Spatial Distribution of Heavy Metals in Soil and Flora Associated with the Glass Industry in North Central India: Implications for Phytoremediation

The effect of the glass industry on soil metal characterization was assessed at five test sites at five successive distances in a semi-arid area. A comprehensive profile of Zn, Cd, Pb, Ni, Cu, and As levels in soils was obtained. The spatial distribution patterns of integrated contamination indices for these metals show a similar decreasing trend in distribution as we move further from the industrial cluster. There was significant correlation among individual heavy metal concentrations in the soil samples. Integrated contamination indices indicate that 64% of the sites were in the high contamination range and 28% were in the moderate contamination range. A statistically significant difference (P ≤ 0.001) was obtained for each metal on comparing mean metal content among soil samples. Phytoremedial potential of 12 native plant species was also evaluated. Individual elements displayed remarkably different patterns of accumulation in soils as well as plants. Plants established limited capabilities in mobilizing Zn, Pb, Ni, and Cu in the root zone. While Cd, Cu, As, Zn and Pb were predominantly partitioned in shoots, Ni was equally partitioned between shoots and roots. Interestingly, some plants showed a different partitioning trend at higher concentrations of different metals compared to lower concentrations. Potential species for phytoremediation include Calotropis procera (Milk weed), Chenopodium murale (Goosefoot),Poa annua (Annual bluegrass) and Datura stramonium (Thorn apple). None of the species showed phytoremedial potential for Ni and Cu.     

Quantitative genetics of butterfly wing color patterns

Developmental processes exert their influence on the evolution of complex morphologies through the genetic correlations they engender between traits. Butterfly wing color patterns provide a model system to examine this connection between development and evolution. In butterflies, the nymphalid groundplan is a framework used to decompose complex wing patterns into their component pattern elements. The first goal of this work has been to determine whether the components of the nymphalid groundplan are the products of independent developmental processes. To test this hypothesis, the genetic correlation matrices for two species of butterflies, Precis coenia and Precis evarete, were estimated for 27 wing pattern characters. The second purpose was to test the hypothesis that the differentiation of serial homologs lowers their genetic correlations. The “eyespots” found serially repeated across the fore- and hindwing and on the dorsal and ventral wing surfaces provided an opportunity to test this hypothesis. The genetic correlation matrices of both species were very similar. The pattern of genetic correlation measured between the different types of pattern elements and between the homologous repeats of a pattern element supported the first hypothesis of developmental independence among the elements of the groundplan. The correlation pattern among the differentiated serial homologs was similarly found to support the second hypothesis: pairs of eyespots that had differentiated had lower genetic correlations than pairs that were similar in morphology. The implications of this study are twofold: First, the apparent developmental independence among the distinct elements of wing pattern has facilitated the vast diversification in morphology found in butterflies. Second, the lower genetic correlations betweendifferentiated homologs demonstrates that developmental constraints can in fact be broken. The extent to which genetic correlations readily change, however, remains unknown. © 1994 Wiley-Liss, Inc.     

Identification and expression pattern analysis of PtCarA and PtCarB genes in Populus trichocarpa under different nitrogen treatments

• Carbamoyl phosphate synthetase (CPS) catalyses the synthesis of ammonia carbamoyl phosphate (CP), which plays a key role in the biosynthesis of arginine and pyrimidine nucleotides. There are two subunits of the CPS enzyme in Populus trichocarpa, CarA (small subunit) and CarB (large subunit). Only when they coexist can CPS catalyse synthesis of CP. However, it is not clear how CPS responds to nitrogen (N) to affect arginine and pyrimidine nucleotide biosynthesis.
• In this study, bioinformatics methods were used to analyse the expression patterns of genes encoding CarA and CarB, and qRT-PCR and RNA-seq were used to investigate their molecular responses under different N concentrations.
• Phylogenetic analysis revealed that the phylogenetic trees of CarA and CarB had similar topologies. qRT-PCR showed that the PtCarA and PtCarB genes were regulated by N, while their N-regulated patterns differed in different tissues. The expression patterns of PtCarA and PtCarB show a significant positive correlation according to qRT-PCR and RNA-seq. The analysis of promoter cis-acting elements showed that the promoter regions of PtCarA1, PtCarA2 and PtCarB contained some identical cis-acting elements. According to analysis of the phylogenetic tree, expression patterns and promoter elements, we speculate that there might be coevolution among PtCarA1, PtCarA2 and PtCarB.
• This study provides valuable information for further understanding the function of CPS in poplar, especially for N response, and provides new ideas for studying the evolution of gene families related to heteromultimers.

     

Organization of a dispersed repeated DNA element in the Zamia genome

Occurrence and genomic organization of dispersed elements containing ZpS1 satellite repeats have been investigated in a wide representation of species of the old plant genus Zamia (Zamiaceae, Cycadales). In Z. paucijuga, the ZpS1 repeat is organized as long satellite DNA arrays and as short arrays inserted into AT-rich dispersed elements. A comparative study by Southern analysis shows that these unusual dispersed elements containing the ZpS1 repeat are present with different organizations in all investigated Zamia species. In some species these elements are present with a low copy number, while in other species secondary amplification events, involving specific sequence clusters, appear to have generated characteristic dispersed elements in a high copy number. Among Zamia species, several groups share similar restriction patterns, as the Zamia loddigesii complex and the Caribbean species suggesting a general correlation between organization and genomic representation of the dispersed repeated sequence and the pattern of phyletic relationships in the genus. However, the finding of different patterns also among closely related species suggests a complex history of amplifications and losses of these dispersed repetitive elements that cannot be always easily traced through the phylogenetic reconstruction of this ancient plant group.     

Determination of some elements in the cervical mucus of healthy Taiwanese women,by GF-AAS

The levels of seven trace elements such as copper, iron, zinc, selenium, cadmium, chromium, and nickel were determined by graphite furnace-atomic absorption spectrometry in the cervical mucus of 45 women residing in Taiwan, Republic of China. These women were in good health and had no precancerous or cancerous lesions on their cervix. The women were separated into four age groups to establish if there was a relationship between the age of the subjects and the values of these elements in the cervical mucus. By one-way analysis of variance, significant differences in the selenium and nickel concentrations were found among the four age groups (p<0.05). The mean concentration of selenium in each age group was significantly higher for the older women. A significant correlation between age and selenium concentration was found by linear regression (r=0.23, p=0.00048). No significant differences among the concentrations of copper, iron, zinc, cadmium, and chromium were found among these four age groups (p>0.05). The results presented in this work may be considered as baseline values for these elements in the cervical mucus of healthy Taiwanese women for use as reference in studies on cervical diseases and tissue damage.     

A survey of trace elements in pteridophytes

Concentration of 11 trace elements (Ca, Sc, Cr, Fe, Co, Zn, Rb, Cs, Ba, La, and Ce) in 96 pteridophytes (fern and fern ally species) was determined by instrumental neutron activation analysis to evaluate a concentration range for each element and also to find species characteristic in the uptake of trace elements. Asplenium trichomanes was found to accumulate Sc, Cr, and Co to the highest concentrations among 96 pteridophytes. The highest concentration of Ca and Zn was observed for Asplenium obscurum. The other Pteridophytes exhibited only one element whose concentration was the highest. A positive correlation was found between the concentrations of Fe and Sc, and also between the concentrations of Cr and Co. The remarkable accumulation of lanthanides (La and Ce) was observed mainly in diversifying genera (Polystichum and Dryopteris in Dryopteridaceae, Diplazium in Woodsiaceae, and Asplenium in Aspleniaceae).     

Evolution of cis-Acting Elements in 5′ Flanking Regions of Vertebrate Actin Genes

Regulation of the vertebrate actin multigene family involves the recognition of various regulatory sequences (cis-acting elements) that specify the distinct tissue type and developmental program of expression for each actin paralogue, which implies that the distribution of cis-acting elements may be unique for each paralogue gene. To elucidate the evolution of these unique distribution patterns, we improved a method to scan for cis-acting elements in the 5′ flanking regulatory region of genes and used it to analyze five cis-acting elements (SRE, MyoD binding site, Elk-1 binding site, positive and negative YY1 binding sites) of six actin paralogue genes (β and γ cytoplasmic actins, α and γ smooth muscle actins, and α skeletal and α cardiac actins) among various vertebrates. It was shown that although an element(s) may exist in all paralogue genes of the same species, its numbers, compositions, and distribution patterns or even sequences vary remarkably among paralogues, which contributes to their different tissue- and developmental-specific expression. However, each pair of coexpressed paralogues has some certain similarity in distribution patterns. Furthermore, among various orthologues of actin genes derived from diverse vertebrates, the sequences, numbers, and distribution patterns of these cis-acting elements are highly conserved or even identical in the long run of phylogeny of vertebrates. Taken together, the results described above strongly indicate that not only the structures of actins but also their expression patterns are essential in both the phylogeny and the physiology of vertebrates. The distribution patterns of cis-acting elements of various actin genes can be regarded as indicators of both horizontal (paralogous) and vertical (orthologous) evolution of actins. Received: 1 March 1999 / Accepted: 6 August 1999     

Significance of serum trace element status in patients with rheumatic heart disease

It is known that certain trace elements can affect various heart diseases. In this study, we aimed to evaluate the changes in concentrations of certain serum trace elements in patients with chronic rheumatic heart disease (RHD). Serum analysis of selenium (Se), zinc (Zn), and copper (Cu) trace elements was assayed by atomic absorption spectrophotometry. RHD patients had significantly lower serum concentrations of Se and Zn than control subjects (p<0.05 and p<0.001, respectively). However, the serum Cu concentration was significantly higher in RHD patients than in controls (1.93±0.59 μg/L vs 1.06±0.29 μg/L; p<0.001). Similarly, the Cu/Zn ratio in RHD patients was higher than in control subjects (4.70±0.92 vs 1.68±0.45; p<0.001). Additionally, no significant correlation was found among these trace element concentrations and the functional capacity classes (p>0.05). RHD patients had decreased serum Se and Zn element concentrations and increased serum Cu element concentration. We suggest that Se and Zn deficiency might be contributory factors in the development of rheumatic heart disease, and a high Cu concentration and a high Cu/Zn ratio might reflect an ongoing inflammatory process in this disease.     

Amputation level-dependent patterning in urodele limb regeneration

Comparison of mesopodial skeletal patterns found in native and regenerated limbs of the salamander Plethodon cinereus reveals variant patterns unique to each group. Variant patterns in native limbs are based on fusions between laterally adjacent elements (i.e., in the anteroposterior axis). Variant patterns in the mesopodia of regenerated limbs usually exhibit fusions among proximodistally adjacent elements. Analysis of regenerates derived from limb amputation at different levels shows that the axis of fusion between regenerated mesopodial elements remains the same (i.e., proximodistal) independent of amputation level. However, the frequency of specific fusion combinations is unexpectedly sensitive to amputation level. Proximal (stylopodial) amputation results in mesopodial patterns with predominantly preaxial fusion combinations; distal amputation produces mesopodial patterns with predominantly postaxial fusion combinations. This finding is discussed in the context of other recent studies in which amputation level influenced limb regeneration patterning.     

“山水林田湖草生命共同体”要素关联性分析——以长白山地区为例

对“山水林田湖草生命共同体”各要素相互关系的深入理解是对其实行保护、系统治理的重要基础。本研究以长白山地区为研究对象,利用空间叠置分析法定量分析该地区“山水林田湖草生命共同体”各要素间的关联性,解构各要素的关系以及相互影响程度,并量化其依存关系。研究结果显示：研究区内各市人口数量、城镇面积与耕地面积呈显著正相关关系（人口数量：R²=0.789,P < 0.05; 城镇面积：R²=0.863,P < 0.05）;耕地的分布与地表水体的分布具有较高的空间相关性（r=0.812）,两者的数量关系也呈显著正相关（R²=0.96,P < 0.01）;区内河流分布、土壤类型与地形、地貌密切相关;区内各市水土流失面积与其森林覆盖率呈显著线性负相关关系（R²=0.824,P < 0.05）。由此可见,6个要素之间存在很明显的依存关系。因此,长白山地区“山水林田湖草生命共同体”的保护与修复应该重视各要素之间的联系,针对其系统性和整体性特征实施相应的保护和治理。     

Understanding variation in salamander ionomes: A nutrient balance approach

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滇南喀斯特地区灌木群落和人工林土壤元素化学计量特征

在云南喀斯特地区,为提升退化灌木群落的生态系统服务功能,营造了不同树种的人工林分。这些人工林分如何影响土壤化学性质还未得到充分认识。以云南泸西县灌木群落及三种常见人工林(云南松(Pinus yunnanensis)、赤杨(Alnus japonica)和侧柏(Platycladus orientalis))土壤为研究对象探讨喀斯特地区在人工林建造后土壤的13种元素全量、可利用性含量和化学计量学特征变异格局,为喀斯特石漠化治理提供理论依据。结果表明,1)基于判别分析,四种群落土壤化学计量特征可以显著区分。土壤Fe、P、K、Mn全量及交换性Ca、交换性Mg和NH_4~+-N对区分四种群落土壤贡献最大。2)四种群落之间相比,侧柏林土壤C、N、S、Na全量和NO_3~--N含量均低于其他三种群落,土壤肥力较低;赤杨林铵态氮含量最高;云南松林有效Fe、有效Cu含量/N、C素具有显著相关性,占所有元素对数的38.5%,说明该地土壤元素积累的相互依赖性。与灌木群落相比,人工林土壤元素全量和可利用性含量相关性比例均更高。这些研究结果对今后基于适地适树人工林营造、生态系统服务功能提升和经营利用,均具有重要指导意义。     

Variation in soft tissue chemistry among scyphozoan and cubozoan jellyfishes from the Great Barrier Reef,Australia

Bioaccumulation of trace elements in jellyfish has so far received little attention, despite their being prey for many animals from multiple trophic levels and targeted by commercial jellyfish fisheries. Scyphozoan and cubozoan jellyfish were collected over a three year period from across-shelf and along the northern and central Great Barrier Reef, Australia. To test the hypotheses that jellyfishes were able to accumulate elements above ambient background levels, and if there were spatial or temporal variations among species, soft tissue concentrations of 14 trace elements were compared with ambient seawater concentrations. Most elements, including aluminium, arsenic, barium, cadmium, chromium, copper, iron, manganese and zinc were measured at concentrations above ambient seawater levels indicating bioaccumulative capacity. Results showed some regulation of lithium in Cassiopea sp., Cyanea sp. and Mastigias sp., while calcium, magnesium and strontium reflected ambient conditions for all species. Accumulation varied significantly among species and sampling locations. For Mastigias sp. and Netrostoma sp., tissue concentrations of Al, As, Cu, Fe and Zn decreased with distance from the mainland. The hypothesis that jellyfishes are capable of accumulating trace elements was accepted, and their use as biomonitors should be investigated further.     

Trace Elements Characteristic Based on ICP-AES and the Correlation of Flavonoids from Sparganii rhizoma

The aim of the present work was to investigate the trace elements and the correlation with flavonoids from Sparganii rhizoma. The ICP-AES and ultraviolet-visible spectroscopy were employed to analyze trace elements and flavonoids. The concentrations of trace elements and flavonoids were calculated using standard curve. The content of flavonoids was expressed as rutin equivalents. The cluster analysis was applied to evaluate geographical features of S. rhizoma from different geographical regions. The correlation analysis was used to obtain the relationship between the trace elements and flavonoids. The results indicated that the 15 trace elements were measured and the K, Ca, Mg, Na, Mn, Al, Cu, and Zn are rich in Sparganii rhizome. The different producing regions samples were classified into four groups. There was a weak relationship between trace elements and flavonoids.

     

Different effects of rain and artificial watering on element zonation patterns in lichen thalli and bark: A study on Physcia biziana (Massal.) Zahlbr. v. leptophylla Ve˘zda

Translocation processes between the inner and outer rings of lichen thalli, as well as between lichens and bark substratum, induce zonation patterns, with a dynamic stratification of pollution history memory which is often affected by the intensity of the atmospheric events. Two experiments of passive biomonitoring are presented, aimed to measure metal concentrations and zonation patterns in lichens and bark, before and after raining events or after a water sprinkling treatment. Ten elements were monitored in the lichen Physcia biziana (Massal.) Zahlbr. v. leptophylla Ve?zda in a moderately polluted area of Campania region (Italy). Element concentrations changed with lichen age, with generally higher concentrations in the older than the younger tissues. Rain and sprinkling had differential effects on lichen and bark: a significant decrease of the overall concentrations was observed after rain in bark, whereas a slight increase was observed in lichen thalli; however, when lichen thalli were just rehydrated with a sprinkling treatment, some elements were found to increase in the younger portions of the thalli and decrease in the older portions. The extent to which zonation patterns account for site “pollution memory” or are affected by the short-term local atmospheric variability is discussed.     

Elements of butterfly wing patterns

The color patterns on the wings of butterflies are unique among animal color patterns in that the elements that make up the overall pattern are individuated. Unlike the spots and stripes of vertebrate color patterns, the elements of butterfly wing patterns have identities that can be traced from species to species, and typically across genera and families. Because of this identity it is possible to recognize homologies among pattern elements and to study their evolution and diversification. Individuated pattern elements evolved from non-individuated precursors by compartmentalization of the wing into areas that became developmentally autonomous with respect to color pattern formation. Developmental compartmentalization led to the evolution of serially repeated elements and the emergence of serial homology. In these compartments, serial homologues were able to acquire site-specific developmental regulation and this, in turn, allowed them to diverge morphologically. Compartmentalization of the wing also reduced the developmental correlation among pattern elements. The release from this developmental constraint, we believe, enabled the great evolutionary radiation of butterfly wing patterns. During pattern evolution, the same set of individual pattern elements is arranged in novel ways to produce species-specific patterns, including such adaptations as mimicry and camouflage.     

Foliar chemical concentrations in red alder stands of various ages

Summary Six stands of red alder (Alnus rubra Bong.) were sampled to assess the relationship between stand age and foliar chemical concentrations. The stands ranged in age from 9 to 45 years, and were located near Olympia, Washington, on sites of similar soil, aspect, and slope. Foliage was collected in July, and concentrations of most essential nutrients and aluminum were determined. Foliar concentrations of these elements varied among the different stands. Highest concentrations of N, P, Ca, S, Fe, and Al were found in trees of the youngest stand. Concentrations of N, P, S, and Fe were negatively correlated with stand age. The strongest correlation was obtained with P (r=–0.96,P<0.01), followed by N (r=–0.85,P=0.03). Results suggest that declining growth and deterioration of red alder stands with age may be related, at least in part, to limiting supplies of essential nutrients, especially P, N, and S.     

The impact of genome defense on mobile elements in <Emphasis Type="Italic">Microbotryum</Emphasis>

Repeat induced point mutation (RIP), a mechanism causing hypermutation of repetitive DNA sequences in fungi, has been described as a ‘genome defense’ which functions to inactivate mobile elements and inhibit their deleterious effects on genome stability. Here we address the interactions between RIP and transposable elements in the Microbotryum violaceum species complex. Ten strains of M. violaceum, most of which belong to different species of the fungus, were all found to contain intragenomic populations of copia-like retrotransposons. Intragenomic DNA sequence variation among the copia-like elements was analyzed for evidence of RIP. Among species with RIP, there was no significant correlation between the frequency of RIP-induced mutations and inferred transposition rate based on diversity. Two strains of M. violaceum, from two different plant species but belonging to the same fungal lineage, contained copia-like elements with very low diversity, as would result from a high transposition rate, and these were also unique in showing no evidence of the hypermutation patterns indicative of the RIP genome defense. In this species, evidence of RIP was also absent from a Class II helitron-like transposable element. However, unexpectedly the absolute repetitive element load was lower than in other strains.     

Integration of the mammalian shoulder girdle within populations and over evolutionary time

Morphological integration has the potential to link morphological variation within populations with morphological evolution among species. This study begins to investigate this link by comparing integration among shoulder girdle elements (e.g. scapular blade, glenoid, coracoid, etc.) during the origin and evolution of therian mammals, and within modern bat, opossum and mouse populations. In this study, correlations among skeletal elements and patterns of allometry are used as proxies for integration. Results suggest that shoulder girdle elements tended to vary and evolve independently during the origin of mammals and subsequent radiation of placentals, consistent with the elements’ distinct developmental and evolutionary origins. This finding suggests that skeletal element correlations, and therefore integration, can be conserved over large taxonomic and temporal scales. However, marsupials display a different pattern in which shoulder girdle elements tend to be more integrated, with the exception of the coracoid. This finding is consistent with a shift in the pattern of skeletal element integration coincident with the appearance of the marsupial mode of reproduction. This finding provides further evidence that development can play a significant role in the establishment of patterns of skeletal element correlation and that patterns of skeletal element correlation can themselves evolve when faced with sufficient selective pressures.     

Effect of typhoon disturbance on fine litterfall and related nutrient input in a subtropical forest on Okinawa Island, Japan

Typhoons are frequent on Okinawa Island, southwestern Japan. The effects of typhoon disturbance on the patterns of fine litterfall and related nutrient inputs in a subtropical evergreen broad-leaved forest were studied over 5 years from May 1996 to April 2001. Annual fine litterfall averaged 7558 kg ha⁻¹ (range from 6188 to 9439 kg ha⁻¹) for six sampling plots over 5 years, which differed significantly among years (p<0.001) but not among plots (p=0.122). A seasonal maximum was most evident for leaf litter component. Woody litter fell more irregularly through the year, and peak fall varied with typhoon and windstorm. The mean ratio of annual litterfall mass of sexual organs to leaves was 0.06, much lower than that in other tropical and subtropical rain forests. Nutrient concentrations varied in litterfall components, but were not significantly different among plots. The lowest concentrations of N and P in leaf litter were observed in March, which is also the month with the greatest leaf fall. However, the highest concentrations were recorded in typhoon season. Nitrogen and P concentrations were 34% and 106% greater in the green leaves that fell during typhoons than in senescent leaves. Mean nutrient inputs by litterfall were: N 83, P 3.2, K 25, Ca 71, Mg 19, Al 12, Na 10, Fe 0.86 and Mn 3.9 kg ha⁻¹ yr⁻¹, and differed significantly among years for all elements (p<0.0005) and among plots only for K (p<0.05) and Mn (p<0.0001). Typhoon disturbance strongly affected annual fine litterfall and related nutrient inputs, which contributed an average of 30% of the annual litterfall mass, and from 30% to 39% (for different nutrient elements) of annual total nutrient inputs. The results from this study suggest that typhoon-driven maintenance of rapid cycling of P and N and their high availability in soil appears to be an important mechanism to maintain productivity in the subtropical forest on Okinawa Island.