-glutamine decomposition

l-Glutamine (l-Gln) instability in liquid media is a well-known fact. Also, negative effect of ammonia, one of the l-Gln degradation products, on viability of many cell cultures and on replication of different viruses has been described. However, negative effects of ammonia have been reported in doses excessively exceeding those that could be generated in regularly used liquid culture media due to spontaneous l-Gln breakdown (below 2 mM). Traditional virus vaccine production processes have been established and registered involving l-Gln containing media use. Eventual culture media replacement in the regular production process belongs to the major regulative changes that require substantial financial expenses. The aim of this study was to evaluate the effect of storage of Minimum Essential Media with Hanks salts on their relevant biological functions during virus vaccine production process in relation to l-Gln decrease. Our results show a cell type dependent effect of spontaneous l-Gln degradation during medium storage. They also suggest that for cell cultures used in measles, mumps, and rubella virus production the media retain their functionality in respect to cell viability or virus growth over a certain time window despite l-Gln degradation.     

Glacial relics in the bryoflora of the highlands Českomoravská vrchovina (Bohemian-Moravian Highlands); Their habitat and cenotaxonomic value

The paper sums up the information which the author has so far collected about the habitats and phytocenotic conditions of the glacial relics ofScorpidium scorpioides (Hedw.) Limpr.,Calliergon trifarium (Web. etMohr.) Kindb.,Paludella squarrosa (Hedw.) Bred., andMeesia triquetra (Hook. etTayl.) Aongstr. in the Highlands ?eskomoravská vrchovina (Bohemian-Moravian Highlands) in Czechoslovakia. Simultaneously, it presents a survey of the localities in which the occurrence of these species has been ascertained up to now.     

Stand-scale reconstruction of late Holocene forest succession on the Gdańsk Upland (N. Poland) based on integrated palynological and macrofossil data from paired sites

This study concerns the stand-scale palaeoecological reconstruction of the subsequent stages of late Holocene vegetation development on habitats recently covered by beech-dominated woodland in the southern Baltic region. The data, based on pollen, non-pollen palynomorphs, macrofossil and charcoal analyses from two close-lying sites, demonstrated that each of the subsequent late Holocene shifts in dominating forest communities took place because of human impact coupled with climatic events or episodic human-made disturbances. Shifts from the Tilia dominated forest to the Quercus-Corylus plant community at around 3300 bc was most probably driven by the coupled effect of climate change and human activity. Human impact was the primary driver of the final Corylus decline and concurrent major Carpinus expansion at c. 460 bc, and the Carpinus decline followed by Fagus expansion at c. ad 900. Carpinus had been lingering on the edge of a major expansion in the local forest for at least 2,500 years while Fagus had persisted in a small admixture for no fewer than 1,500 years before becoming important forest constituents. Our data illustrate the role of episodic disturbances as turning points that initiate long-term vegetation changes.     

Differentiation of species in Gonioloboceras

The type specimen ofGonioloboceras goniolobum (Meek), rediscovered by Spath in the British Museum, is the foundation for a more accurate comparative study of this and other species ofGonioloboceras.Gonioloboceras described asG. goniolobum byElias in 1938 is differentiated asGonioloboceras schmidti, new species. Suture sets (new term) for several growth stages inG. goniolobum (Meek),G. welleriSmith,G. schmidtiElias, G.eliasiMiller &Owen, andG. asiaticumLibrovitch are assembled and used for differentiation of the species.The Kazakhstan goniatite faunule containingG. asiaticum is considered of very late Pennsylvanian age.     

The variability of critical species ofLotus L. in Iran and in the neighbouring countries I. the circle ofL. corniculatus L. andL. gebelia Vent.

The region of Iran, Iraq, Afghanistan and the neighbouring countries is important for some groups of the speciesLotus L., especially those of the circle ofL. corniculatus L. andL. gebelia Vent. The first group is represented by the speciesL. corniculatus L. with 4 subspecies (3 of which are important for this region), andL. tenuis Waldst. etKit. which here attains the eastern boundary of the continuous area of distribution, and by the eastern speciesL. krylovii Schischk. etSerg. andL. rechingeri Chrtková-?ertová. The second group is represented by the speciesL. gebelia Vent.,L. michauxianus Ser. in DC. andL. libanoticus Boiss. their areas of distribution covering mostly those regions. Most of the species show considerable variability within the species.     

Importing statistical measures into Artemis enhances gene identification in the <Emphasis Type="Italic">Leishmania</Emphasis> genome project

Background

Seattle Biomedical Research Institute (SBRI) as part of the Leishmania Genome Network (LGN) is sequencing chromosomes of the trypanosomatid protozoan species Leishmania major. At SBRI, chromosomal sequence is annotated using a combination of trained and untrained non-consensus gene-prediction algorithms with ARTEMIS, an annotation platform with rich and user-friendly interfaces.

Results

Here we describe a methodology used to import results from three different protein-coding gene-prediction algorithms (GLIMMER, TESTCODE and GENESCAN) into the ARTEMIS sequence viewer and annotation tool. Comparison of these methods, along with the CODON USAGE algorithm built into ARTEMIS, shows the importance of combining methods to more accurately annotate the L. major genomic sequence.

Conclusion

An improvised and powerful tool for gene prediction has been developed by importing data from widely-used algorithms into an existing annotation platform. This approach is especially fruitful in the Leishmania genome project where there is large proportion of novel genes requiring manual annotation.

     

Remarks on the Nomenclature of“Dryopteris borreri Newman I854”

The nameDryopteris borreri Newman 1854 was not validly published in the specific rank. A new nameDryopteris pseudo-mas (Wollaston) Holub etPouzar 1967 is proposed as the correct name for this European species.     

Zum Problem der sexuellen Fortpflanzung in der PeridineengattungCeratium

On the basis of older literature and our new observations, a hypothesis is presented to illustrate our present view on the sexual cycle of the Ceratia. In the fresh-waterC. cornutum it has been possible to demonstrate that the “Knäuelstadium” ofBorgert (1910) represents in fact the postzygotene of meiosis. Formerly the “Knäuelstadium” was considered to be a stage of mitosis but, contrary to this view, occurs only in the Praeceratia, i. e. the swarmers emerging in spring from the germinating cysts (Scoczylas 1958). The “Knäuelstadium” has also been observed in marine Ceratia, but in cells of normal shape (Borgert 1910,Schneider 1924), which therefore function as meiocytes. The microswarmers (truncata-, lineata- andlata-forms;Lohmann 1908,Apstein 1910, 1911, and others) are the male gametes which copulate with females similar to vegetative cells, and which in this process are completely (flagellums?) resorbed by the latter. Stages of copulation have been observed in preserved material byApstein (1911),Borgert (1910),Tschirn (1920) and by us, and in the living state inC. horridum also by us. The latter species is monoecious. The marine Ceratia therefore seem to be haplonts in which the zygotes cannot be distinguished from vegetative cells, neither by a resting stage nor by obvious differences in shape. The possibility of diplophasic mitosis, however, has not been excluded.     

Studies in the taxonomy of the Polypores II

The following genera are redefined:Albatrellus S. F. Gray,Heterobasidion Bref.,Haploporus Bond. et Sing. ex Sing.,Fomitopsis P. Karst. andRigidoporus Murrill two new subgenera are described:Polyporus subgen.Dendropolyporus Pouz. (type:Polyporus umbellatus) andRigidoporus subgen.Neooxyporus Pouz. (type:Polyporus latemarginatus); the genusOxyporus (Bourd. etGalz.)Donk is classified as a subgenus of the genusRigidoporus,Murrill and the generaBjerkandera P. Karst. andLeptoporus quél. are classified as subgenera of the genusTyromyces P. Karst. The new subfamilyAlbatrelloideae Pouz. (genera:Albatrellus andGrifola) is described and 14 new specific combinations are made. The new genusIrpicodon Pouz. (type:Irpex pendulus) is proposed.     

Synthesis of a tetra- and a trisaccharide related to an anti-tumor saponin “Julibroside J<Subscript>28</Subscript>” from <Emphasis Type="Italic">Albizia julibrissin</Emphasis>

Simple and convergent synthesis of a tetra- and a trisaccharide portions of an antitumor compound Julibroside J₂₈, isolated from Albizia julibrissin, that showed significant in vitro antitumor activity against HeLa, Bel-7402 and PC-3M-1E8 cancer cell lines is reported. The tetrasaccharide has been synthesized as its p-methoxyphenyl glycoside starting from commercially available d-glucose, l-rhamnose and l-arabinose. The trisaccharide part has been synthesized from commercially available N-acetyl d-glucosamine, d-fucose and d-xylose using simple protecting group manipulations. Sulfuric acid immobilized on silica has been used successfully as a Brönsted acid catalyst for the crucial glycosylation steps.     

Über böhmische und türkische Vertreter vonAnetoceras (Ammon., Unterdevon)

The Bohemian speciesAnetoceras solitarius (Barrande 1865) is re-described, including the TurkishA. barrandei (De Verneuil 1866). The other Bohemian species areA. aff.advolvens Erben 1960 and?A. fritschi (Barrande 1877). A new speciesA. recticostatum n. sp. is described from the German Lower Devonian, and several still problematical species of the genus are discussed. Finally, the supposed phylogenetic position and the relations ofAnetoceras are pointed out. The Upper SiegenianA. hunsrueckianum Erben 1960 is regarded as most primitive coiled ammonoid and as connecting link between the bactritids, and early coiled ammonoids.Mimosphinctes Eichenberg is considered to be a descendant fromAnetoceras.