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1.
The present work evaluates the use of intermolecular polypeptide–detergent 1H through-space connectivities to determine the bilayer exposed-surface and the bilayer topography of membrane polypeptides solubilized in non- deuterated detergents. For this purpose, the membrane peptide gramicidin A, solubilized in non-deuterated sodium dodecylsulfate as its dimeric 6,3 helix channel conformation was used. For this peptide, a high-resolution 3D structure, as well as reasonable assumptions concerning its membrane arrangement, exist. Band-selective 2D NOESY, ROESY and 3D NOESY-NOESY experiments were used to detect detergent–polypeptide through-space correlations in the presence of an excess of the non-deuterated detergent. The observed intermolecular NOEs appear to be strongly temperature- dependent. Based on the known 3D structure of the gramicidin channel, the detergent–polypeptide through-space correlations appear to be selective for 1H located on the hydrophobic surface of gramicidin A with very few contributions from interior 1H or water-exposed 1H. It is suggested that this method can be of general use to evaluate the bilayer-exposed surface and topography of membrane peptides and small proteins. 相似文献
2.
Leah S. Cohen Boris Arshava Racha Estephan Jacqueline Englander Heejung Kim Melinda Hauser Oliver Zerbe Marco Ceruso Jeffrey M. Becker Fred Naider 《Peptide Science》2008,90(2):117-130
Fragments of G protein‐coupled receptors (GPCRs) are widely used as models to investigate these polytopic integral–membrane, signal‐transducing molecules, but have proven difficult to prepare in quantities necessary for NMR analyses. We report on the biosynthesis of two double transmembrane (TM) containing fragments of Ste2p, the α‐factor GPCR from the yeast Saccharomyces cerevisiae. Ste2p(G31‐T110) [TM1‐TM2] and Ste2p(R231‐S339) [TM6‐TM7‐CT40] were expressed as TrpΔLE fusion proteins in Escherichia coli and released by CNBr cleavage. Expression yields were optimized using different strains and induction parameters, and by performing CNBr cleavage directly on inclusion bodies. Nonlabeled and uniformly labeled [15N]‐TM1‐TM2 and TM6‐TM7‐CT40, as well as uniformly labeled [15N,13C]‐TM1‐TM2 and TM1‐TM2 selectively labeled with [15N‐Ala], [15N‐Phe], [15N‐Leu], [15N‐Ile], and [15N‐Val] were prepared. Yields of target peptides with >95% homogeneity varied from 3 mg/L of fermentation ([15N]‐TM6‐TM7‐CT40) to 20 mg/L (selectively labeled TM1‐TM2). The high level biosynthesis and the efficient CNBr processing and purification yields allowed the initiation of a comprehensive biophysical analysis of TM1‐TM2 and TM6‐TM7‐CT40. Sodium dodecyl sulfate (SDS)‐polyacrylamide gel electrophoresis showed that TM1‐TM2 was monomeric in this micellar environment, whereas TM6‐TM7‐CT40 migrated as a dimer. CD analysis indicated that TM1‐TM2 was highly helical in SDS and 1‐palmitoyl‐2‐hydroxy‐sn‐glycero‐3‐[phospho‐RAC‐(1‐glycerol)], but had a tendency to aggregate in dodecylphosphocholine micelles. Similar results were found with TM6‐TM7‐CT40. Conditions for NMR measurements were optimized, and both TM1‐TM2 and TM6‐TM7‐CT40 exhibited more than 90% of the expected crosspeaks in the [15N,1H]‐HSQC spectrum. These findings set the stage for the determination of the 3D structure of these large domains of a GPCR in micelles using high‐resolution NMR. © 2008 Wiley Periodicals, Inc. Biopolymers (Pept Sci) 90: 117–130, 2008. This article was originally published online as an accepted preprint. The “Published Online” date corresponds to the preprint version. You can request a copy of the preprint by emailing the Biopolymers editorial office at biopolymers@wiley.com 相似文献
3.
《Molecular membrane biology》2013,30(3-4):297-322
The thermal stability of lipid-free rhodopsin in solutions of a homologous series of alkyltrimethylammonium bromide detergents and one nonionic detergent, dodecyl-β-maltoside, has been studied as a function of detergent concentration. Rhodopsin thermal stability increases with increasing chain length within the homologous series of ionic detergents, and for chain lengths greater than 10 carbon atoms increases with increasing detergent concentration up to a “critical” concentration that depends on the chain length. Stability also increases with increasing detergent concentration for rhodopsin in solutions of the nonionic detergent. These results may be rationalized in terms of the dependence of micelle packing density on the detergent chain length, head group, and concentration. 相似文献
4.
Liquid crystalline phases of sonicated type I collagen 总被引:1,自引:0,他引:1
M M Giraud-Guille 《Biology of the cell / under the auspices of the European Cell Biology Organization》1989,67(1):97-101
The assembly properties of concentrated solutions of type I collagen molecules are compared before and after a 5-min sonication, breaking the 300-nm triple helices into short segments of about 20 nm, with a strong polydispersity. The collagen concentration of these solutions, sonicated or not, was increased up to 100 mg/ml by slow evaporation of the solvent. Whereas the non-sonicated solutions remain isotropic, the sonicated solutions transform after a few hours into a twisted liquid crystalline phase, well recognizable in polarizing microscopy. The evidence of a twisted assembly of collagen triple helices in vitro is new and relevant in a biological context since it was reported in various collagen matrices. 相似文献
5.
Membrane events in exocytosis were studied by examining the effect of different detergents on the K+-stimulated release of noradrenaline in the secretory cell line PC 12. The nonionic detergent Triton X-100 and the cationic detergent cetyltrimethylammonium bromide (CTAB) inhibit the noradrenaline release evoked by 55 mM K+ by 50% at very low concentrations (30 microM and 10 microM, respectively). These values are tenfold lower than the critical micellar concentrations (CMC). No such effect was seen with the anionic detergent sodium dodecyl sulphate (NaDodSO4). The inhibitory effect of 30 microM Triton X-100 is reversible, and the recovery from inhibition correlates with the loss of detergent from the cells as demonstrated by binding studies using [3H]Triton X-100. The possible relationship between this inhibition of secretion and the structural properties of the detergent was investigated. The inhibition in the presence of purified Triton X-100 subfractions turned out to be a function of the length of the oligometric ethyleneglycol chain (C6 to C26). The maximal effect was observed for Triton X-100 molecules having a chain length of 16 carbon atoms, which can penetrate just half of the lipid bilayer of the membrane. Additionally, the phase transition at 13-14 degrees C observed in an Arrhenius plot of noradrenaline release in stimulated cells was abolished. In the presence of 30 microM Triton X-100, 22Na+ uptake, 86Rb+ release, and 45Ca2+ uptake were reduced by 50-60%. These data suggest that the site of action of Triton X-100 is at the level of altering the movement of ions in PC 12 cells during the stimulatory phase of secretion. 相似文献
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7.
Noam Adir 《Acta Crystallographica. Section D, Structural Biology》1999,55(4):891-894
Oxygen-evolving photosystem II reaction centres (RCII) isolated from both spinach and pea have been crystallized. A single crystal form grew from RCII monomers in the presence of nine different three-component mixtures of non-ionic detergents and heptane-1,2,3-triol. The crystals grew as hexagonal rods with dimensions of up to 1 × 0.3 × 0.3 mm. The crystals diffracted to a maximum resolution of 6.5 Å and belong to a hexagonal space group with unit-cell parameters a = 495, b = 495, c = 115 Å, α = β = 90, γ = 120°. The growth of a single crystal form in the presence of such a large variety of detergents suggests a very limited range of crystal lattice formation sites in the RCII complex. 相似文献
8.
Various agents alter mammalian cells so that they rapidly become nonspecifically permeable to substances that ordinarily do not penetrate intact cells. Thus, toluene renders liver cells permeable to nucleotides and macromolecules. Tween 80 and Tween 60 act in similar fashion, and the effect is reversible. Dextran sulfate reversibly alters the permeability of Ehrlich ascites tumor cells, which offers a tool for studying the control of macromolecular syntheses and other processes. Brief exposure to external ATP alters the permeability of certain transformed mouse cells but not of untransformed cells. The effect of ATP is rapidly reversible. 相似文献
9.
David A. Whitmore Kenneth P. Wheeler 《Journal of biochemical and biophysical methods》1980,2(3):133-138
A simple one-dimensional thin-layer chromatographic separation method is described that permits separation and estimation of the non-ionic detergents Lubrol WX, Triton X-100 and Brij 58 in the presence of the common natural lipids. 相似文献
10.
The objective of this investigation was to evaluate an acetic acid ester of monoglycerides made from edible, fully hydrogenated palm oil (AC-70) as a suppository base and compare it with a commercially available semisynthetic base (Suppocire AI). Benzocaine and miconazole were used as model drugs. Suppositories were prepared by the fusion method. The drug loads in the suppositories were kept at 2% to 5% (wt/wt). In vitro release of drug from the suppositories into Sorensen's phosphate buffer (pH 7.4) was studied using a US Pharmacopeia dissolution apparatus 1 and a spectrophotometer. The melting behavior of the bases and the physical state of the drug in the suppositories were studied using a differential scanning calorimeter (DSC). Powder x-ray diffractometry was used to study any possible polymorphic changes in the AC-70 base during formulation and storage. In vitro release studies revealed that the release of benzocaine from the AC-70 suppository was substantially slower than that of the commercial AI base. At a 2.5% (wt/wt) benzocaine load, the release of drug from the AC-70 suppositories was found to be linear. This slow and linear release was attributed to the physical property of the base, which forms liquid crystalline phases in the aqueous dissolution medium. The lyotropic liquid crystalline phase has the ability to incorporate drug into its structure and can control the release kinetics of the drug from such a system. The apparent pH of the release medium (water) was decreased by 1 to 1.5 pH units when the AC-70 base was used. The DSC studies revealed that the melting range of the AC-70 base is 36 degrees C to 38 degrees C, which is ideal for suppository formulations. The results of these studies support the possibility of using this new base for slow-release suppository formulations. This base may be of particular interest for a drug that requires an acidic environment to maintain its activity. 相似文献
11.
A long-term experiment was performed with Branchiura sowerbyi in order to assess possible effects of LAS sorbed to sediment on its reproductive cycle, using concentrations in sediment 2–5 times higher than those calculated for the LC50 values of LAS dissolved in water. No significant effects were observed during the whole experiment, so that we can confirm that LAS adsorbed on sediment has a much lower influence on the examined animals than LAS dissolved in water. 相似文献
12.
Patrick J. Loll 《Acta Crystallographica. Section F, Structural Biology Communications》2014,70(12):1576-1583
At the time when the first membrane‐protein crystal structure was determined, crystallization of these molecules was widely perceived as extremely arduous. Today, that perception has changed drastically, and the process is regarded as routine (or nearly so). On the occasion of the International Year of Crystallography 2014, this review presents a snapshot of the current state of the art, with an emphasis on the role of detergents in this process. A survey of membrane‐protein crystal structures published since 2012 reveals that the direct crystallization of protein–detergent complexes remains the dominant methodology; in addition, lipidic mesophases have proven immensely useful, particularly in specific niches, and bicelles, while perhaps undervalued, have provided important contributions as well. Evolving trends include the addition of lipids to protein–detergent complexes and the gradual incorporation of new detergents into the standard repertoire. Stability has emerged as a critical parameter controlling how a membrane protein behaves in the presence of detergent, and efforts to enhance stability are discussed. Finally, although discovery‐based screening approaches continue to dwarf mechanistic efforts to unravel crystallization, recent technical advances offer hope that future experiments might incorporate the rational manipulation of crystallization behaviors. 相似文献
13.
Huan Li Qiong Wu Ruimin Zhou Yanan Shi Chen Yang Yajie Zhang Jianqi Zhang Wenjun Zou Dan Deng Kun Lu Zhixiang Wei 《Liver Transplantation》2019,9(6)
Compared with nonfullerene‐based polymer solar cells, all‐small‐molecule solar cells normally show low power conversion efficiencies (PCEs) due to their low fill factors (FFs). Molecular stacking orientation and phase separation are the main factors affecting the performance of all‐small‐molecule solar cells. In this work, two liquid‐crystalline small‐molecule donors are designed and synthesized and a novel nonfullerene acceptor with good crystallinity developed. Owing to the face‐on orientation of the component molecules and appropriate phase separation in the active layer, a high FF of over 70% and a PCE of 10.7% are obtained from the resulting solar cells; these values are among the best obtained thus far for all‐small‐molecule solar cells. The high FF reported here is significant for a further design of high‐performance all‐small‐molecule solar cells. 相似文献
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15.
We report the results of research on acute and chronic effects of linear alkylbenzensulfonate (LAS) on two tubificid species. 96 h LC50 assay values were estimated at 10° for Limnodrilus hoffmeisteri and Branchiura sowerbyi exposed to different concentrations of LAS dissolved in water, both with and without sediment. The presence of sediments modified LAS toxicity and increased values: NOEC and LOEC resulted in values 2.5 times higher for Branchiura sowerbyi and 4–4.5 times for Limnodrilus hoffmeisteri, when the sediments were present. The chronic effects induced by a long exposure to LAS were evaluated for different stages of the biological cycle of Branchiura sowerbyi. Using concentrations between the NOEC and LOEC (0.5, 2.5, and 5 ppm), with control, we could observe that: 1) at 5 ppm the cocoons were laid precociously compared to controls, 2) in all treated series the number of cocoons was lower than in controls, 3) the mean number of oocytes per cocoon was lower for the worms submitted to LAS, compared to the control, 4) the period of embryonic development was similar for all used concentrations and for control, and 5) the number of degenerated cocoons was unchanged by the LAS treatment. 相似文献
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17.
膜蛋白在诸多生物过程,例如呼吸作用、光合作用、信号识别和分子转运等方面发挥重要作用.近年来,去污剂的快速发展,在一定程度上极大地推动了膜蛋白研究的进展.去污剂广泛应用于膜蛋白的提取、增溶、纯化、理化性质及结构研究.然而,如何选择合适的去污剂通常是一项复杂的任务.本文从以下两个方面入手,系统地描述了去污剂的重要理化性质及... 相似文献
18.
Renyu Liu Weiming Bu Jin Xi Shirin R. Mortazavi Jasmina C. Cheung‐Lau Ivan J. Dmochowski Patrick J. Loll 《Acta Crystallographica. Section D, Structural Biology》2012,68(5):497-504
Although sodium dodecyl sulfate (SDS) is widely used as an anionic detergent, it can also exert specific pharmacological effects that are independent of the surfactant properties of the molecule. However, structural details of how proteins recognize SDS are scarce. Here, it is demonstrated that SDS binds specifically to a naturally occurring four‐helix bundle protein: horse apoferritin. The X‐ray crystal structure of the apoferritin–SDS complex was determined at a resolution of 1.9 Å and revealed that the SDS binds in an internal cavity that has previously been shown to recognize various general anesthetics. A dissociation constant of 24 ± 9 µM at 293 K was determined by isothermal titration calorimetry. SDS binds in this cavity by bending its alkyl tail into a horseshoe shape; the charged SDS head group lies in the opening of the cavity at the protein surface. This crystal structure provides insights into the protein–SDS interactions that give rise to binding and may prove useful in the design of novel SDS‐like ligands for some proteins. 相似文献
19.
The non-ionic detergents, in particular Tween 20, Tween 80 and Triton X100, stimulated the alkaline phosphatase activity of Cuscuta reflexa homogenates with fructose-1,6-diphosphate and β-glycerophosphate as substrates. The order of activation was usually less than 100%, suggesting that a true latency was not involved. A differential response was found towards the two substrates, indicating the existence of two enzyme activities. 相似文献
20.
Millar JS Cromley DA McCoy MG Rader DJ Billheimer JT 《Journal of lipid research》2005,46(9):2023-2028
Triglyceride (TG), a water-insoluble energy-rich lipid, is secreted by the liver as part of very low density lipoproteins (VLDLs) to supply energy to extrahepatic tissues. Overproduction of VLDL is associated with increased risk of cardiovascular heart disease; this has renewed an interest in factors that affect hepatic TG production. The TG production rate is determined by measuring temporal increases in plasma TG under conditions in which TG hydrolysis by lipoprotein lipase (LPL) is inhibited. The nonionic detergent, Triton WR-1339 (Triton), has commonly been used to inhibit LPL for this purpose. Triton, in addition to inhibition of TG hydrolysis, has properties that have the potential to adversely influence lipoprotein metabolism. Another nonionic detergent, poloxamer 407 (P-407), also inhibits LPL. In these studies, we demonstrate that P-407 is comparable to Triton in the determination of TG production but without the unwanted side effects of Triton. 相似文献